Ggra4635.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4635.t1
Unique NameGgra4635.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:201036..202034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705100.1
Preferred nameSIL1
PFAMsFes1,SIL1
Max annot lvl2759|Eukaryota
KEGG koko:K14001,ko:K15196
KEGG Pathwayko04141,map04141
GOsGO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006457,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0017076,GO:0030234,GO:0030554,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0050790,GO:0051082,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0060589,GO:0060590,GO:0065002,GO:0065007,GO:0065009,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0098772,GO:1901265,GO:1901363
Evalue9.52e-10
EggNOG OGsCOG0197@1|root,KOG2160@2759|Eukaryota
Descriptionadenyl-nucleotide exchange factor activity
COG categoryJ
BRITEko00000,ko00001,ko03021,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4635Ggra4635Gracilaria gracilis GNS1m malegenetig00000941_pilon 201036..202034 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4635.t1.start1Ggra4635.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 201036..201038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4635.t1.CDS1Ggra4635.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 201036..202034 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4635.t1.exon1Ggra4635.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 201036..202034 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4635.t1.stop1Ggra4635.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 202032..202034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4635.t1Ggra4635.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 201036..202034 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4635.t1 ID=Ggra4635.t1|Name=Ggra4635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MLMFTRTIASTAAVLSSVSDDPLADTRQCEASEKEDHILCEASKVKQASI
DQIMEEDEASRSPPEAPSAGQDPWAAAYEQWIVGKNPTDRKKAVNRALEE
AMKRYPDARKPEDSKEEFQLPETGDDELTVITAAVHNISKSDATSERLRT
ALDIIEELCNSGDNGRQMQAAGGVPHLLRHASSVSTDISLLSVRALATCA
QNNPTVFDCAVDEGAIASMVKLADNGNDALRAASLRVLVAVADSKKSEEA
LEKEEAGIVKVVHDSLRKNSGTDGTRCQIRAFALVEQCLVRYQDTWKQIY
VSSGLVKVAEQALHSESIDVREGAARVLRMLR*
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spliced messenger RNA

>Ggra4635.t1 ID=Ggra4635.t1|Name=Ggra4635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000941_pilon:201036..202034+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCATGTTCACACGCACGATTGCTTCCACAGCTGCCGTGTTAAGTTC
TGTGTCGGATGACCCATTAGCTGACACTCGGCAATGCGAAGCAAGTGAAA
AAGAAGATCATATTCTCTGTGAGGCATCGAAAGTGAAGCAAGCGTCAATC
GACCAAATTATGGAAGAAGACGAAGCCTCGAGAAGTCCCCCAGAAGCCCC
TTCTGCGGGGCAGGACCCCTGGGCGGCGGCGTATGAACAGTGGATCGTTG
GAAAGAACCCGACTGATAGGAAAAAGGCTGTTAATCGGGCATTAGAGGAA
GCGATGAAGAGGTACCCGGACGCAAGGAAACCGGAAGACAGCAAAGAAGA
ATTTCAACTGCCGGAGACAGGCGATGACGAGCTCACAGTCATCACTGCCG
CGGTACACAATATTTCTAAGTCTGATGCCACAAGTGAACGATTGAGGACT
GCCTTAGACATCATTGAAGAGCTTTGCAATTCTGGTGATAATGGACGACA
AATGCAGGCAGCAGGTGGTGTTCCTCATTTGCTAAGACATGCTTCATCGG
TTTCTACAGATATATCGCTATTATCAGTTCGTGCACTCGCTACTTGTGCA
CAGAATAATCCGACTGTATTTGACTGTGCGGTGGACGAGGGTGCAATTGC
GTCTATGGTCAAACTGGCCGACAATGGTAACGACGCTCTTCGGGCGGCAT
CGCTGCGAGTGCTTGTCGCAGTCGCTGATTCGAAAAAATCTGAAGAAGCT
CTGGAGAAGGAGGAAGCTGGCATTGTGAAAGTTGTACATGACAGTTTGCG
CAAGAATTCAGGAACGGATGGAACCCGATGCCAAATCAGGGCCTTTGCAC
TCGTTGAGCAGTGCCTTGTAAGATACCAGGACACCTGGAAACAGATATAT
GTCTCATCGGGTCTCGTCAAAGTCGCTGAACAGGCTTTGCATAGTGAAAG
TATTGATGTGCGAGAAGGTGCTGCGAGGGTTCTACGCATGTTGAGGTGA
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protein sequence of Ggra4635.t1

