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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005706631.1 |
| Preferred name | RAD4 |
| PFAMs | BHD_1,BHD_2,BHD_3,Rad4,Transglut_core |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K10838 |
| KEGG Pathway | ko03420,map03420 |
| GOs | GO:0000109,GO:0000111,GO:0000217,GO:0000404,GO:0000405,GO:0000715,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007346,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0010564,GO:0016020,GO:0016043,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0032135,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034644,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051716,GO:0051726,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0071944,GO:0090304,GO:0097159,GO:0104004,GO:1901360,GO:1901363,GO:1901987,GO:1901990,GO:1990391 |
| Evalue | 2.63e-54 |
| EggNOG OGs | COG5535@1|root,KOG2179@2759|Eukaryota |
| Description | mismatch repair |
| COG category | L |
| BRITE | ko00000,ko00001,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra4627.t1.stop1 | Ggra4627.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000941_pilon 165832..165834 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra4627.t1.start1 | Ggra4627.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000941_pilon 168136..168138 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra4627.t1 ID=Ggra4627.t1|Name=Ggra4627.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=769bp MSDSEPQRTLNGFSQNAVRRAVTSARKRKGSALTSQYSPVVHATGSSSNT HVARVPYHKRRKTSLITNAEGSDDDDSNDEWEEHVHVDQSTVNAVGASVD ANADKSTGDARVPESKEGGQRLEEQKKKLSEREKSKMRRKLAAKLRRSRL RIHTVHLVLLASHMLRQDAAANHSLCRAVALSVLPEDTFLHTDDLKQNFA RFMLWMRSTFQMSVLVTQQGDLRSQCVFTRACNASERVISCAQKAQGELI DIASLACALVRAQNLRCRLVLALQPVEFRVKQSKKEQPYSARHQVVDARA SDITESVLYAWIEVWSPEDSAWIVGDVFSGQVNQGYSRNVIDVGLLSAPI FDSKLMGADAIEKNTPRRRTRRQQSTRRKKQQQSNDPIRRVKEQYYSHVV AVENGRLTDVSRRYVRNWLQAEDCRAKGKVFENVLKNLSISSDVEGDKAL QSELEEFESISAEEKIPTTMTAVQKHPRYILERHVKRYELIWPREPIVGY IKEEPIFLRANVKLLHTKDRWIREMREVKQNSKAMKSVKSKNGTDTQVHL FGDWQTKPLEIAPCKDGKVPRGVRGNVDLWTPDHLPDGAEHVNVPYAKVA ARKVEVDFAPAMTGFDIRGGRSIPRIEGVVVAAENADVVRDAAREIGRVA HERAEKRAKEEALAKWAKLLRAVKMGQKVRKKYGGVSSSTFEADQKREGL KKAAREKGGSSRLQAMNKRCEDGDEAAAEKLKVGKEHEHVFDEGVHVEGD TWSKKCSVCELEVCFERL* back to topspliced messenger RNA >Ggra4627.t1 ID=Ggra4627.t1|Name=Ggra4627.