Ggra4645.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4645.t1
Unique NameGgra4645.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length357
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000061_piloncontigtig00000061_pilon:283909..285063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog706587.Desti_4969
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5
Max annot lvl1224|Proteobacteria
KEGG koko:K21440
Evalue0.000978
EggNOG OGsCOG0666@1|root,COG0666@2|Bacteria,1RBYV@1224|Proteobacteria
Descriptionankyrin repeat
COG categoryKT
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4645Ggra4645Gracilaria gracilis GNS1m malegenetig00000061_pilon 283909..285063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4645.t1Ggra4645.t1Gracilaria gracilis GNS1m malepolypeptidetig00000061_pilon 283909..285063 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4645.t1.start1Ggra4645.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000061_pilon 283909..283911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4645.t1.CDS1Ggra4645.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000061_pilon 283909..284486 +
Ggra4645.t1.CDS2Ggra4645.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000061_pilon 284571..285063 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4645.t1.exon1Ggra4645.t1.exon1Gracilaria gracilis GNS1m maleexontig00000061_pilon 283909..284486 +
Ggra4645.t1.exon2Ggra4645.t1.exon2Gracilaria gracilis GNS1m maleexontig00000061_pilon 284571..285063 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4645.t1.intron1Ggra4645.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000061_pilon 284487..284570 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4645.t1.stop1Ggra4645.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000061_pilon 285061..285063 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4645.t1 ID=Ggra4645.t1|Name=Ggra4645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp
MPLFNHPNSWRPDAPLHRAAKSGDLTEVKKLLKHGADVNALGKDGRTALL
YATAEGHLSIVEELLAHGAEVNATSDIGVSPLLNAVLYKDVALTKALLME
GADFNQTTDFGTALHIAAEKGNAQVVEELLKSGADFNCKDDNGNTPLHRA
SNSDNQNVLLALWRAGADPLERNDANETPLSRLPERSYAAQQISPGGEKT
VTAQDAIPELHDILREHFSKTACVDVNEDEVENVIIDHMDHSTCSLGVYG
VVKSFHVLRRKYQEQPELRVRFRKATRSKGVLRSKLAKRLLHALFEEFAR
ASLSCTEDSILWNESDVDSLLADQSCSENGIDEEGFVKVATEVLFSDGGT
GEKLGG*
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spliced messenger RNA

>Ggra4645.t1 ID=Ggra4645.t1|Name=Ggra4645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000061_pilon:283909..285063+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTTATTCAACCACCCAAATTCTTGGCGCCCTGACGCCCCTTTGCA
TCGAGCCGCCAAGAGTGGTGATTTGACTGAAGTGAAGAAGCTACTAAAAC
ACGGCGCTGACGTGAATGCCTTGGGCAAAGATGGTAGAACCGCGCTGTTA
TACGCCACTGCGGAAGGGCACCTCTCTATTGTCGAAGAGCTACTTGCGCA
CGGCGCGGAAGTGAACGCGACTAGTGATATTGGGGTATCACCGTTGCTCA
ATGCCGTTTTGTACAAAGATGTGGCACTAACGAAAGCGCTGCTGATGGAA
GGCGCTGACTTCAACCAAACAACCGATTTCGGCACCGCGTTGCACATAGC
CGCGGAAAAAGGAAACGCCCAAGTTGTGGAAGAGCTGCTGAAGAGCGGCG
CCGACTTTAATTGCAAGGATGATAATGGAAACACCCCACTACATCGTGCT
TCCAATTCTGACAACCAGAACGTGTTGCTTGCATTGTGGCGTGCCGGTGC
CGACCCGCTCGAAAGAAATGATGCCAACGAGACGCCGCTGTCGCGGCTGC
CCGAAAGAAGCTATGCCGCTCAACAGATCTCTCCCGGGGGCGAAAAAACG
GTCACAGCACAAGATGCAATCCCAGAGCTGCACGATATTTTGCGGGAACA
CTTTAGTAAAACCGCCTGCGTCGATGTTAACGAAGATGAAGTAGAAAATG
TTATCATCGACCACATGGATCACAGCACGTGTTCGCTTGGCGTTTATGGA
GTTGTCAAATCCTTTCATGTGTTGCGGAGAAAGTATCAGGAGCAGCCAGA
ACTACGGGTAAGGTTCAGGAAGGCCACACGATCAAAAGGCGTTCTGAGAT
CCAAGCTTGCCAAGCGGCTGTTGCATGCATTGTTTGAGGAGTTTGCTAGA
GCATCATTATCATGCACAGAGGACAGTATCTTATGGAATGAATCAGACGT
AGATAGTCTACTGGCAGATCAGAGTTGCTCTGAAAATGGTATTGATGAGG
AGGGATTTGTGAAGGTGGCAACGGAAGTCTTGTTTTCTGATGGCGGTACT
GGAGAGAAACTGGGCGGATAG
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protein sequence of Ggra4645.t1

