Ggra4642.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4642.t1
Unique NameGgra4642.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000061_piloncontigtig00000061_pilon:95767..98881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4642Ggra4642Gracilaria gracilis GNS1m malegenetig00000061_pilon 95767..98881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4642.t1Ggra4642.t1Gracilaria gracilis GNS1m malepolypeptidetig00000061_pilon 95767..98881 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4642.t1.stop1Ggra4642.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000061_pilon 95767..95769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4642.t1.CDS1Ggra4642.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000061_pilon 95767..96946 -
Ggra4642.t1.CDS2Ggra4642.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000061_pilon 98868..98881 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4642.t1.exon1Ggra4642.t1.exon1Gracilaria gracilis GNS1m maleexontig00000061_pilon 95767..96946 -
Ggra4642.t1.exon2Ggra4642.t1.exon2Gracilaria gracilis GNS1m maleexontig00000061_pilon 98868..98881 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4642.t1.intron1Ggra4642.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000061_pilon 96947..98867 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4642.t1.start1Ggra4642.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000061_pilon 98879..98881 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4642.t1 ID=Ggra4642.t1|Name=Ggra4642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp
MLALEGLAVAWEWDLAVAWGWDPAVAWGWDLAVAWGWDPAVAWGWDLAVA
WEWDLAVAWEWDLAVEWEWDLAVAWEWDLAVAWEWDLAVVLLVLLVLLVL
LVLLVLLALLVLLALLVVTALLVLPALLALLAVTVLLGLLGLLVVTALPA
LPALLALLVLLVVTALPALLVLLVVTALLGLPALLVLLVLLVVTALLGLP
VPTGPAGPAGGDGPAGPAGPTGPAGPAGGDGPAGPAGPTGPAGPAGGDGP
AGPAGPAGPAGPASPGGGFLFPFPLFGGPAAPAPAPAPAPAPGFSFPLSG
DSFTSSSSSTATASGTGGGGGGGGDGNAMGVSAAAGIGGTGSGSPGTLFG
AIGAGGSGNALASGSDSSAANLGSFLNLGFGGFGGTGGAGTGTATSS*
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spliced messenger RNA

>Ggra4642.t1 ID=Ggra4642.t1|Name=Ggra4642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000061_pilon:95767..98881- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGCGCTTGAGGGCCTGGCGGTGGCATGGGAATGGGACCTGGCGGT
