Ggra4678.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4678.t1
Unique NameGgra4678.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000124_piloncontigtig00000124_pilon:71393..72232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704156.1
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
Evalue1.81e-21
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota
Descriptionubiquitin modification-dependent histone binding
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4678Ggra4678Gracilaria gracilis GNS1m malegenetig00000124_pilon 71393..72232 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4678.t1.stop1Ggra4678.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000124_pilon 71393..71395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4678.t1.CDS1Ggra4678.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000124_pilon 71393..72232 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4678.t1.exon1Ggra4678.t1.exon1Gracilaria gracilis GNS1m maleexontig00000124_pilon 71393..72232 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4678.t1.start1Ggra4678.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000124_pilon 72230..72232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4678.t1Ggra4678.t1Gracilaria gracilis GNS1m malepolypeptidetig00000124_pilon 71393..72232 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4678.t1 ID=Ggra4678.t1|Name=Ggra4678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=280bp
MGERERKAARKKYVLTKRREYWTAEEHNRFLTALALYGREWKAIERDVAT
KTAVQIRSHSQKYFLRLERNRSAALHSIPPPRPRRSRTRSTDTPASHPVS
AYRSSSPAASVHQLLAPAPSHMIASAPVSIAPAAPSPLRAHVTSFNSLYP
YAPYSTPPHRYYSPHVFNPVAPYYSTYHPTPHPHHHPHHPPHHHHHHHHH
HPHPYYCPPMCTVQQPVVVPPPRPSQEASVPVPQPPLPPPPNPHSPAMPV
DTPSSTAPTATLPTKALTVQPPAPGPPQP*
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spliced messenger RNA

>Ggra4678.t1 ID=Ggra4678.t1|Name=Ggra4678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000124_pilon:71393..72232- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGAGCGCGAGCGAAAGGCCGCCCGCAAGAAGTACGTGCTCACAAA
ACGGCGCGAGTACTGGACCGCCGAGGAACACAATCGCTTCCTGACAGCGC
TCGCGCTCTACGGCCGCGAATGGAAGGCCATAGAGCGCGACGTAGCCACC
AAGACCGCCGTGCAGATTCGTTCTCATTCCCAAAAGTACTTTCTGCGCCT
CGAGCGCAATCGTTCCGCCGCCCTCCATTCCATCCCGCCTCCTCGTCCCC
GTCGCTCGCGTACTCGCTCCACCGATACTCCCGCCTCACATCCTGTGTCC
GCTTATCGTTCTTCTTCGCCAGCTGCTTCTGTACATCAGCTCTTGGCGCC
GGCGCCATCCCACATGATTGCTTCTGCGCCCGTAAGCATTGCGCCTGCAG
CCCCTTCCCCTCTCCGCGCCCATGTAACTTCTTTCAACTCGCTCTATCCA
TACGCGCCGTACAGCACGCCGCCGCATCGCTACTACTCTCCGCATGTATT
CAACCCCGTCGCGCCGTACTACTCAACTTATCATCCTACACCGCACCCCC
ATCATCATCCACATCACCCGCCCCACCATCATCATCATCACCACCACCAC
CATCCGCACCCGTACTACTGCCCGCCCATGTGCACCGTTCAACAACCCGT
CGTCGTTCCGCCGCCTCGGCCTTCTCAAGAGGCAAGCGTCCCCGTGCCCC
AGCCGCCGCTGCCGCCGCCGCCCAACCCTCACTCCCCCGCCATGCCCGTG
GACACCCCCTCGTCAACTGCCCCGACCGCTACGCTCCCTACTAAAGCGCT
TACAGTACAACCGCCTGCGCCAGGTCCGCCGCAACCATAG
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protein sequence of Ggra4678.t1