>Ggra4635.t1 ID=Ggra4635.t1|Name=Ggra4635.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MLMFTRTIASTAAVLSSVSDDPLADTRQCEASEKEDHILCEASKVKQASI
DQIMEEDEASRSPPEAPSAGQDPWAAAYEQWIVGKNPTDRKKAVNRALEE
AMKRYPDARKPEDSKEEFQLPETGDDELTVITAAVHNISKSDATSERLRT
ALDIIEELCNSGDNGRQMQAAGGVPHLLRHASSVSTDISLLSVRALATCA
QNNPTVFDCAVDEGAIASMVKLADNGNDALRAASLRVLVAVADSKKSEEA
LEKEEAGIVKVVHDSLRKNSGTDGTRCQIRAFALVEQCLVRYQDTWKQIY
VSSGLVKVAEQALHSESIDVREGAARVLRMLR*
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mRNA from alignment at tig00000941_pilon:201036..202034+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4635.t1 ID=Ggra4635.t1|Name=Ggra4635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000941_pilon:201036..202034+ (Gracilaria gracilis GNS1m male)
ATGCTCATGTTCACACGCACGATTGCTTCCACAGCTGCCGTGTTAAGTTC
TGTGTCGGATGACCCATTAGCTGACACTCGGCAATGCGAAGCAAGTGAAA
AAGAAGATCATATTCTCTGTGAGGCATCGAAAGTGAAGCAAGCGTCAATC
GACCAAATTATGGAAGAAGACGAAGCCTCGAGAAGTCCCCCAGAAGCCCC
TTCTGCGGGGCAGGACCCCTGGGCGGCGGCGTATGAACAGTGGATCGTTG
GAAAGAACCCGACTGATAGGAAAAAGGCTGTTAATCGGGCATTAGAGGAA
GCGATGAAGAGGTACCCGGACGCAAGGAAACCGGAAGACAGCAAAGAAGA
ATTTCAACTGCCGGAGACAGGCGATGACGAGCTCACAGTCATCACTGCCG
CGGTACACAATATTTCTAAGTCTGATGCCACAAGTGAACGATTGAGGACT
GCCTTAGACATCATTGAAGAGCTTTGCAATTCTGGTGATAATGGACGACA
AATGCAGGCAGCAGGTGGTGTTCCTCATTTGCTAAGACATGCTTCATCGG
TTTCTACAGATATATCGCTATTATCAGTTCGTGCACTCGCTACTTGTGCA
CAGAATAATCCGACTGTATTTGACTGTGCGGTGGACGAGGGTGCAATTGC
GTCTATGGTCAAACTGGCCGACAATGGTAACGACGCTCTTCGGGCGGCAT
CGCTGCGAGTGCTTGTCGCAGTCGCTGATTCGAAAAAATCTGAAGAAGCT
CTGGAGAAGGAGGAAGCTGGCATTGTGAAAGTTGTACATGACAGTTTGCG
CAAGAATTCAGGAACGGATGGAACCCGATGCCAAATCAGGGCCTTTGCAC
TCGTTGAGCAGTGCCTTGTAAGATACCAGGACACCTGGAAACAGATATAT
GTCTCATCGGGTCTCGTCAAAGTCGCTGAACAGGCTTTGCATAGTGAAAG
TATTGATGTGCGAGAAGGTGCTGCGAGGGTTCTACGCATGTTGAGGTGA
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Coding sequence (CDS) from alignment at tig00000941_pilon:201036..202034+

>Ggra4635.t1 ID=Ggra4635.t1|Name=Ggra4635.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000941_pilon:201036..202034+ (Gracilaria gracilis GNS1m male)
ATGCTCATGTTCACACGCACGATTGCTTCCACAGCTGCCGTGTTAAGTTC
TGTGTCGGATGACCCATTAGCTGACACTCGGCAATGCGAAGCAAGTGAAA
AAGAAGATCATATTCTCTGTGAGGCATCGAAAGTGAAGCAAGCGTCAATC
GACCAAATTATGGAAGAAGACGAAGCCTCGAGAAGTCCCCCAGAAGCCCC
TTCTGCGGGGCAGGACCCCTGGGCGGCGGCGTATGAACAGTGGATCGTTG
GAAAGAACCCGACTGATAGGAAAAAGGCTGTTAATCGGGCATTAGAGGAA
GCGATGAAGAGGTACCCGGACGCAAGGAAACCGGAAGACAGCAAAGAAGA
ATTTCAACTGCCGGAGACAGGCGATGACGAGCTCACAGTCATCACTGCCG
CGGTACACAATATTTCTAAGTCTGATGCCACAAGTGAACGATTGAGGACT
GCCTTAGACATCATTGAAGAGCTTTGCAATTCTGGTGATAATGGACGACA
AATGCAGGCAGCAGGTGGTGTTCCTCATTTGCTAAGACATGCTTCATCGG
TTTCTACAGATATATCGCTATTATCAGTTCGTGCACTCGCTACTTGTGCA
CAGAATAATCCGACTGTATTTGACTGTGCGGTGGACGAGGGTGCAATTGC
GTCTATGGTCAAACTGGCCGACAATGGTAACGACGCTCTTCGGGCGGCAT
CGCTGCGAGTGCTTGTCGCAGTCGCTGATTCGAAAAAATCTGAAGAAGCT
CTGGAGAAGGAGGAAGCTGGCATTGTGAAAGTTGTACATGACAGTTTGCG
CAAGAATTCAGGAACGGATGGAACCCGATGCCAAATCAGGGCCTTTGCAC
TCGTTGAGCAGTGCCTTGTAAGATACCAGGACACCTGGAAACAGATATAT
GTCTCATCGGGTCTCGTCAAAGTCGCTGAACAGGCTTTGCATAGTGAAAG
TATTGATGTGCGAGAAGGTGCTGCGAGGGTTCTACGCATGTTGAGGTGA
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