GGCATGGGGATGGGACCCGGCGGTGGCATGGGGATGGGACCTGGCGGTGG
CATGGGGATGGGACCCGGCGGTGGCATGGGGATGGGACCTGGCGGTGGCA
TGGGAATGGGACCTGGCGGTGGCATGGGAATGGGACCTGGCGGTGGAATG
GGAATGGGACCTGGCGGTGGCATGGGAATGGGACCTGGCGGTGGCATGGG
AATGGGACCTGGCGGTGGTCCTGCTGGTCCTGCTGGTCCTGCTGGTCCTG
CTGGTCCTGCTGGTCCTGCTGGCCCTACTGGTCCTACTGGCCCTGCTGGT
GGTGACGGCCCTGCTGGTCCTACCGGCCCTGCTGGCCCTGCTGGCGGTGA
CGGTCCTGCTGGGCCTGCTGGGCCTGCTGGTGGTGACGGCCCTGCCGGCC
CTGCCGGCCCTACTGGCCCTGCTGGTCCTGCTGGTGGTGACGGCCCTGCC
GGCCCTGCTGGTCCTGCTGGTGGTGACGGCCCTGCTGGGCCTGCCGGCCC
TACTGGTCCTGCTGGTCCTGCTGGTGGTGACGGCCCTGCTGGGCCTGCCG
GTCCCTACTGGTCCTGCTGGTCCTGCTGGTGGTGACGGCCCTGCTGGGCC
TGCCGGCCCTACTGGTCCTGCTGGTCCTGCTGGTGGTGACGGCCCTGCTG
GGCCTGCCGGCCCTACTGGTCCTGCTGGTCCTGCTGGTGGTGACGGCCCT
GCTGGTCCTGCCGGCCCTGCCGGCCCTGCTGGCCCTGCCAGCCCTGGTGG
TGGATTTTTGTTTCCTTTCCCGCTTTTTGGAGGTCCAGCTGCGCCCGCTC
CTGCGCCAGCTCCCGCTCCCGCTCCTGGTTTTTCTTTCCCGCTCTCTGGA
GATTCATTCACATCATCTTCTTCCTCGACCGCAACAGCAAGCGGTACAGG
TGGTGGGGGAGGTGGTGGTGGTGATGGAAACGCTATGGGGGTGTCAGCTG
CAGCTGGTATTGGTGGTACTGGCTCCGGAAGTCCCGGCACTCTCTTCGGT
GCAATTGGCGCAGGCGGATCTGGGAATGCATTAGCATCCGGCTCTGATTC
TAGTGCAGCGAACCTTGGAAGTTTCCTCAACCTCGGGTTCGGTGGCTTTG
GCGGTACCGGTGGAGCAGGTACCGGTACAGCTACATCCAGTTAG
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protein sequence of Ggra4642.t1

>Ggra4642.t1 ID=Ggra4642.t1|Name=Ggra4642.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=398bp
MLALEGLAVAWEWDLAVAWGWDPAVAWGWDLAVAWGWDPAVAWGWDLAVA
WEWDLAVAWEWDLAVEWEWDLAVAWEWDLAVAWEWDLAVVLLVLLVLLVL
LVLLVLLALLVLLALLVVTALLVLPALLALLAVTVLLGLLGLLVVTALPA
LPALLALLVLLVVTALPALLVLLVVTALLGLPALLVLLVLLVVTALLGLP
VPTGPAGPAGGDGPAGPAGPTGPAGPAGGDGPAGPAGPTGPAGPAGGDGP
AGPAGPAGPAGPASPGGGFLFPFPLFGGPAAPAPAPAPAPAPGFSFPLSG
DSFTSSSSSTATASGTGGGGGGGGDGNAMGVSAAAGIGGTGSGSPGTLFG
AIGAGGSGNALASGSDSSAANLGSFLNLGFGGFGGTGGAGTGTATSS*
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mRNA from alignment at tig00000061_pilon:95767..98881-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4642.t1 ID=Ggra4642.t1|Name=Ggra4642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3115bp|location=Sequence derived from alignment at tig00000061_pilon:95767..98881- (Gracilaria gracilis GNS1m male)
ATGCTCGCGCTTGAGTACGTAAATGTACTGTTCTTACAGCAGGGCTCCAT
TTGGGTGCAATAGAGAGAGCCTTGGGCTCTCAAGGCGGCAGCGTTGTTGC
GTAACACGTAATATTAGATGCGCAGGTTTCGGCGCACAAGATTGATGTAA