>Ggra4678.t1 ID=Ggra4678.t1|Name=Ggra4678.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=280bp
MGERERKAARKKYVLTKRREYWTAEEHNRFLTALALYGREWKAIERDVAT
KTAVQIRSHSQKYFLRLERNRSAALHSIPPPRPRRSRTRSTDTPASHPVS
AYRSSSPAASVHQLLAPAPSHMIASAPVSIAPAAPSPLRAHVTSFNSLYP
YAPYSTPPHRYYSPHVFNPVAPYYSTYHPTPHPHHHPHHPPHHHHHHHHH
HPHPYYCPPMCTVQQPVVVPPPRPSQEASVPVPQPPLPPPPNPHSPAMPV
DTPSSTAPTATLPTKALTVQPPAPGPPQP*
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mRNA from alignment at tig00000124_pilon:71393..72232-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4678.t1 ID=Ggra4678.t1|Name=Ggra4678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000124_pilon:71393..72232- (Gracilaria gracilis GNS1m male)
ATGGGCGAGCGCGAGCGAAAGGCCGCCCGCAAGAAGTACGTGCTCACAAA
ACGGCGCGAGTACTGGACCGCCGAGGAACACAATCGCTTCCTGACAGCGC
TCGCGCTCTACGGCCGCGAATGGAAGGCCATAGAGCGCGACGTAGCCACC
AAGACCGCCGTGCAGATTCGTTCTCATTCCCAAAAGTACTTTCTGCGCCT
CGAGCGCAATCGTTCCGCCGCCCTCCATTCCATCCCGCCTCCTCGTCCCC
GTCGCTCGCGTACTCGCTCCACCGATACTCCCGCCTCACATCCTGTGTCC
GCTTATCGTTCTTCTTCGCCAGCTGCTTCTGTACATCAGCTCTTGGCGCC
GGCGCCATCCCACATGATTGCTTCTGCGCCCGTAAGCATTGCGCCTGCAG
CCCCTTCCCCTCTCCGCGCCCATGTAACTTCTTTCAACTCGCTCTATCCA
TACGCGCCGTACAGCACGCCGCCGCATCGCTACTACTCTCCGCATGTATT
CAACCCCGTCGCGCCGTACTACTCAACTTATCATCCTACACCGCACCCCC
ATCATCATCCACATCACCCGCCCCACCATCATCATCATCACCACCACCAC
CATCCGCACCCGTACTACTGCCCGCCCATGTGCACCGTTCAACAACCCGT
CGTCGTTCCGCCGCCTCGGCCTTCTCAAGAGGCAAGCGTCCCCGTGCCCC
AGCCGCCGCTGCCGCCGCCGCCCAACCCTCACTCCCCCGCCATGCCCGTG
GACACCCCCTCGTCAACTGCCCCGACCGCTACGCTCCCTACTAAAGCGCT
TACAGTACAACCGCCTGCGCCAGGTCCGCCGCAACCATAG
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Coding sequence (CDS) from alignment at tig00000124_pilon:71393..72232-

>Ggra4678.t1 ID=Ggra4678.t1|Name=Ggra4678.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00000124_pilon:71393..72232- (Gracilaria gracilis GNS1m male)
ATGGGCGAGCGCGAGCGAAAGGCCGCCCGCAAGAAGTACGTGCTCACAAA
ACGGCGCGAGTACTGGACCGCCGAGGAACACAATCGCTTCCTGACAGCGC
TCGCGCTCTACGGCCGCGAATGGAAGGCCATAGAGCGCGACGTAGCCACC
AAGACCGCCGTGCAGATTCGTTCTCATTCCCAAAAGTACTTTCTGCGCCT
CGAGCGCAATCGTTCCGCCGCCCTCCATTCCATCCCGCCTCCTCGTCCCC
GTCGCTCGCGTACTCGCTCCACCGATACTCCCGCCTCACATCCTGTGTCC
GCTTATCGTTCTTCTTCGCCAGCTGCTTCTGTACATCAGCTCTTGGCGCC
GGCGCCATCCCACATGATTGCTTCTGCGCCCGTAAGCATTGCGCCTGCAG
CCCCTTCCCCTCTCCGCGCCCATGTAACTTCTTTCAACTCGCTCTATCCA
TACGCGCCGTACAGCACGCCGCCGCATCGCTACTACTCTCCGCATGTATT
CAACCCCGTCGCGCCGTACTACTCAACTTATCATCCTACACCGCACCCCC
ATCATCATCCACATCACCCGCCCCACCATCATCATCATCACCACCACCAC
CATCCGCACCCGTACTACTGCCCGCCCATGTGCACCGTTCAACAACCCGT
CGTCGTTCCGCCGCCTCGGCCTTCTCAAGAGGCAAGCGTCCCCGTGCCCC
AGCCGCCGCTGCCGCCGCCGCCCAACCCTCACTCCCCCGCCATGCCCGTG
GACACCCCCTCGTCAACTGCCCCGACCGCTACGCTCCCTACTAAAGCGCT
TACAGTACAACCGCCTGCGCCAGGTCCGCCGCAACCATAG
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