Ggra462.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra462.t1
Unique NameGgra462.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000242_piloncontigtig00000242_pilon:66418..67168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra462Ggra462Gracilaria gracilis GNS1m malegenetig00000242_pilon 66418..67168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra462.t1Ggra462.t1Gracilaria gracilis GNS1m malepolypeptidetig00000242_pilon 66418..67168 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra462.t1.start1Ggra462.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000242_pilon 66418..66420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra462.t1.CDS1Ggra462.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000242_pilon 66418..66808 +
Ggra462.t1.CDS2Ggra462.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000242_pilon 66930..67168 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra462.t1.exon1Ggra462.t1.exon1Gracilaria gracilis GNS1m maleexontig00000242_pilon 66418..66808 +
Ggra462.t1.exon2Ggra462.t1.exon2Gracilaria gracilis GNS1m maleexontig00000242_pilon 66930..67168 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra462.t1.intron1Ggra462.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000242_pilon 66809..66929 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra462.t1.stop1Ggra462.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000242_pilon 67166..67168 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra462.t1 ID=Ggra462.t1|Name=Ggra462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp
MKLLSFLFLSFILPQLFAGHSVPSSFRNHACFSVPTNLRVSEERIPGDPS
RRVRTPSNDSPPQPQSTPTNPPYKIVTCIGTRCIANDQSLMYCPTALQVI
PYSRGTAVLFIAVKETGTNDLTVTFGAQVPRGVDLQRQDNQNLLEGRSVL
VVARAVVSGPRQSVPTLLPFPVVAHVAERVADEDVRKMAFRSDFVKGFIR
NVVWMFRGS*
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spliced messenger RNA

>Ggra462.t1 ID=Ggra462.t1|Name=Ggra462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000242_pilon:66418..67168+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCCTTAGTTTCTTGTTCTTATCGTTCATCCTTCCCCAACTTTT
TGCAGGTCATTCTGTTCCATCATCATTCCGAAATCACGCTTGCTTTTCAG
TTCCCACCAATCTTCGAGTTTCAGAAGAACGCATACCAGGCGATCCATCG
AGACGTGTCAGAACCCCCAGCAATGATTCCCCTCCTCAACCCCAGAGCAC
CCCAACCAATCCCCCATATAAGATTGTCACATGTATTGGAACCAGGTGCA
TCGCTAACGATCAATCCCTCATGTATTGTCCAACAGCACTACAGGTAATT
CCATACTCTCGCGGAACCGCCGTGTTATTCATTGCCGTGAAGGAGACAGG
TACAAATGACCTTACGGTAACATTCGGTGCGCAGGTACCACGCGGAGTAG
ATCTTCAAAGACAGGACAACCAAAACTTGTTGGAAGGCCGTTCGGTTCTT
GTTGTGGCCCGTGCGGTCGTTTCAGGACCTCGACAGTCCGTGCCTACCCT
CCTGCCTTTTCCTGTTGTCGCGCATGTCGCAGAACGCGTGGCTGATGAAG
ATGTTCGAAAGATGGCGTTTCGATCAGACTTCGTGAAGGGCTTCATACGT
AATGTTGTTTGGATGTTTCGTGGCTCATGA
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protein sequence of Ggra462.t1

>Ggra462.t1 ID=Ggra462.t1|Name=Ggra462.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MKLLSFLFLSFILPQLFAGHSVPSSFRNHACFSVPTNLRVSEERIPGDPS
RRVRTPSNDSPPQPQSTPTNPPYKIVTCIGTRCIANDQSLMYCPTALQVI
PYSRGTAVLFIAVKETGTNDLTVTFGAQVPRGVDLQRQDNQNLLEGRSVL
VVARAVVSGPRQSVPTLLPFPVVAHVAERVADEDVRKMAFRSDFVKGFIR
NVVWMFRGS*
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mRNA from alignment at tig00000242_pilon:66418..67168+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra462.t1 ID=Ggra462.t1|Name=Ggra462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=751bp|location=Sequence derived from alignment at tig00000242_pilon:66418..67168+ (Gracilaria gracilis GNS1m male)
ATGAAGCTCCTTAGTTTCTTGTTCTTATCGTTCATCCTTCCCCAACTTTT
TGCAGGTCATTCTGTTCCATCATCATTCCGAAATCACGCTTGCTTTTCAG
TTCCCACCAATCTTCGAGTTTCAGAAGAACGCATACCAGGCGATCCATCG
AGACGTGTCAGAACCCCCAGCAATGATTCCCCTCCTCAACCCCAGAGCAC
CCCAACCAATCCCCCATATAAGATTGTCACATGTATTGGAACCAGGTGCA
TCGCTAACGATCAATCCCTCATGTATTGTCCAACAGCACTACAGGTAATT
CCATACTCTCGCGGAACCGCCGTGTTATTCATTGCCGTGAAGGAGACAGG
TACAAATGACCTTACGGTAACATTCGGTGCGCAGGTACCACGTGAGTCAG
TGAGAACGAGATTCGTTGCATCTATTCCATGGATCCCGCTCGGAAACTCT
TCAACGCCCGCTTTTTGTTCCAGCCCCCAAGGCTCCTTTGGTGGTATCCT
GAACCCTCGTAGGCGGAGTAGATCTTCAAAGACAGGACAACCAAAACTTG
TTGGAAGGCCGTTCGGTTCTTGTTGTGGCCCGTGCGGTCGTTTCAGGACC
TCGACAGTCCGTGCCTACCCTCCTGCCTTTTCCTGTTGTCGCGCATGTCG
CAGAACGCGTGGCTGATGAAGATGTTCGAAAGATGGCGTTTCGATCAGAC
TTCGTGAAGGGCTTCATACGTAATGTTGTTTGGATGTTTCGTGGCTCATG
A
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Coding sequence (CDS) from alignment at tig00000242_pilon:66418..67168+

>Ggra462.t1 ID=Ggra462.t1|Name=Ggra462.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00000242_pilon:66418..67168+ (Gracilaria gracilis GNS1m male)
ATGAAGCTCCTTAGTTTCTTGTTCTTATCGTTCATCCTTCCCCAACTTTT
TGCAGGTCATTCTGTTCCATCATCATTCCGAAATCACGCTTGCTTTTCAG
TTCCCACCAATCTTCGAGTTTCAGAAGAACGCATACCAGGCGATCCATCG
AGACGTGTCAGAACCCCCAGCAATGATTCCCCTCCTCAACCCCAGAGCAC
CCCAACCAATCCCCCATATAAGATTGTCACATGTATTGGAACCAGGTGCA
TCGCTAACGATCAATCCCTCATGTATTGTCCAACAGCACTACAGGTAATT
CCATACTCTCGCGGAACCGCCGTGTTATTCATTGCCGTGAAGGAGACAGG
TACAAATGACCTTACGGTAACATTCGGTGCGCAGGTACCACGCGGAGTAG
ATCTTCAAAGACAGGACAACCAAAACTTGTTGGAAGGCCGTTCGGTTCTT
GTTGTGGCCCGTGCGGTCGTTTCAGGACCTCGACAGTCCGTGCCTACCCT
CCTGCCTTTTCCTGTTGTCGCGCATGTCGCAGAACGCGTGGCTGATGAAG
ATGTTCGAAAGATGGCGTTTCGATCAGACTTCGTGAAGGGCTTCATACGT
AATGTTGTTTGGATGTTTCGTGGCTCATGA
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