CTTTACAACATCAATCTTGTGGTCCGAAACCAAGATCAGGAAAAGATGAG
AGTGTAAGTTGCTTCGCTGCGGGTTGTGCACACGCAAAAGGTTTCGTAAC
AGGTGCATGATAATGATGATGATCATCATCATGATGGGCGCCATCACCTA
ACGACTTGTCAAACAATCGTACGGTAGGCAACGCTAATGAAAAAACCCCA
CCCCTCAAAACATTAATATACCATTGGAAGTCTTCCTTCTCAATCTTGTT
TGTTTGTGACAAATCTTGTCTCAATCTTGGATATCGCGTTTTCCCTCGTT
GCTTGGCCCCATCACGCAAGCAGTACTGTAACGCTTCCTTGCAATCCTGT
CATCTCTTACATCATCGGGCTATGTCCTCCGCAATCGCTGCTTCCATAGC
AGTCTGCTATAAGCCGCAGGCTTATAGCAGACTGCTGTCATCTGCCGATA
TTTTTGAGATATTATAACGTTCAGAGCAACAGCAAGAACCTCGTTTACGA
GCTTCAGACCTACCCAATTGGAGTGCGGTTGCTAATAAAGCTTACACTAA
AAACTACAAAAGAGAAACAAACTTGTAATCTCAACAAAATGGCCTAACCG
CAGGTGATATTTTATTGGAACGGTAGGGACTACTAGGGAGCAAGTTACGT
CCTCTATCAATATTCCTAAGATTCAATCTCGTTCGTGGGTTGCACAGTCC
GCTGAATTTGTGCTGGCAACCCAAAATTTTTGTGTGCCACTAGAGCTGCA
GCATCGTATATATGAGCTCGGTGAAGTGCTTCTCAGCTGCTCTCGAAGAC
CAATTCGCTCTCAACACTCGGGTCCTGCCGTCCTCATTTGTGTTGGTTCT
CATCTTATTTGAACAGTTTAACGTGCAACACAGGTTTGAACGTCAATCTT
TGAAACGACACGTATAGCGCCCAGGATAGTGATCTCACTATCCTCCTCCT
CATCATCATCATCATGGCGTCAGTCAGTTCTCATCGCATCTCCACCATCG
TTTTGGGCAACTGCGTAGAAGAAAGTTGCACTACACGCACATCAGTCTGA
GGGCCTGAAACCAAGTCCAGTAGCGCCAGACAATTTCGCAGCTGACAAAC
ACGACGCGCCAAACACACGCGCACGAACGTCCGCGCCTGTGGCTGTTTGC
CCATCAGTGATAAGTGAACAGCCACACTCACAATTCCGAACCAGTTAAAA
AAGGCAAGCTTTGAATCAGCGCCTGTCACAATCACAGCAGAATCTGCTGT
GTGGTTTACAACCTGATTGTACGATGAACCACATGTGGTTCACAACTCAC
TGTCTGCTATTCGGAATTTGGCCTCGGCCAGACAGCCCTGAGGTCATAGC
GTACGATATTTATTATACGACGTCCCTCTTCTCCGTCGAAGCAACGAGTC
CAAATTAACAACACCGATTCACCCGCAGCTCATTGAGATGTCGGTTTCAA
TAATTGCAATGACCTGTTTGCACCTGTCTGCCAAAGGCGTGGAGATCGTT
ATTAACTGTTAGCTTTGCATCATTCCAGGGCTTCGATTATCACACGCTCC
ACAGCAACGGTTGCTTACAGTAGAGTCGCTCAAGTTCTGCCACTCTTCAA
GCAAGCAGCTGATTCATATAAATGCGCATACTCCGTTCCAGCCTCACTCC
CACCAACGTGCCAAGCCGCCTTCCTCGATACTGAATCCCGATCTGCATCG
CGTGGAGAACAACATGAAGCGAAGGAGCACCATTCTCATTCTTTGCGCCA
TTGTGGCGTCTATCTTTCCGCAGTGCCTAGCGCAGGGGCCTGGCGGTGGC
ATGGGAATGGGACCTGGCGGTGGCATGGGGATGGGACCCGGCGGTGGCAT
GGGGATGGGACCTGGCGGTGGCATGGGGATGGGACCCGGCGGTGGCATGG
GGATGGGACCTGGCGGTGGCATGGGAATGGGACCTGGCGGTGGCATGGGA
ATGGGACCTGGCGGTGGAATGGGAATGGGACCTGGCGGTGGCATGGGAAT
GGGACCTGGCGGTGGCATGGGAATGGGACCTGGCGGTGGTCCTGCTGGTC
CTGCTGGTCCTGCTGGTCCTGCTGGTCCTGCTGGTCCTGCTGGCCCTACT
GGTCCTACTGGCCCTGCTGGTGGTGACGGCCCTGCTGGTCCTACCGGCCC
TGCTGGCCCTGCTGGCGGTGACGGTCCTGCTGGGCCTGCTGGGCCTGCTG
GTGGTGACGGCCCTGCCGGCCCTGCCGGCCCTACTGGCCCTGCTGGTCCT