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2307bp|location=Sequence derived from alignment at tig00000941_pilon:165832..168138- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGAGTGATTCTGAACCGCAGAGAACACTGAACGGTTTCTCGCAGAACGC CGTCCGTCGCGCCGTCACATCCGCTCGTAAACGAAAAGGGAGTGCGCTAA CATCCCAATACTCGCCTGTGGTACACGCCACTGGTTCGTCTTCAAACACA CATGTGGCGCGAGTGCCGTATCACAAACGACGGAAAACATCTCTGATTAC AAATGCAGAGGGCTCAGATGATGATGATTCGAACGATGAATGGGAGGAAC ATGTTCATGTTGATCAGAGCACTGTGAATGCCGTTGGGGCTTCAGTGGAC GCCAATGCGGATAAGAGCACAGGTGACGCCCGAGTCCCTGAGTCGAAGGA AGGAGGCCAGCGACTTGAAGAACAAAAGAAAAAACTCTCAGAACGAGAGA AGAGTAAAATGCGGCGAAAGCTCGCCGCAAAGCTCAGAAGGTCTCGTCTT CGCATCCATACTGTGCATTTAGTTTTGCTTGCTTCGCACATGTTGCGACA AGATGCTGCTGCGAATCATTCCCTTTGCCGTGCTGTGGCCCTGAGCGTTC TACCCGAAGATACGTTTCTGCACACAGATGACCTTAAACAAAACTTTGCA CGATTTATGTTGTGGATGCGTTCCACATTTCAAATGTCTGTCCTCGTCAC TCAACAAGGAGACCTGCGATCACAATGTGTGTTTACAAGAGCATGCAATG CGTCGGAACGAGTCATTTCGTGTGCACAGAAGGCCCAGGGAGAGTTGATA GATATTGCATCTCTTGCATGTGCTCTTGTCAGAGCACAAAACCTTCGATG TAGGCTTGTGTTGGCGTTGCAACCTGTGGAATTTCGTGTTAAGCAAAGTA AGAAGGAGCAACCATATAGTGCTAGACATCAAGTCGTTGATGCCCGAGCA AGCGATATTACAGAATCTGTTTTGTACGCATGGATTGAGGTTTGGTCACC TGAAGATTCGGCGTGGATTGTTGGTGACGTTTTCAGCGGGCAGGTTAATC AGGGATATTCTCGAAACGTTATAGATGTTGGGCTCCTTTCTGCACCTATT TTCGACAGCAAACTCATGGGTGCAGACGCTATCGAGAAGAACACTCCCAG GCGCAGAACCCGTCGACAACAGAGCACTCGTCGCAAAAAGCAGCAGCAAT CCAACGACCCCATTCGTCGGGTCAAGGAGCAGTACTACTCTCATGTTGTT GCGGTTGAAAATGGCCGTCTCACAGATGTTTCCCGACGCTACGTGCGCAA CTGGTTGCAGGCTGAAGATTGTAGAGCGAAAGGGAAAGTGTTCGAAAACG TTTTGAAGAACTTGAGTATTTCTTCTGACGTTGAAGGCGACAAAGCTTTG CAAAGTGAACTAGAGGAGTTTGAATCGATTTCTGCGGAAGAGAAGATCCC CACGACTATGACAGCAGTACAAAAGCACCCAAGATATATTCTGGAGAGAC ATGTAAAAAGGTATGAGCTTATATGGCCCAGGGAACCTATTGTTGGCTAC ATCAAAGAGGAACCCATTTTCTTGAGAGCAAATGTTAAACTGTTGCATAC AAAGGATCGCTGGATCAGAGAGATGAGAGAGGTGAAGCAAAACTCCAAGG CAATGAAGTCAGTCAAGTCAAAGAATGGCACCGATACGCAGGTGCATTTG TTTGGGGACTGGCAGACAAAACCTCTGGAAATAGCTCCGTGCAAGGACGG AAAGGTGCCTCGCGGTGTTCGCGGAAACGTTGATCTATGGACACCTGATC ACTTGCCAGACGGGGCGGAACATGTTAATGTACCGTACGCAAAAGTGGCG GCAAGAAAAGTGGAAGTTGACTTTGCACCGGCGATGACTGGGTTTGATAT TAGAGGTGGGAGATCAATTCCACGCATAGAGGGGGTGGTTGTGGCTGCAG