Ggra4622.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4622.t1
Unique NameGgra4622.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:159841..160805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ37824
PFAMsGlyoxalase
Max annot lvl35493|Streptophyta
KEGG rclassRC00004,RC00740
KEGG koko:K01759
KEGG ReactionR02530
KEGG Pathwayko00620,map00620
GOsGO:0003674,GO:0003824,GO:0004462,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006089,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009409,GO:0009438,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009987,GO:0010319,GO:0016829,GO:0016846,GO:0019243,GO:0019752,GO:0031967,GO:0031975,GO:0031977,GO:0032787,GO:0042180,GO:0042182,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0050896,GO:0051596,GO:0061727,GO:0071704,GO:1901575,GO:1901615
Evalue3.59e-120
EggNOG OGsCOG0346@1|root,KOG2943@2759|Eukaryota,37MYF@33090|Viridiplantae,3GF0Z@35493|Streptophyta
EC4.4.1.5
DescriptionCatalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4622Ggra4622Gracilaria gracilis GNS1m malegenetig00000941_pilon 159841..160805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4622.t1Ggra4622.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 159841..160805 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4622.t1.stop1Ggra4622.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 159841..159843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4622.t1.CDS1Ggra4622.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 159841..160192 -
Ggra4622.t1.CDS2Ggra4622.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000941_pilon 160278..160404 -
Ggra4622.t1.CDS3Ggra4622.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000941_pilon 160481..160805 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4622.t1.exon1Ggra4622.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 159841..160192 -
Ggra4622.t1.exon2Ggra4622.t1.exon2Gracilaria gracilis GNS1m maleexontig00000941_pilon 160278..160404 -
Ggra4622.t1.exon3Ggra4622.t1.exon3Gracilaria gracilis GNS1m maleexontig00000941_pilon 160481..160805 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4622.t1.intron1Ggra4622.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000941_pilon 160193..160277 -
Ggra4622.t1.intron2Ggra4622.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000941_pilon 160405..160480 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4622.t1.start1Ggra4622.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 160803..160805 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4622.t1 ID=Ggra4622.t1|Name=Ggra4622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MAADKMLHAVYRVGDMDASRRFLEALGMKCLRERDVPSEKYTNVFYGYGS
ERKGEHFSLELTYNYGVDSYDIGTGFGHFGVAVEDAAATVEKVRESGFKV
TREVGPVKGGSSIIAFVEDPTGYKFEVIQRKQRDPLCQVMLRVNNLDKTI
SFYEAMGMKLLRKRDNPEYNYTLGFMGFGPEEESTVLELTYNYGDNKYTP
GTGYAQIAVSTPDVYEAAEQIKKKGFTLAREPGPVPGIGTKICAVRDPDG
WKTVLVDAEDFEKEFDE*
back to top

spliced messenger RNA

>Ggra4622.t1 ID=Ggra4622.t1|Name=Ggra4622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000941_pilon:159841..160805- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGGACAAGATGTTGCATGCTGTTTATCGTGTAGGCGATATGGA
CGCTTCACGAAGATTCCTGGAGGCCCTTGGAATGAAATGTCTGCGAGAGC
GCGATGTGCCTAGTGAAAAGTATACCAATGTGTTCTATGGCTACGGATCT
GAAAGGAAGGGGGAGCACTTCAGTCTAGAACTCACATACAATTACGGAGT
TGATTCTTATGATATTGGCACTGGTTTTGGGCACTTTGGCGTTGCCGTCG
AGGACGCTGCTGCGACTGTTGAAAAAGTGAGGGAGTCGGGTTTCAAGGTC
ACTCGTGAAGTGGGACCCGTGAAGGGAGGGTCAAGTATAATCGCGTTCGT
GGAAGACCCCACCGGATACAAGTTCGAAGTCATACAACGCAAACAACGAG
ACCCTCTATGTCAAGTCATGCTTCGAGTCAATAATCTGGACAAAACTATC
TCTTTCTACGAAGCTATGGGGATGAAGCTTCTCCGCAAACGCGACAATCC
AGAATACAATTACACCCTAGGTTTTATGGGTTTTGGCCCTGAAGAAGAGA
GCACGGTGCTGGAATTGACTTACAACTACGGAGACAATAAGTACACACCC
GGTACTGGATATGCGCAAATTGCGGTTAGTACACCTGATGTGTACGAAGC
AGCGGAACAAATTAAGAAAAAAGGTTTCACGTTGGCTCGCGAACCAGGGC
CCGTTCCTGGGATCGGAACAAAAATATGTGCAGTGAGGGATCCGGACGGA
TGGAAGACGGTTCTGGTTGATGCTGAGGATTTCGAGAAAGAGTTTGACGA
ATAG
back to top