GCTGGTGGTGACGGCCCTGCCGGCCCTGCTGGTCCTGCTGGTGGTGACGG
CCCTGCTGGGCCTGCCGGCCCTACTGGTCCTGCTGGTCCTGCTGGTGGTG
ACGGCCCTGCTGGGCCTGCCGGTCCCTACTGGTCCTGCTGGTCCTGCTGG
TGGTGACGGCCCTGCTGGGCCTGCCGGCCCTACTGGTCCTGCTGGTCCTG
CTGGTGGTGACGGCCCTGCTGGGCCTGCCGGCCCTACTGGTCCTGCTGGT
CCTGCTGGTGGTGACGGCCCTGCTGGTCCTGCCGGCCCTGCCGGCCCTGC
TGGCCCTGCCAGCCCTGGTGGTGGATTTTTGTTTCCTTTCCCGCTTTTTG
GAGGTCCAGCTGCGCCCGCTCCTGCGCCAGCTCCCGCTCCCGCTCCTGGT
TTTTCTTTCCCGCTCTCTGGAGATTCATTCACATCATCTTCTTCCTCGAC
CGCAACAGCAAGCGGTACAGGTGGTGGGGGAGGTGGTGGTGGTGATGGAA
ACGCTATGGGGGTGTCAGCTGCAGCTGGTATTGGTGGTACTGGCTCCGGA
AGTCCCGGCACTCTCTTCGGTGCAATTGGCGCAGGCGGATCTGGGAATGC
ATTAGCATCCGGCTCTGATTCTAGTGCAGCGAACCTTGGAAGTTTCCTCA
ACCTCGGGTTCGGTGGCTTTGGCGGTACCGGTGGAGCAGGTACCGGTACA
GCTACATCCAGTTAG
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Coding sequence (CDS) from alignment at tig00000061_pilon:95767..98881-

>Ggra4642.t1 ID=Ggra4642.t1|Name=Ggra4642.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00000061_pilon:95767..98881- (Gracilaria gracilis GNS1m male)
ATGCTCGCGCTTGAGGGCCTGGCGGTGGCATGGGAATGGGACCTGGCGGT
GGCATGGGGATGGGACCCGGCGGTGGCATGGGGATGGGACCTGGCGGTGG
CATGGGGATGGGACCCGGCGGTGGCATGGGGATGGGACCTGGCGGTGGCA
TGGGAATGGGACCTGGCGGTGGCATGGGAATGGGACCTGGCGGTGGAATG
GGAATGGGACCTGGCGGTGGCATGGGAATGGGACCTGGCGGTGGCATGGG
AATGGGACCTGGCGGTGGTCCTGCTGGTCCTGCTGGTCCTGCTGGTCCTG
CTGGTCCTGCTGGTCCTGCTGGCCCTACTGGTCCTACTGGCCCTGCTGGT
GGTGACGGCCCTGCTGGTCCTACCGGCCCTGCTGGCCCTGCTGGCGGTGA
CGGTCCTGCTGGGCCTGCTGGGCCTGCTGGTGGTGACGGCCCTGCCGGCC
CTGCCGGCCCTACTGGCCCTGCTGGTCCTGCTGGTGGTGACGGCCCTGCC
GGCCCTGCTGGTCCTGCTGGTGGTGACGGCCCTGCTGGGCCTGCCGGCCC
TACTGGTCCTGCTGGTCCTGCTGGTGGTGACGGCCCTGCTGGGCCTGCCG
GTCCCTACTGGTCCTGCTGGTCCTGCTGGTGGTGACGGCCCTGCTGGGCC
TGCCGGCCCTACTGGTCCTGCTGGTCCTGCTGGTGGTGACGGCCCTGCTG
GGCCTGCCGGCCCTACTGGTCCTGCTGGTCCTGCTGGTGGTGACGGCCCT
GCTGGTCCTGCCGGCCCTGCCGGCCCTGCTGGCCCTGCCAGCCCTGGTGG
TGGATTTTTGTTTCCTTTCCCGCTTTTTGGAGGTCCAGCTGCGCCCGCTC
CTGCGCCAGCTCCCGCTCCCGCTCCTGGTTTTTCTTTCCCGCTCTCTGGA
GATTCATTCACATCATCTTCTTCCTCGACCGCAACAGCAAGCGGTACAGG
TGGTGGGGGAGGTGGTGGTGGTGATGGAAACGCTATGGGGGTGTCAGCTG
CAGCTGGTATTGGTGGTACTGGCTCCGGAAGTCCCGGCACTCTCTTCGGT
GCAATTGGCGCAGGCGGATCTGGGAATGCATTAGCATCCGGCTCTGATTC
TAGTGCAGCGAACCTTGGAAGTTTCCTCAACCTCGGGTTCGGTGGCTTTG
GCGGTACCGGTGGAGCAGGTACCGGTACAGCTACATCCAGTTAG
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