AAAACGCTGATGTGGTTCGAGATGCCGCGCGAGAAATTGGGAGAGTTGCA CATGAGAGAGCTGAAAAGCGTGCGAAAGAAGAGGCTTTGGCAAAGTGGGC AAAATTACTGCGAGCTGTGAAGATGGGCCAGAAAGTGAGGAAGAAGTACG GTGGAGTGAGCAGTAGTACTTTTGAAGCAGATCAAAAGAGGGAAGGTTTG AAAAAGGCTGCGAGAGAAAAGGGAGGGTCGAGTAGACTGCAGGCGATGAA CAAACGTTGCGAGGACGGTGATGAGGCTGCGGCTGAAAAACTAAAGGTAG GAAAGGAGCACGAACACGTTTTTGATGAAGGGGTGCACGTTGAAGGGGAT ACGTGGTCAAAGAAGTGTAGCGTTTGTGAACTTGAGGTTTGTTTTGAAAG ATTATAG back to topprotein sequence of Ggra4627.t1 >Ggra4627.t1 ID=Ggra4627.t1|Name=Ggra4627.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=769bp
MSDSEPQRTLNGFSQNAVRRAVTSARKRKGSALTSQYSPVVHATGSSSNT HVARVPYHKRRKTSLITNAEGSDDDDSNDEWEEHVHVDQSTVNAVGASVD ANADKSTGDARVPESKEGGQRLEEQKKKLSEREKSKMRRKLAAKLRRSRL RIHTVHLVLLASHMLRQDAAANHSLCRAVALSVLPEDTFLHTDDLKQNFA RFMLWMRSTFQMSVLVTQQGDLRSQCVFTRACNASERVISCAQKAQGELI DIASLACALVRAQNLRCRLVLALQPVEFRVKQSKKEQPYSARHQVVDARA SDITESVLYAWIEVWSPEDSAWIVGDVFSGQVNQGYSRNVIDVGLLSAPI FDSKLMGADAIEKNTPRRRTRRQQSTRRKKQQQSNDPIRRVKEQYYSHVV AVENGRLTDVSRRYVRNWLQAEDCRAKGKVFENVLKNLSISSDVEGDKAL QSELEEFESISAEEKIPTTMTAVQKHPRYILERHVKRYELIWPREPIVGY IKEEPIFLRANVKLLHTKDRWIREMREVKQNSKAMKSVKSKNGTDTQVHL FGDWQTKPLEIAPCKDGKVPRGVRGNVDLWTPDHLPDGAEHVNVPYAKVA ARKVEVDFAPAMTGFDIRGGRSIPRIEGVVVAAENADVVRDAAREIGRVA HERAEKRAKEEALAKWAKLLRAVKMGQKVRKKYGGVSSSTFEADQKREGL KKAAREKGGSSRLQAMNKRCEDGDEAAAEKLKVGKEHEHVFDEGVHVEGD TWSKKCSVCELEVCFERL* back to topmRNA from alignment at tig00000941_pilon:165832..168138- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra4627.t1 ID=Ggra4627.t1|Name=Ggra4627.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2307bp|location=Sequence derived from alignment at tig00000941_pilon:165832..168138- (Gracilaria gracilis GNS1m male) ATGAGTGATTCTGAACCGCAGAGAACACTGAACGGTTTCTCGCAGAACGC
CGTCCGTCGCGCCGTCACATCCGCTCGTAAACGAAAAGGGAGTGCGCTAA
CATCCCAATACTCGCCTGTGGTACACGCCACTGGTTCGTCTTCAAACACA
CATGTGGCGCGAGTGCCGTATCACAAACGACGGAAAACATCTCTGATTAC
AAATGCAGAGGGCTCAGATGATGATGATTCGAACGATGAATGGGAGGAAC
ATGTTCATGTTGATCAGAGCACTGTGAATGCCGTTGGGGCTTCAGTGGAC
GCCAATGCGGATAAGAGCACAGGTGACGCCCGAGTCCCTGAGTCGAAGGA
AGGAGGCCAGCGACTTGAAGAACAAAAGAAAAAACTCTCAGAACGAGAGA
AGAGTAAAATGCGGCGAAAGCTCGCCGCAAAGCTCAGAAGGTCTCGTCTT
CGCATCCATACTGTGCATTTAGTTTTGCTTGCTTCGCACATGTTGCGACA
AGATGCTGCTGCGAATCATTCCCTTTGCCGTGCTGTGGCCCTGAGCGTTC