protein sequence of Ggra4622.t1

>Ggra4622.t1 ID=Ggra4622.t1|Name=Ggra4622.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MAADKMLHAVYRVGDMDASRRFLEALGMKCLRERDVPSEKYTNVFYGYGS
ERKGEHFSLELTYNYGVDSYDIGTGFGHFGVAVEDAAATVEKVRESGFKV
TREVGPVKGGSSIIAFVEDPTGYKFEVIQRKQRDPLCQVMLRVNNLDKTI
SFYEAMGMKLLRKRDNPEYNYTLGFMGFGPEEESTVLELTYNYGDNKYTP
GTGYAQIAVSTPDVYEAAEQIKKKGFTLAREPGPVPGIGTKICAVRDPDG
WKTVLVDAEDFEKEFDE*
back to top

mRNA from alignment at tig00000941_pilon:159841..160805-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4622.t1 ID=Ggra4622.t1|Name=Ggra4622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=965bp|location=Sequence derived from alignment at tig00000941_pilon:159841..160805- (Gracilaria gracilis GNS1m male)
ATGGCGGCGGACAAGATGTTGCATGCTGTTTATCGTGTAGGCGATATGGA
CGCTTCACGAAGATTCCTGGAGGCCCTTGGAATGAAATGTCTGCGAGAGC
GCGATGTGCCTAGTGAAAAGTATACCAATGTGTTCTATGGCTACGGATCT
GAAAGGAAGGGGGAGCACTTCAGTCTAGAACTCACATACAATTACGGAGT
TGATTCTTATGATATTGGCACTGGTTTTGGGCACTTTGGCGTTGCCGTCG
AGGACGCTGCTGCGACTGTTGAAAAAGTGAGGGAGTCGGGTTTCAAGGTC
ACTCGTGAAGTGGGACCCGTGAAGGGTAAGTGAAAATTTCTTAATCTCAG
AAGTGGACCTGGTTCTGACCAGTTTCCCAATATCCCACTTCCTAACAACA
GGAGGGTCAAGTATAATCGCGTTCGTGGAAGACCCCACCGGATACAAGTT
CGAAGTCATACAACGCAAACAACGAGACCCTCTATGTCAAGTCATGCTTC
GAGTCAATAATCTGGACAAAACTATCTCGTAAGTACTGGTCGCCGTCAAT
GATAAGGCTGTGTTCAAGTTTCCTGACAGTGCATGTGATATACTGTGTTT
TAATGGGTAACAGTTTCTACGAAGCTATGGGGATGAAGCTTCTCCGCAAA
CGCGACAATCCAGAATACAATTACACCCTAGGTTTTATGGGTTTTGGCCC
TGAAGAAGAGAGCACGGTGCTGGAATTGACTTACAACTACGGAGACAATA
AGTACACACCCGGTACTGGATATGCGCAAATTGCGGTTAGTACACCTGAT
GTGTACGAAGCAGCGGAACAAATTAAGAAAAAAGGTTTCACGTTGGCTCG
CGAACCAGGGCCCGTTCCTGGGATCGGAACAAAAATATGTGCAGTGAGGG
ATCCGGACGGATGGAAGACGGTTCTGGTTGATGCTGAGGATTTCGAGAAA
GAGTTTGACGAATAG
back to top

Coding sequence (CDS) from alignment at tig00000941_pilon:159841..160805-

>Ggra4622.t1 ID=Ggra4622.t1|Name=Ggra4622.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000941_pilon:159841..160805- (Gracilaria gracilis GNS1m male)
ATGGCGGCGGACAAGATGTTGCATGCTGTTTATCGTGTAGGCGATATGGA
CGCTTCACGAAGATTCCTGGAGGCCCTTGGAATGAAATGTCTGCGAGAGC
GCGATGTGCCTAGTGAAAAGTATACCAATGTGTTCTATGGCTACGGATCT
GAAAGGAAGGGGGAGCACTTCAGTCTAGAACTCACATACAATTACGGAGT
TGATTCTTATGATATTGGCACTGGTTTTGGGCACTTTGGCGTTGCCGTCG
AGGACGCTGCTGCGACTGTTGAAAAAGTGAGGGAGTCGGGTTTCAAGGTC
ACTCGTGAAGTGGGACCCGTGAAGGGAGGGTCAAGTATAATCGCGTTCGT
GGAAGACCCCACCGGATACAAGTTCGAAGTCATACAACGCAAACAACGAG
ACCCTCTATGTCAAGTCATGCTTCGAGTCAATAATCTGGACAAAACTATC
TCTTTCTACGAAGCTATGGGGATGAAGCTTCTCCGCAAACGCGACAATCC
AGAATACAATTACACCCTAGGTTTTATGGGTTTTGGCCCTGAAGAAGAGA
GCACGGTGCTGGAATTGACTTACAACTACGGAGACAATAAGTACACACCC
GGTACTGGATATGCGCAAATTGCGGTTAGTACACCTGATGTGTACGAAGC
AGCGGAACAAATTAAGAAAAAAGGTTTCACGTTGGCTCGCGAACCAGGGC
CCGTTCCTGGGATCGGAACAAAAATATGTGCAGTGAGGGATCCGGACGGA
TGGAAGACGGTTCTGGTTGATGCTGAGGATTTCGAGAAAGAGTTTGACGA
ATAG
back to top