Ggra4657.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4657.t1
Unique NameGgra4657.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000061_piloncontigtig00000061_pilon:536654..537319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD16370
PFAMsMethyltransf_25
Max annot lvl2759|Eukaryota
Evalue3.11e-62
EggNOG OGs2EAI4@1|root,2SGRX@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4657Ggra4657Gracilaria gracilis GNS1m malegenetig00000061_pilon 536654..537319 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4657.t1.start1Ggra4657.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000061_pilon 536654..536656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4657.t1.CDS1Ggra4657.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000061_pilon 536654..537319 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4657.t1.exon1Ggra4657.t1.exon1Gracilaria gracilis GNS1m maleexontig00000061_pilon 536654..537319 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4657.t1.stop1Ggra4657.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000061_pilon 537317..537319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4657.t1Ggra4657.t1Gracilaria gracilis GNS1m malepolypeptidetig00000061_pilon 536654..537319 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4657.t1 ID=Ggra4657.t1|Name=Ggra4657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MEVHRKVPENWLGEREGHIPSYWHIINLSADVVTRLHEPSARILSFWTAT
DNQWKPYDEHGWNPKNFFGVNYSEALHKEFCSRFPASGSRLVDEKTRPYN
TVVDGPFDVVQMHWSLHFEPLDERQKVLQNVCCALNPGGTLLLTDKTKQT
AFVESMYHDFKHSKGVSHEEIAAKEKAIFGVLEPLPSYWHEKALSEAGFI
DRCVIHAHLGFVTWVARKPKS*
back to top

spliced messenger RNA

>Ggra4657.t1 ID=Ggra4657.t1|Name=Ggra4657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000061_pilon:536654..537319+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTTCACCGAAAGGTCCCTGAAAATTGGCTTGGAGAAAGGGAAGG
TCATATTCCTAGCTACTGGCATATAATTAATCTTTCAGCTGACGTTGTGA
CACGTCTTCATGAACCATCTGCACGCATTTTGAGTTTTTGGACTGCAACT
GACAATCAATGGAAACCTTATGATGAGCACGGCTGGAATCCGAAGAATTT
TTTCGGAGTCAACTACTCTGAAGCGCTTCATAAAGAGTTTTGTTCGCGAT
TTCCTGCGAGTGGAAGCCGTCTAGTCGACGAGAAAACAAGACCGTATAAT
ACCGTCGTGGATGGTCCGTTTGATGTTGTACAAATGCACTGGTCGCTTCA
TTTTGAGCCACTTGATGAACGCCAAAAAGTGTTACAAAATGTTTGCTGTG
CCCTCAACCCGGGCGGAACATTACTCCTAACAGATAAGACGAAACAGACA
GCTTTCGTAGAATCTATGTACCACGATTTCAAGCATTCCAAAGGAGTGAG
CCACGAAGAAATAGCAGCAAAGGAAAAGGCAATTTTTGGTGTTTTGGAAC
CTTTGCCATCTTATTGGCATGAGAAGGCGTTAAGTGAAGCAGGTTTCATT
GATCGTTGTGTGATTCACGCTCATTTAGGATTCGTTACATGGGTTGCCAG
GAAACCGAAGTCTTAA
back to top

protein sequence of Ggra4657.t1

>Ggra4657.t1 ID=Ggra4657.t1|Name=Ggra4657.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MEVHRKVPENWLGEREGHIPSYWHIINLSADVVTRLHEPSARILSFWTAT
DNQWKPYDEHGWNPKNFFGVNYSEALHKEFCSRFPASGSRLVDEKTRPYN
TVVDGPFDVVQMHWSLHFEPLDERQKVLQNVCCALNPGGTLLLTDKTKQT
AFVESMYHDFKHSKGVSHEEIAAKEKAIFGVLEPLPSYWHEKALSEAGFI
DRCVIHAHLGFVTWVARKPKS*
back to top

mRNA from alignment at tig00000061_pilon:536654..537319+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4657.t1 ID=Ggra4657.t1|Name=Ggra4657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000061_pilon:536654..537319+ (Gracilaria gracilis GNS1m male)
ATGGAAGTTCACCGAAAGGTCCCTGAAAATTGGCTTGGAGAAAGGGAAGG
TCATATTCCTAGCTACTGGCATATAATTAATCTTTCAGCTGACGTTGTGA
CACGTCTTCATGAACCATCTGCACGCATTTTGAGTTTTTGGACTGCAACT
GACAATCAATGGAAACCTTATGATGAGCACGGCTGGAATCCGAAGAATTT
TTTCGGAGTCAACTACTCTGAAGCGCTTCATAAAGAGTTTTGTTCGCGAT
TTCCTGCGAGTGGAAGCCGTCTAGTCGACGAGAAAACAAGACCGTATAAT
ACCGTCGTGGATGGTCCGTTTGATGTTGTACAAATGCACTGGTCGCTTCA
TTTTGAGCCACTTGATGAACGCCAAAAAGTGTTACAAAATGTTTGCTGTG
CCCTCAACCCGGGCGGAACATTACTCCTAACAGATAAGACGAAACAGACA
GCTTTCGTAGAATCTATGTACCACGATTTCAAGCATTCCAAAGGAGTGAG
CCACGAAGAAATAGCAGCAAAGGAAAAGGCAATTTTTGGTGTTTTGGAAC
CTTTGCCATCTTATTGGCATGAGAAGGCGTTAAGTGAAGCAGGTTTCATT
GATCGTTGTGTGATTCACGCTCATTTAGGATTCGTTACATGGGTTGCCAG
GAAACCGAAGTCTTAA
back to top

Coding sequence (CDS) from alignment at tig00000061_pilon:536654..537319+

>Ggra4657.t1 ID=Ggra4657.t1|Name=Ggra4657.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000061_pilon:536654..537319+ (Gracilaria gracilis GNS1m male)
ATGGAAGTTCACCGAAAGGTCCCTGAAAATTGGCTTGGAGAAAGGGAAGG
TCATATTCCTAGCTACTGGCATATAATTAATCTTTCAGCTGACGTTGTGA
CACGTCTTCATGAACCATCTGCACGCATTTTGAGTTTTTGGACTGCAACT
GACAATCAATGGAAACCTTATGATGAGCACGGCTGGAATCCGAAGAATTT
TTTCGGAGTCAACTACTCTGAAGCGCTTCATAAAGAGTTTTGTTCGCGAT
TTCCTGCGAGTGGAAGCCGTCTAGTCGACGAGAAAACAAGACCGTATAAT
ACCGTCGTGGATGGTCCGTTTGATGTTGTACAAATGCACTGGTCGCTTCA
TTTTGAGCCACTTGATGAACGCCAAAAAGTGTTACAAAATGTTTGCTGTG
CCCTCAACCCGGGCGGAACATTACTCCTAACAGATAAGACGAAACAGACA
GCTTTCGTAGAATCTATGTACCACGATTTCAAGCATTCCAAAGGAGTGAG
CCACGAAGAAATAGCAGCAAAGGAAAAGGCAATTTTTGGTGTTTTGGAAC
CTTTGCCATCTTATTGGCATGAGAAGGCGTTAAGTGAAGCAGGTTTCATT
GATCGTTGTGTGATTCACGCTCATTTAGGATTCGTTACATGGGTTGCCAG
GAAACCGAAGTCTTAA
back to top