Ggra4640.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4640.t1
Unique NameGgra4640.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000061_piloncontigtig00000061_pilon:73896..74462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4640Ggra4640Gracilaria gracilis GNS1m malegenetig00000061_pilon 73896..74462 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4640.t1.stop1Ggra4640.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000061_pilon 73896..73898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4640.t1.CDS1Ggra4640.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000061_pilon 73896..74462 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4640.t1.exon1Ggra4640.t1.exon1Gracilaria gracilis GNS1m maleexontig00000061_pilon 73896..74462 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4640.t1.start1Ggra4640.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000061_pilon 74460..74462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4640.t1Ggra4640.t1Gracilaria gracilis GNS1m malepolypeptidetig00000061_pilon 73896..74462 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4640.t1 ID=Ggra4640.t1|Name=Ggra4640.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=189bp
MATNDSCQVNVCFAIDSNQFRYYADEIRSFVFNMTSALAAINNVKFAAVQ
HGEVLTQISNLTSDVDAFERAFLTTHLERNILSTASHGIWACTFELVAEV
GKMSKIIIMSAGANTFEGDPVQDASIFRRLLGEGASVSTDKVGSESVLAD
VQKLRDIARAGGGQMYKKDEFLSLSCDILDLVRDQGCL*
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spliced messenger RNA

>Ggra4640.t1 ID=Ggra4640.t1|Name=Ggra4640.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000061_pilon:73896..74462- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACCAACGACAGTTGCCAGGTTAATGTGTGCTTCGCGATTGACTC
AAATCAGTTTCGTTATTATGCTGATGAAATCAGAAGTTTCGTGTTCAACA
TGACGTCTGCTCTAGCTGCGATAAATAACGTCAAATTCGCTGCTGTACAG
CATGGAGAGGTACTCACTCAAATCTCAAACCTAACAAGTGATGTAGATGC
GTTTGAGCGAGCATTCCTAACAACACATCTGGAGAGGAATATATTAAGTA
CCGCCAGTCATGGAATATGGGCGTGCACGTTTGAGTTAGTGGCTGAAGTT
GGCAAAATGTCTAAGATTATTATAATGAGCGCGGGAGCTAACACTTTTGA
AGGCGATCCGGTGCAAGATGCGTCCATCTTCAGGCGATTGCTCGGCGAGG
GGGCCTCTGTTAGTACGGATAAGGTTGGCTCCGAGTCCGTGTTAGCAGAT
GTTCAGAAACTGCGTGACATTGCAAGAGCTGGAGGTGGTCAGATGTACAA
AAAGGATGAGTTTCTTTCTCTATCATGTGATATCCTAGACCTTGTGCGGG
ACCAGGGTTGTCTCTAA
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protein sequence of Ggra4640.t1

>Ggra4640.t1 ID=Ggra4640.t1|Name=Ggra4640.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MATNDSCQVNVCFAIDSNQFRYYADEIRSFVFNMTSALAAINNVKFAAVQ
HGEVLTQISNLTSDVDAFERAFLTTHLERNILSTASHGIWACTFELVAEV
GKMSKIIIMSAGANTFEGDPVQDASIFRRLLGEGASVSTDKVGSESVLAD
VQKLRDIARAGGGQMYKKDEFLSLSCDILDLVRDQGCL*
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mRNA from alignment at tig00000061_pilon:73896..74462-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4640.t1 ID=Ggra4640.t1|Name=Ggra4640.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000061_pilon:73896..74462- (Gracilaria gracilis GNS1m male)
ATGGCGACCAACGACAGTTGCCAGGTTAATGTGTGCTTCGCGATTGACTC
AAATCAGTTTCGTTATTATGCTGATGAAATCAGAAGTTTCGTGTTCAACA
TGACGTCTGCTCTAGCTGCGATAAATAACGTCAAATTCGCTGCTGTACAG
CATGGAGAGGTACTCACTCAAATCTCAAACCTAACAAGTGATGTAGATGC
GTTTGAGCGAGCATTCCTAACAACACATCTGGAGAGGAATATATTAAGTA
CCGCCAGTCATGGAATATGGGCGTGCACGTTTGAGTTAGTGGCTGAAGTT
GGCAAAATGTCTAAGATTATTATAATGAGCGCGGGAGCTAACACTTTTGA
AGGCGATCCGGTGCAAGATGCGTCCATCTTCAGGCGATTGCTCGGCGAGG
GGGCCTCTGTTAGTACGGATAAGGTTGGCTCCGAGTCCGTGTTAGCAGAT
GTTCAGAAACTGCGTGACATTGCAAGAGCTGGAGGTGGTCAGATGTACAA
AAAGGATGAGTTTCTTTCTCTATCATGTGATATCCTAGACCTTGTGCGGG
ACCAGGGTTGTCTCTAA
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Coding sequence (CDS) from alignment at tig00000061_pilon:73896..74462-

>Ggra4640.t1 ID=Ggra4640.t1|Name=Ggra4640.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00000061_pilon:73896..74462- (Gracilaria gracilis GNS1m male)
ATGGCGACCAACGACAGTTGCCAGGTTAATGTGTGCTTCGCGATTGACTC
AAATCAGTTTCGTTATTATGCTGATGAAATCAGAAGTTTCGTGTTCAACA
TGACGTCTGCTCTAGCTGCGATAAATAACGTCAAATTCGCTGCTGTACAG
CATGGAGAGGTACTCACTCAAATCTCAAACCTAACAAGTGATGTAGATGC
GTTTGAGCGAGCATTCCTAACAACACATCTGGAGAGGAATATATTAAGTA
CCGCCAGTCATGGAATATGGGCGTGCACGTTTGAGTTAGTGGCTGAAGTT
GGCAAAATGTCTAAGATTATTATAATGAGCGCGGGAGCTAACACTTTTGA
AGGCGATCCGGTGCAAGATGCGTCCATCTTCAGGCGATTGCTCGGCGAGG
GGGCCTCTGTTAGTACGGATAAGGTTGGCTCCGAGTCCGTGTTAGCAGAT
GTTCAGAAACTGCGTGACATTGCAAGAGCTGGAGGTGGTCAGATGTACAA
AAAGGATGAGTTTCTTTCTCTATCATGTGATATCCTAGACCTTGTGCGGG
ACCAGGGTTGTCTCTAA
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