TACCCGAAGATACGTTTCTGCACACAGATGACCTTAAACAAAACTTTGCA
CGATTTATGTTGTGGATGCGTTCCACATTTCAAATGTCTGTCCTCGTCAC
TCAACAAGGAGACCTGCGATCACAATGTGTGTTTACAAGAGCATGCAATG
CGTCGGAACGAGTCATTTCGTGTGCACAGAAGGCCCAGGGAGAGTTGATA
GATATTGCATCTCTTGCATGTGCTCTTGTCAGAGCACAAAACCTTCGATG
TAGGCTTGTGTTGGCGTTGCAACCTGTGGAATTTCGTGTTAAGCAAAGTA
AGAAGGAGCAACCATATAGTGCTAGACATCAAGTCGTTGATGCCCGAGCA
AGCGATATTACAGAATCTGTTTTGTACGCATGGATTGAGGTTTGGTCACC
TGAAGATTCGGCGTGGATTGTTGGTGACGTTTTCAGCGGGCAGGTTAATC
AGGGATATTCTCGAAACGTTATAGATGTTGGGCTCCTTTCTGCACCTATT
TTCGACAGCAAACTCATGGGTGCAGACGCTATCGAGAAGAACACTCCCAG
GCGCAGAACCCGTCGACAACAGAGCACTCGTCGCAAAAAGCAGCAGCAAT
CCAACGACCCCATTCGTCGGGTCAAGGAGCAGTACTACTCTCATGTTGTT
GCGGTTGAAAATGGCCGTCTCACAGATGTTTCCCGACGCTACGTGCGCAA
CTGGTTGCAGGCTGAAGATTGTAGAGCGAAAGGGAAAGTGTTCGAAAACG
TTTTGAAGAACTTGAGTATTTCTTCTGACGTTGAAGGCGACAAAGCTTTG
CAAAGTGAACTAGAGGAGTTTGAATCGATTTCTGCGGAAGAGAAGATCCC
CACGACTATGACAGCAGTACAAAAGCACCCAAGATATATTCTGGAGAGAC
ATGTAAAAAGGTATGAGCTTATATGGCCCAGGGAACCTATTGTTGGCTAC
ATCAAAGAGGAACCCATTTTCTTGAGAGCAAATGTTAAACTGTTGCATAC
AAAGGATCGCTGGATCAGAGAGATGAGAGAGGTGAAGCAAAACTCCAAGG
CAATGAAGTCAGTCAAGTCAAAGAATGGCACCGATACGCAGGTGCATTTG
TTTGGGGACTGGCAGACAAAACCTCTGGAAATAGCTCCGTGCAAGGACGG
AAAGGTGCCTCGCGGTGTTCGCGGAAACGTTGATCTATGGACACCTGATC
ACTTGCCAGACGGGGCGGAACATGTTAATGTACCGTACGCAAAAGTGGCG
GCAAGAAAAGTGGAAGTTGACTTTGCACCGGCGATGACTGGGTTTGATAT
TAGAGGTGGGAGATCAATTCCACGCATAGAGGGGGTGGTTGTGGCTGCAG
AAAACGCTGATGTGGTTCGAGATGCCGCGCGAGAAATTGGGAGAGTTGCA
CATGAGAGAGCTGAAAAGCGTGCGAAAGAAGAGGCTTTGGCAAAGTGGGC
AAAATTACTGCGAGCTGTGAAGATGGGCCAGAAAGTGAGGAAGAAGTACG
GTGGAGTGAGCAGTAGTACTTTTGAAGCAGATCAAAAGAGGGAAGGTTTG
AAAAAGGCTGCGAGAGAAAAGGGAGGGTCGAGTAGACTGCAGGCGATGAA
CAAACGTTGCGAGGACGGTGATGAGGCTGCGGCTGAAAAACTAAAGGTAG
GAAAGGAGCACGAACACGTTTTTGATGAAGGGGTGCACGTTGAAGGGGAT
ACGTGGTCAAAGAAGTGTAGCGTTTGTGAACTTGAGGTTTGTTTTGAAAG
ATTATAG back to topCoding sequence (CDS) from alignment at tig00000941_pilon:165832..168138- >Ggra4627.t1 ID=Ggra4627.t1|Name=Ggra4627.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2307bp|location=Sequence derived from alignment at tig00000941_pilon:165832..168138- (Gracilaria gracilis GNS1m male) ATGAGTGATTCTGAACCGCAGAGAACACTGAACGGTTTCTCGCAGAACGC CGTCCGTCGCGCCGTCACATCCGCTCGTAAACGAAAAGGGAGTGCGCTAA CATCCCAATACTCGCCTGTGGTACACGCCACTGGTTCGTCTTCAAACACA