Ggra4628.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4628.t1
Unique NameGgra4628.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:169806..170861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705724.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG rclassRC00017,RC00425
KEGG koko:K05857,ko:K14684,ko:K15111
KEGG TC2.A.29.18,2.A.29.23
KEGG ReactionR03332,R03435,R10952
KEGG Pathwayko00562,ko01100,ko04020,ko04070,ko04919,ko04933,map00562,map01100,map04020,map04070,map04919,map04933
KEGG ModuleM00130
Evalue3.36e-56
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
EC3.1.4.11
DescriptionS-adenosyl-L-methionine transmembrane transport
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4628Ggra4628Gracilaria gracilis GNS1m malegenetig00000941_pilon 169806..170861 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4628.t1.start1Ggra4628.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 169806..169808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4628.t1.CDS1Ggra4628.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 169806..170861 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4628.t1.exon1Ggra4628.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 169806..170861 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4628.t1.stop1Ggra4628.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 170859..170861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4628.t1Ggra4628.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 169806..170861 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4628.t1 ID=Ggra4628.t1|Name=Ggra4628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=352bp
MSSMLRAVDFGVASVNVPNVRFSKRPATKLRHESPPIRVSASSTTKSLSI
PENLACGAIGRTAQIISTFPIDTIKIRVQVSGISVSSSSVAVSPISRITS
AITRGHLYRGAAVSLMGQVPYGMLTFGIYESLKTFVAQSELHTLPEWMKT
ALCATIGDAIGSLWLTPSEVVKSKTQAGVFASPTQAISHISKQGPLAFYQ
GYSAAIARDIPFRIIQLLMFERSRAWYMKRTNKTVDQISPIENLLIGAFA
GTITGASTCPLDVIRTRMMSQPKGTYKNVIDCVAKLLAKDGPGALIRGII
PRCFVIGPSSAIFFFTFEAAKAFFRARKASPALRRASNSGICSRRPQVSL
C*
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spliced messenger RNA

>Ggra4628.t1 ID=Ggra4628.t1|Name=Ggra4628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000941_pilon:169806..170861+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAGCATGTTACGCGCCGTTGACTTTGGTGTCGCAAGCGTTAATGT
TCCGAACGTTCGTTTCAGCAAGAGACCCGCTACTAAACTTCGCCATGAGT
CGCCACCGATACGTGTATCTGCGTCAAGCACCACCAAGTCACTATCCATT
CCCGAAAATCTCGCGTGCGGCGCGATAGGGCGTACGGCCCAGATCATTTC
TACTTTTCCTATCGATACCATCAAGATCAGGGTTCAAGTCTCAGGCATAT
CGGTCTCGTCATCGTCGGTTGCAGTCTCACCCATTTCACGTATTACATCT
GCAATCACTCGAGGTCATTTATACCGCGGTGCCGCAGTATCGCTCATGGG
ACAGGTTCCTTATGGAATGCTCACGTTCGGTATCTATGAAAGCTTGAAGA
CCTTCGTTGCGCAGTCAGAATTGCATACTCTGCCAGAATGGATGAAGACA
GCATTGTGCGCAACTATTGGCGATGCTATTGGTTCATTGTGGCTCACTCC
TTCAGAGGTTGTCAAATCGAAGACACAGGCCGGTGTGTTTGCATCGCCAA
CGCAGGCAATCTCCCACATTTCCAAACAGGGGCCATTGGCGTTCTACCAA
GGCTACTCTGCAGCGATCGCAAGAGACATTCCGTTTCGCATTATTCAACT
CTTAATGTTCGAGCGTTCTCGAGCCTGGTACATGAAGCGAACAAACAAGA
CCGTTGACCAAATCAGTCCCATTGAAAACCTTTTGATTGGCGCGTTTGCG
GGAACTATCACTGGCGCCTCAACATGTCCGCTCGATGTGATTCGCACAAG
AATGATGTCACAACCGAAGGGGACTTATAAAAATGTTATTGACTGCGTGG
CCAAACTGCTGGCGAAGGATGGACCGGGTGCTCTCATCAGAGGTATAATT
CCGAGATGTTTTGTCATTGGCCCTTCTAGTGCAATTTTCTTTTTCACGTT
TGAAGCGGCAAAAGCGTTTTTCCGAGCTAGAAAAGCTTCTCCTGCGCTGC
GGCGCGCGTCCAATTCGGGCATCTGCTCGAGACGACCACAAGTCTCACTG
TGTTAA
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protein sequence of Ggra4628.t1