>Ggra4645.t1 ID=Ggra4645.t1|Name=Ggra4645.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=357bp
MPLFNHPNSWRPDAPLHRAAKSGDLTEVKKLLKHGADVNALGKDGRTALL
YATAEGHLSIVEELLAHGAEVNATSDIGVSPLLNAVLYKDVALTKALLME
GADFNQTTDFGTALHIAAEKGNAQVVEELLKSGADFNCKDDNGNTPLHRA
SNSDNQNVLLALWRAGADPLERNDANETPLSRLPERSYAAQQISPGGEKT
VTAQDAIPELHDILREHFSKTACVDVNEDEVENVIIDHMDHSTCSLGVYG
VVKSFHVLRRKYQEQPELRVRFRKATRSKGVLRSKLAKRLLHALFEEFAR
ASLSCTEDSILWNESDVDSLLADQSCSENGIDEEGFVKVATEVLFSDGGT
GEKLGG*
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mRNA from alignment at tig00000061_pilon:283909..285063+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4645.t1 ID=Ggra4645.t1|Name=Ggra4645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000061_pilon:283909..285063+ (Gracilaria gracilis GNS1m male)
ATGCCTTTATTCAACCACCCAAATTCTTGGCGCCCTGACGCCCCTTTGCA
TCGAGCCGCCAAGAGTGGTGATTTGACTGAAGTGAAGAAGCTACTAAAAC
ACGGCGCTGACGTGAATGCCTTGGGCAAAGATGGTAGAACCGCGCTGTTA
TACGCCACTGCGGAAGGGCACCTCTCTATTGTCGAAGAGCTACTTGCGCA
CGGCGCGGAAGTGAACGCGACTAGTGATATTGGGGTATCACCGTTGCTCA
ATGCCGTTTTGTACAAAGATGTGGCACTAACGAAAGCGCTGCTGATGGAA
GGCGCTGACTTCAACCAAACAACCGATTTCGGCACCGCGTTGCACATAGC
CGCGGAAAAAGGAAACGCCCAAGTTGTGGAAGAGCTGCTGAAGAGCGGCG
CCGACTTTAATTGCAAGGATGATAATGGAAACACCCCACTACATCGTGCT
TCCAATTCTGACAACCAGAACGTGTTGCTTGCATTGTGGCGTGCCGGTGC
CGACCCGCTCGAAAGAAATGATGCCAACGAGACGCCGCTGTCGCGGCTGC
CCGAAAGAAGCTATGCCGCTCAACAGATGTGATTCGCTCCGCGCTTACGC
CGCCCTGAGTTCTTTGCTGACGAAGATGAATTGCGGGATCGAATCTCGCG
TCTAGCATCTAGCTCTCCCGGGGGCGAAAAAACGGTCACAGCACAAGATG
CAATCCCAGAGCTGCACGATATTTTGCGGGAACACTTTAGTAAAACCGCC
TGCGTCGATGTTAACGAAGATGAAGTAGAAAATGTTATCATCGACCACAT
GGATCACAGCACGTGTTCGCTTGGCGTTTATGGAGTTGTCAAATCCTTTC
ATGTGTTGCGGAGAAAGTATCAGGAGCAGCCAGAACTACGGGTAAGGTTC
AGGAAGGCCACACGATCAAAAGGCGTTCTGAGATCCAAGCTTGCCAAGCG
GCTGTTGCATGCATTGTTTGAGGAGTTTGCTAGAGCATCATTATCATGCA
CAGAGGACAGTATCTTATGGAATGAATCAGACGTAGATAGTCTACTGGCA
GATCAGAGTTGCTCTGAAAATGGTATTGATGAGGAGGGATTTGTGAAGGT
GGCAACGGAAGTCTTGTTTTCTGATGGCGGTACTGGAGAGAAACTGGGCG
GATAG
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Coding sequence (CDS) from alignment at tig00000061_pilon:283909..285063+

>Ggra4645.t1 ID=Ggra4645.t1|Name=Ggra4645.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1071bp|location=Sequence derived from alignment at tig00000061_pilon:283909..285063+ (Gracilaria gracilis GNS1m male)
ATGCCTTTATTCAACCACCCAAATTCTTGGCGCCCTGACGCCCCTTTGCA
TCGAGCCGCCAAGAGTGGTGATTTGACTGAAGTGAAGAAGCTACTAAAAC
ACGGCGCTGACGTGAATGCCTTGGGCAAAGATGGTAGAACCGCGCTGTTA
TACGCCACTGCGGAAGGGCACCTCTCTATTGTCGAAGAGCTACTTGCGCA
CGGCGCGGAAGTGAACGCGACTAGTGATATTGGGGTATCACCGTTGCTCA
ATGCCGTTTTGTACAAAGATGTGGCACTAACGAAAGCGCTGCTGATGGAA
GGCGCTGACTTCAACCAAACAACCGATTTCGGCACCGCGTTGCACATAGC
CGCGGAAAAAGGAAACGCCCAAGTTGTGGAAGAGCTGCTGAAGAGCGGCG
CCGACTTTAATTGCAAGGATGATAATGGAAACACCCCACTACATCGTGCT
TCCAATTCTGACAACCAGAACGTGTTGCTTGCATTGTGGCGTGCCGGTGC
CGACCCGCTCGAAAGAAATGATGCCAACGAGACGCCGCTGTCGCGGCTGC
CCGAAAGAAGCTATGCCGCTCAACAGATCTCTCCCGGGGGCGAAAAAACG
GTCACAGCACAAGATGCAATCCCAGAGCTGCACGATATTTTGCGGGAACA
CTTTAGTAAAACCGCCTGCGTCGATGTTAACGAAGATGAAGTAGAAAATG
TTATCATCGACCACATGGATCACAGCACGTGTTCGCTTGGCGTTTATGGA
GTTGTCAAATCCTTTCATGTGTTGCGGAGAAAGTATCAGGAGCAGCCAGA
ACTACGGGTAAGGTTCAGGAAGGCCACACGATCAAAAGGCGTTCTGAGAT
CCAAGCTTGCCAAGCGGCTGTTGCATGCATTGTTTGAGGAGTTTGCTAGA
GCATCATTATCATGCACAGAGGACAGTATCTTATGGAATGAATCAGACGT
AGATAGTCTACTGGCAGATCAGAGTTGCTCTGAAAATGGTATTGATGAGG
AGGGATTTGTGAAGGTGGCAACGGAAGTCTTGTTTTCTGATGGCGGTACT
GGAGAGAAACTGGGCGGATAG
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