Ggra4641.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4641.t1
Unique NameGgra4641.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000061_piloncontigtig00000061_pilon:85296..85961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog27923.ML006317a-PA
Max annot lvl2759|Eukaryota
Evalue1.76e-07
EggNOG OGs2E6RP@1|root,2SDEE@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4641Ggra4641Gracilaria gracilis GNS1m malegenetig00000061_pilon 85296..85961 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4641.t1.stop1Ggra4641.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000061_pilon 85296..85298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4641.t1.CDS1Ggra4641.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000061_pilon 85296..85961 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4641.t1.exon1Ggra4641.t1.exon1Gracilaria gracilis GNS1m maleexontig00000061_pilon 85296..85961 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4641.t1.start1Ggra4641.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000061_pilon 85959..85961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4641.t1Ggra4641.t1Gracilaria gracilis GNS1m malepolypeptidetig00000061_pilon 85296..85961 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4641.t1 ID=Ggra4641.t1|Name=Ggra4641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MPKLKRLRLDGVRLSAISFSATHMPALESVQISNPMGPRNDEVILDLALP
ELKELQIDYCRLDARSDLGLSLTRCTKLQSFLSHKMWFAYGPNYMVLPNC
TSFVLIRSEGTGQIEILSAPKLKMVNLACCYEMWRFRIWDLNKQITEKDV
KSLNGKRNQSPSRAPEVWKRFMDSLERRPQLYPLSSLPPCTVSHFNVDLE
DDSIAEAQGTRVHLTSEQVLF*
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spliced messenger RNA

>Ggra4641.t1 ID=Ggra4641.t1|Name=Ggra4641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000061_pilon:85296..85961- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAAGCTCAAGCGTCTGCGACTCGACGGCGTGCGTCTCAGCGCCAT
CTCCTTCTCCGCCACGCACATGCCCGCGCTCGAGAGCGTGCAGATCTCCA
ACCCGATGGGCCCGCGCAACGATGAGGTCATTTTGGACCTGGCATTGCCG
GAGTTGAAGGAGCTGCAGATTGACTACTGTCGCCTGGATGCTCGTTCCGA
TCTAGGGCTCAGTCTCACGCGCTGCACAAAGCTGCAGAGCTTCTTGTCGC
ACAAGATGTGGTTTGCGTACGGGCCCAACTACATGGTGCTGCCGAACTGT
ACCTCGTTTGTGCTGATACGCTCGGAGGGAACGGGGCAGATTGAGATTCT
GTCCGCGCCCAAACTGAAGATGGTCAACCTTGCGTGTTGTTATGAAATGT
GGCGCTTTCGCATCTGGGATCTCAATAAGCAAATCACGGAGAAGGACGTG
AAGAGCTTGAATGGAAAGAGGAACCAGAGCCCGAGTCGTGCGCCGGAGGT
GTGGAAACGCTTCATGGATTCGCTGGAACGGCGGCCACAGCTGTATCCAC
TGTCGTCGCTGCCGCCGTGTACCGTCTCCCATTTCAACGTGGATTTGGAG
GACGATTCTATTGCGGAGGCTCAAGGCACCAGAGTTCATCTTACCAGTGA
ACAAGTTCTGTTCTAG
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protein sequence of Ggra4641.t1

>Ggra4641.t1 ID=Ggra4641.t1|Name=Ggra4641.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MPKLKRLRLDGVRLSAISFSATHMPALESVQISNPMGPRNDEVILDLALP
ELKELQIDYCRLDARSDLGLSLTRCTKLQSFLSHKMWFAYGPNYMVLPNC
TSFVLIRSEGTGQIEILSAPKLKMVNLACCYEMWRFRIWDLNKQITEKDV
KSLNGKRNQSPSRAPEVWKRFMDSLERRPQLYPLSSLPPCTVSHFNVDLE
DDSIAEAQGTRVHLTSEQVLF*
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mRNA from alignment at tig00000061_pilon:85296..85961-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4641.t1 ID=Ggra4641.t1|Name=Ggra4641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000061_pilon:85296..85961- (Gracilaria gracilis GNS1m male)
ATGCCCAAGCTCAAGCGTCTGCGACTCGACGGCGTGCGTCTCAGCGCCAT
CTCCTTCTCCGCCACGCACATGCCCGCGCTCGAGAGCGTGCAGATCTCCA
ACCCGATGGGCCCGCGCAACGATGAGGTCATTTTGGACCTGGCATTGCCG
GAGTTGAAGGAGCTGCAGATTGACTACTGTCGCCTGGATGCTCGTTCCGA
TCTAGGGCTCAGTCTCACGCGCTGCACAAAGCTGCAGAGCTTCTTGTCGC
ACAAGATGTGGTTTGCGTACGGGCCCAACTACATGGTGCTGCCGAACTGT
ACCTCGTTTGTGCTGATACGCTCGGAGGGAACGGGGCAGATTGAGATTCT
GTCCGCGCCCAAACTGAAGATGGTCAACCTTGCGTGTTGTTATGAAATGT
GGCGCTTTCGCATCTGGGATCTCAATAAGCAAATCACGGAGAAGGACGTG
AAGAGCTTGAATGGAAAGAGGAACCAGAGCCCGAGTCGTGCGCCGGAGGT
GTGGAAACGCTTCATGGATTCGCTGGAACGGCGGCCACAGCTGTATCCAC
TGTCGTCGCTGCCGCCGTGTACCGTCTCCCATTTCAACGTGGATTTGGAG
GACGATTCTATTGCGGAGGCTCAAGGCACCAGAGTTCATCTTACCAGTGA
ACAAGTTCTGTTCTAG
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Coding sequence (CDS) from alignment at tig00000061_pilon:85296..85961-

>Ggra4641.t1 ID=Ggra4641.t1|Name=Ggra4641.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000061_pilon:85296..85961- (Gracilaria gracilis GNS1m male)
ATGCCCAAGCTCAAGCGTCTGCGACTCGACGGCGTGCGTCTCAGCGCCAT
CTCCTTCTCCGCCACGCACATGCCCGCGCTCGAGAGCGTGCAGATCTCCA
ACCCGATGGGCCCGCGCAACGATGAGGTCATTTTGGACCTGGCATTGCCG
GAGTTGAAGGAGCTGCAGATTGACTACTGTCGCCTGGATGCTCGTTCCGA
TCTAGGGCTCAGTCTCACGCGCTGCACAAAGCTGCAGAGCTTCTTGTCGC
ACAAGATGTGGTTTGCGTACGGGCCCAACTACATGGTGCTGCCGAACTGT
ACCTCGTTTGTGCTGATACGCTCGGAGGGAACGGGGCAGATTGAGATTCT
GTCCGCGCCCAAACTGAAGATGGTCAACCTTGCGTGTTGTTATGAAATGT
GGCGCTTTCGCATCTGGGATCTCAATAAGCAAATCACGGAGAAGGACGTG
AAGAGCTTGAATGGAAAGAGGAACCAGAGCCCGAGTCGTGCGCCGGAGGT
GTGGAAACGCTTCATGGATTCGCTGGAACGGCGGCCACAGCTGTATCCAC
TGTCGTCGCTGCCGCCGTGTACCGTCTCCCATTTCAACGTGGATTTGGAG
GACGATTCTATTGCGGAGGCTCAAGGCACCAGAGTTCATCTTACCAGTGA
ACAAGTTCTGTTCTAG
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