CATGTGGCGCGAGTGCCGTATCACAAACGACGGAAAACATCTCTGATTAC AAATGCAGAGGGCTCAGATGATGATGATTCGAACGATGAATGGGAGGAAC ATGTTCATGTTGATCAGAGCACTGTGAATGCCGTTGGGGCTTCAGTGGAC GCCAATGCGGATAAGAGCACAGGTGACGCCCGAGTCCCTGAGTCGAAGGA AGGAGGCCAGCGACTTGAAGAACAAAAGAAAAAACTCTCAGAACGAGAGA AGAGTAAAATGCGGCGAAAGCTCGCCGCAAAGCTCAGAAGGTCTCGTCTT CGCATCCATACTGTGCATTTAGTTTTGCTTGCTTCGCACATGTTGCGACA AGATGCTGCTGCGAATCATTCCCTTTGCCGTGCTGTGGCCCTGAGCGTTC TACCCGAAGATACGTTTCTGCACACAGATGACCTTAAACAAAACTTTGCA CGATTTATGTTGTGGATGCGTTCCACATTTCAAATGTCTGTCCTCGTCAC TCAACAAGGAGACCTGCGATCACAATGTGTGTTTACAAGAGCATGCAATG CGTCGGAACGAGTCATTTCGTGTGCACAGAAGGCCCAGGGAGAGTTGATA GATATTGCATCTCTTGCATGTGCTCTTGTCAGAGCACAAAACCTTCGATG TAGGCTTGTGTTGGCGTTGCAACCTGTGGAATTTCGTGTTAAGCAAAGTA AGAAGGAGCAACCATATAGTGCTAGACATCAAGTCGTTGATGCCCGAGCA AGCGATATTACAGAATCTGTTTTGTACGCATGGATTGAGGTTTGGTCACC TGAAGATTCGGCGTGGATTGTTGGTGACGTTTTCAGCGGGCAGGTTAATC AGGGATATTCTCGAAACGTTATAGATGTTGGGCTCCTTTCTGCACCTATT TTCGACAGCAAACTCATGGGTGCAGACGCTATCGAGAAGAACACTCCCAG GCGCAGAACCCGTCGACAACAGAGCACTCGTCGCAAAAAGCAGCAGCAAT CCAACGACCCCATTCGTCGGGTCAAGGAGCAGTACTACTCTCATGTTGTT GCGGTTGAAAATGGCCGTCTCACAGATGTTTCCCGACGCTACGTGCGCAA CTGGTTGCAGGCTGAAGATTGTAGAGCGAAAGGGAAAGTGTTCGAAAACG TTTTGAAGAACTTGAGTATTTCTTCTGACGTTGAAGGCGACAAAGCTTTG CAAAGTGAACTAGAGGAGTTTGAATCGATTTCTGCGGAAGAGAAGATCCC CACGACTATGACAGCAGTACAAAAGCACCCAAGATATATTCTGGAGAGAC ATGTAAAAAGGTATGAGCTTATATGGCCCAGGGAACCTATTGTTGGCTAC ATCAAAGAGGAACCCATTTTCTTGAGAGCAAATGTTAAACTGTTGCATAC AAAGGATCGCTGGATCAGAGAGATGAGAGAGGTGAAGCAAAACTCCAAGG CAATGAAGTCAGTCAAGTCAAAGAATGGCACCGATACGCAGGTGCATTTG TTTGGGGACTGGCAGACAAAACCTCTGGAAATAGCTCCGTGCAAGGACGG AAAGGTGCCTCGCGGTGTTCGCGGAAACGTTGATCTATGGACACCTGATC ACTTGCCAGACGGGGCGGAACATGTTAATGTACCGTACGCAAAAGTGGCG GCAAGAAAAGTGGAAGTTGACTTTGCACCGGCGATGACTGGGTTTGATAT TAGAGGTGGGAGATCAATTCCACGCATAGAGGGGGTGGTTGTGGCTGCAG AAAACGCTGATGTGGTTCGAGATGCCGCGCGAGAAATTGGGAGAGTTGCA CATGAGAGAGCTGAAAAGCGTGCGAAAGAAGAGGCTTTGGCAAAGTGGGC AAAATTACTGCGAGCTGTGAAGATGGGCCAGAAAGTGAGGAAGAAGTACG GTGGAGTGAGCAGTAGTACTTTTGAAGCAGATCAAAAGAGGGAAGGTTTG AAAAAGGCTGCGAGAGAAAAGGGAGGGTCGAGTAGACTGCAGGCGATGAA CAAACGTTGCGAGGACGGTGATGAGGCTGCGGCTGAAAAACTAAAGGTAG GAAAGGAGCACGAACACGTTTTTGATGAAGGGGTGCACGTTGAAGGGGAT ACGTGGTCAAAGAAGTGTAGCGTTTGTGAACTTGAGGTTTGTTTTGAAAG ATTATAG back to top
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