>Ggra4628.t1 ID=Ggra4628.t1|Name=Ggra4628.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MSSMLRAVDFGVASVNVPNVRFSKRPATKLRHESPPIRVSASSTTKSLSI
PENLACGAIGRTAQIISTFPIDTIKIRVQVSGISVSSSSVAVSPISRITS
AITRGHLYRGAAVSLMGQVPYGMLTFGIYESLKTFVAQSELHTLPEWMKT
ALCATIGDAIGSLWLTPSEVVKSKTQAGVFASPTQAISHISKQGPLAFYQ
GYSAAIARDIPFRIIQLLMFERSRAWYMKRTNKTVDQISPIENLLIGAFA
GTITGASTCPLDVIRTRMMSQPKGTYKNVIDCVAKLLAKDGPGALIRGII
PRCFVIGPSSAIFFFTFEAAKAFFRARKASPALRRASNSGICSRRPQVSL
C*
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mRNA from alignment at tig00000941_pilon:169806..170861+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4628.t1 ID=Ggra4628.t1|Name=Ggra4628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000941_pilon:169806..170861+ (Gracilaria gracilis GNS1m male)
ATGTCGAGCATGTTACGCGCCGTTGACTTTGGTGTCGCAAGCGTTAATGT
TCCGAACGTTCGTTTCAGCAAGAGACCCGCTACTAAACTTCGCCATGAGT
CGCCACCGATACGTGTATCTGCGTCAAGCACCACCAAGTCACTATCCATT
CCCGAAAATCTCGCGTGCGGCGCGATAGGGCGTACGGCCCAGATCATTTC
TACTTTTCCTATCGATACCATCAAGATCAGGGTTCAAGTCTCAGGCATAT
CGGTCTCGTCATCGTCGGTTGCAGTCTCACCCATTTCACGTATTACATCT
GCAATCACTCGAGGTCATTTATACCGCGGTGCCGCAGTATCGCTCATGGG
ACAGGTTCCTTATGGAATGCTCACGTTCGGTATCTATGAAAGCTTGAAGA
CCTTCGTTGCGCAGTCAGAATTGCATACTCTGCCAGAATGGATGAAGACA
GCATTGTGCGCAACTATTGGCGATGCTATTGGTTCATTGTGGCTCACTCC
TTCAGAGGTTGTCAAATCGAAGACACAGGCCGGTGTGTTTGCATCGCCAA
CGCAGGCAATCTCCCACATTTCCAAACAGGGGCCATTGGCGTTCTACCAA
GGCTACTCTGCAGCGATCGCAAGAGACATTCCGTTTCGCATTATTCAACT
CTTAATGTTCGAGCGTTCTCGAGCCTGGTACATGAAGCGAACAAACAAGA
CCGTTGACCAAATCAGTCCCATTGAAAACCTTTTGATTGGCGCGTTTGCG
GGAACTATCACTGGCGCCTCAACATGTCCGCTCGATGTGATTCGCACAAG
AATGATGTCACAACCGAAGGGGACTTATAAAAATGTTATTGACTGCGTGG
CCAAACTGCTGGCGAAGGATGGACCGGGTGCTCTCATCAGAGGTATAATT
CCGAGATGTTTTGTCATTGGCCCTTCTAGTGCAATTTTCTTTTTCACGTT
TGAAGCGGCAAAAGCGTTTTTCCGAGCTAGAAAAGCTTCTCCTGCGCTGC
GGCGCGCGTCCAATTCGGGCATCTGCTCGAGACGACCACAAGTCTCACTG
TGTTAA
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Coding sequence (CDS) from alignment at tig00000941_pilon:169806..170861+

>Ggra4628.t1 ID=Ggra4628.t1|Name=Ggra4628.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000941_pilon:169806..170861+ (Gracilaria gracilis GNS1m male)
ATGTCGAGCATGTTACGCGCCGTTGACTTTGGTGTCGCAAGCGTTAATGT
TCCGAACGTTCGTTTCAGCAAGAGACCCGCTACTAAACTTCGCCATGAGT
CGCCACCGATACGTGTATCTGCGTCAAGCACCACCAAGTCACTATCCATT
CCCGAAAATCTCGCGTGCGGCGCGATAGGGCGTACGGCCCAGATCATTTC
TACTTTTCCTATCGATACCATCAAGATCAGGGTTCAAGTCTCAGGCATAT
CGGTCTCGTCATCGTCGGTTGCAGTCTCACCCATTTCACGTATTACATCT
GCAATCACTCGAGGTCATTTATACCGCGGTGCCGCAGTATCGCTCATGGG
ACAGGTTCCTTATGGAATGCTCACGTTCGGTATCTATGAAAGCTTGAAGA
CCTTCGTTGCGCAGTCAGAATTGCATACTCTGCCAGAATGGATGAAGACA
GCATTGTGCGCAACTATTGGCGATGCTATTGGTTCATTGTGGCTCACTCC
TTCAGAGGTTGTCAAATCGAAGACACAGGCCGGTGTGTTTGCATCGCCAA
CGCAGGCAATCTCCCACATTTCCAAACAGGGGCCATTGGCGTTCTACCAA
GGCTACTCTGCAGCGATCGCAAGAGACATTCCGTTTCGCATTATTCAACT
CTTAATGTTCGAGCGTTCTCGAGCCTGGTACATGAAGCGAACAAACAAGA
CCGTTGACCAAATCAGTCCCATTGAAAACCTTTTGATTGGCGCGTTTGCG
GGAACTATCACTGGCGCCTCAACATGTCCGCTCGATGTGATTCGCACAAG
AATGATGTCACAACCGAAGGGGACTTATAAAAATGTTATTGACTGCGTGG
CCAAACTGCTGGCGAAGGATGGACCGGGTGCTCTCATCAGAGGTATAATT
CCGAGATGTTTTGTCATTGGCCCTTCTAGTGCAATTTTCTTTTTCACGTT
TGAAGCGGCAAAAGCGTTTTTCCGAGCTAGAAAAGCTTCTCCTGCGCTGC
GGCGCGCGTCCAATTCGGGCATCTGCTCGAGACGACCACAAGTCTCACTG
TGTTAA
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