Ggra4672.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4672.t1
Unique NameGgra4672.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000124_piloncontigtig00000124_pilon:51371..52069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4672Ggra4672Gracilaria gracilis GNS1m malegenetig00000124_pilon 51371..52069 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4672.t1.start1Ggra4672.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000124_pilon 51371..51373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4672.t1.CDS1Ggra4672.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000124_pilon 51371..52069 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4672.t1.exon1Ggra4672.t1.exon1Gracilaria gracilis GNS1m maleexontig00000124_pilon 51371..52069 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4672.t1.stop1Ggra4672.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000124_pilon 52067..52069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4672.t1Ggra4672.t1Gracilaria gracilis GNS1m malepolypeptidetig00000124_pilon 51371..52069 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4672.t1 ID=Ggra4672.t1|Name=Ggra4672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=233bp
MAGGTEALAKDAAAVIRLMRGLSSDDDSHARKVVQSTEEALNEAATREWP
ASTFVLGVIRKLLIIWKSPLGVEKWLKGDFEILISESTGRFHSDNSVVGV
VSSLAQDSSLKDTSQISKNEMHGSDLPAFSMLGMLFALMRHENSRVRYAC
LKLLRKVRMDSLFVLYFPSVMMLLQEETNGLIVAGYVREIMTAPGLMSRV
ETCNVAFNLRVHMRQRLAHVVPPSLRSKARAA*
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spliced messenger RNA

>Ggra4672.t1 ID=Ggra4672.t1|Name=Ggra4672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000124_pilon:51371..52069+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGTGGTACTGAGGCGCTCGCAAAGGATGCTGCTGCGGTCATTCG
GTTAATGCGGGGCTTAAGTTCTGATGATGATTCACATGCGAGAAAAGTCG
TTCAGAGTACAGAAGAAGCCCTGAATGAGGCAGCAACGCGAGAATGGCCG
GCTTCAACATTTGTGCTTGGCGTGATTCGAAAGTTGCTCATTATTTGGAA
GTCTCCACTAGGTGTAGAGAAGTGGCTCAAAGGAGACTTTGAGATTCTCA
TAAGCGAGAGCACAGGACGTTTTCACAGCGACAACAGCGTAGTGGGAGTT
GTCAGCTCGTTGGCACAAGATTCTTCACTGAAAGACACATCTCAGATATC
TAAGAATGAAATGCACGGTTCAGATCTTCCGGCGTTTTCGATGCTTGGTA
TGTTGTTTGCCTTGATGCGTCATGAGAACTCCCGTGTGCGGTACGCTTGC
CTTAAACTTTTGCGAAAAGTACGCATGGATAGCTTATTCGTGTTATACTT
TCCCTCAGTCATGATGCTTCTTCAAGAAGAAACAAATGGTCTTATCGTAG
CCGGTTACGTACGAGAGATCATGACCGCACCGGGCCTCATGTCTCGAGTT
GAAACATGTAATGTGGCGTTTAATCTCCGCGTGCATATGCGCCAGCGACT
GGCGCACGTCGTGCCGCCGTCGCTGCGTTCAAAAGCACGCGCCGCTTAG
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protein sequence of Ggra4672.t1

>Ggra4672.t1 ID=Ggra4672.t1|Name=Ggra4672.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MAGGTEALAKDAAAVIRLMRGLSSDDDSHARKVVQSTEEALNEAATREWP
ASTFVLGVIRKLLIIWKSPLGVEKWLKGDFEILISESTGRFHSDNSVVGV
VSSLAQDSSLKDTSQISKNEMHGSDLPAFSMLGMLFALMRHENSRVRYAC
LKLLRKVRMDSLFVLYFPSVMMLLQEETNGLIVAGYVREIMTAPGLMSRV
ETCNVAFNLRVHMRQRLAHVVPPSLRSKARAA*
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mRNA from alignment at tig00000124_pilon:51371..52069+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4672.t1 ID=Ggra4672.t1|Name=Ggra4672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000124_pilon:51371..52069+ (Gracilaria gracilis GNS1m male)
ATGGCCGGTGGTACTGAGGCGCTCGCAAAGGATGCTGCTGCGGTCATTCG
GTTAATGCGGGGCTTAAGTTCTGATGATGATTCACATGCGAGAAAAGTCG
TTCAGAGTACAGAAGAAGCCCTGAATGAGGCAGCAACGCGAGAATGGCCG
GCTTCAACATTTGTGCTTGGCGTGATTCGAAAGTTGCTCATTATTTGGAA
GTCTCCACTAGGTGTAGAGAAGTGGCTCAAAGGAGACTTTGAGATTCTCA
TAAGCGAGAGCACAGGACGTTTTCACAGCGACAACAGCGTAGTGGGAGTT
GTCAGCTCGTTGGCACAAGATTCTTCACTGAAAGACACATCTCAGATATC
TAAGAATGAAATGCACGGTTCAGATCTTCCGGCGTTTTCGATGCTTGGTA
TGTTGTTTGCCTTGATGCGTCATGAGAACTCCCGTGTGCGGTACGCTTGC
CTTAAACTTTTGCGAAAAGTACGCATGGATAGCTTATTCGTGTTATACTT
TCCCTCAGTCATGATGCTTCTTCAAGAAGAAACAAATGGTCTTATCGTAG
CCGGTTACGTACGAGAGATCATGACCGCACCGGGCCTCATGTCTCGAGTT
GAAACATGTAATGTGGCGTTTAATCTCCGCGTGCATATGCGCCAGCGACT
GGCGCACGTCGTGCCGCCGTCGCTGCGTTCAAAAGCACGCGCCGCTTAG
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Coding sequence (CDS) from alignment at tig00000124_pilon:51371..52069+

>Ggra4672.t1 ID=Ggra4672.t1|Name=Ggra4672.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00000124_pilon:51371..52069+ (Gracilaria gracilis GNS1m male)
ATGGCCGGTGGTACTGAGGCGCTCGCAAAGGATGCTGCTGCGGTCATTCG
GTTAATGCGGGGCTTAAGTTCTGATGATGATTCACATGCGAGAAAAGTCG
TTCAGAGTACAGAAGAAGCCCTGAATGAGGCAGCAACGCGAGAATGGCCG
GCTTCAACATTTGTGCTTGGCGTGATTCGAAAGTTGCTCATTATTTGGAA
GTCTCCACTAGGTGTAGAGAAGTGGCTCAAAGGAGACTTTGAGATTCTCA
TAAGCGAGAGCACAGGACGTTTTCACAGCGACAACAGCGTAGTGGGAGTT
GTCAGCTCGTTGGCACAAGATTCTTCACTGAAAGACACATCTCAGATATC
TAAGAATGAAATGCACGGTTCAGATCTTCCGGCGTTTTCGATGCTTGGTA
TGTTGTTTGCCTTGATGCGTCATGAGAACTCCCGTGTGCGGTACGCTTGC
CTTAAACTTTTGCGAAAAGTACGCATGGATAGCTTATTCGTGTTATACTT
TCCCTCAGTCATGATGCTTCTTCAAGAAGAAACAAATGGTCTTATCGTAG
CCGGTTACGTACGAGAGATCATGACCGCACCGGGCCTCATGTCTCGAGTT
GAAACATGTAATGTGGCGTTTAATCTCCGCGTGCATATGCGCCAGCGACT
GGCGCACGTCGTGCCGCCGTCGCTGCGTTCAAAAGCACGCGCCGCTTAG
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