Ggra4615.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4615.t1
Unique Name	Ggra4615.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	554

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000941_pilon	contig	tig00000941_pilon:140870..142531 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4615	Ggra4615	Gracilaria gracilis GNS1m male	gene	tig00000941_pilon 140870..142531 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4615.t1.start1	Ggra4615.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000941_pilon 140870..140872 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4615.t1.CDS1	Ggra4615.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000941_pilon 140870..142531 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4615.t1.exon1	Ggra4615.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000941_pilon 140870..142531 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4615.t1.stop1	Ggra4615.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000941_pilon 142529..142531 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4615.t1	Ggra4615.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000941_pilon 140870..142531 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000941_pilon:140870..142531+
coding sequence from alignment at tig00000941_pilon:140870..142531+

mRNA sequence

>Ggra4615.t1 ID=Ggra4615.t1|Name=Ggra4615.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=554bp
MTFWKTPFKFLFSFIWKESLENWENPPKSGSPDDEQTYSRNPLWKAEVEV
FVLNLWEKLLICEGIGDPDDLAHLFRPQNCIAEEDMNAVKVAQEVLKQKG
TAAIQKIRDFRKARDRDVQNLIGEQKKTIDSLTKQLRVLSRKVGDAEEAV
DLIMTEKQDLKYTYGMYAKQNGMLKNLLGEKRVENETLELKFTALTKLSE
RWELRAGKMQEAKTMAQVRALRAERKAELAEVRAKHASSEKKMMDMRLKE
AESSSKTISQHVEDLRQKQAEFFRTLAHNSGALGVRFGGNKINNFMRKSS
KVLCRLWTFLGRGNHDDIPAEHEQAEEYGGADAMDTVTQGPCTSAIGDRF
KKVRGSLEVNGSRDVLVEDEAKAVAQRWTSSKAWKLQDLDENPGHQAIGA
SGGQQTVNPDSKKGERVRETGDGESCSSGDSGDRIAQTVRTTGFIRILSM
SSFSGQSNNPSSELVRTQELVSKTLEALKQNFEALREIIEVKQSEIERLQ
GELYVASNQSNAFERCLSKERHKLRELKFNRPSQQADDTPVRETSAFWSD
RPR*

spliced messenger RNA

>Ggra4615.t1 ID=Ggra4615.t1|Name=Ggra4615.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000941_pilon:140870..142531+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTTTGGAAAACACCGTTTAAGTTCTTGTTCTCCTTCATTTGGAA
AGAATCGTTGGAGAACTGGGAGAATCCCCCAAAGTCGGGATCACCGGACG
ATGAACAAACCTATTCACGCAACCCTCTTTGGAAAGCCGAAGTGGAAGTA
TTCGTGTTGAACTTGTGGGAAAAGCTGCTTATTTGCGAGGGAATCGGCGA
TCCTGATGACTTAGCACACCTTTTTAGGCCGCAAAATTGTATTGCAGAAG
AAGATATGAACGCAGTAAAAGTGGCTCAAGAAGTCCTGAAACAAAAGGGG
ACCGCTGCTATCCAGAAGATTCGAGATTTCCGCAAGGCGCGAGATAGAGA
TGTCCAAAACCTCATTGGCGAGCAAAAGAAAACTATTGATTCACTTACGA
AACAGCTCCGAGTTCTGTCGAGGAAGGTTGGCGACGCAGAGGAGGCTGTA
GACCTTATCATGACGGAAAAACAAGATCTGAAATACACATACGGAATGTA
TGCGAAGCAGAACGGAATGCTGAAGAACCTCTTGGGCGAAAAGAGGGTGG
AGAATGAGACCTTAGAACTAAAATTCACCGCTTTGACCAAGCTATCAGAG
CGATGGGAACTTAGGGCAGGAAAGATGCAGGAAGCCAAAACGATGGCGCA
AGTGCGAGCTCTACGTGCAGAACGCAAAGCTGAGCTAGCCGAAGTTAGGG
CAAAACATGCTTCCTCCGAGAAAAAAATGATGGATATGCGCCTAAAGGAG
GCTGAGTCCTCGTCCAAGACCATTTCACAGCACGTTGAAGATTTGAGACA
AAAGCAAGCGGAATTCTTCAGAACTCTTGCTCACAATTCGGGGGCGTTGG
GTGTGCGATTTGGTGGAAACAAAATAAACAACTTCATGCGGAAGAGCTCA
AAGGTGTTGTGTCGTCTGTGGACGTTCCTAGGTCGTGGAAACCATGACGA
TATCCCAGCCGAACATGAACAAGCTGAGGAGTATGGTGGAGCTGATGCAA
TGGACACCGTCACTCAAGGGCCTTGTACATCTGCAATTGGTGACCGATTC
AAAAAAGTTCGAGGCTCCCTTGAAGTCAATGGCAGCCGTGATGTCCTAGT
TGAGGACGAAGCGAAAGCCGTAGCCCAGAGATGGACGTCGAGTAAAGCAT
GGAAACTTCAGGACCTTGACGAGAATCCAGGGCATCAAGCAATCGGTGCG
AGTGGAGGACAACAAACTGTAAACCCCGATTCCAAGAAGGGAGAAAGAGT
ACGTGAAACGGGTGATGGTGAAAGTTGTAGCAGTGGGGATTCCGGTGATA
GAATCGCCCAAACTGTGAGAACTACGGGCTTTATACGCATCCTCTCAATG
AGTTCTTTCTCTGGACAGTCCAACAATCCATCTTCTGAATTAGTCCGTAC
ACAGGAGCTTGTGTCCAAGACTTTAGAGGCTCTCAAGCAGAACTTTGAGG
CGCTTCGAGAAATCATCGAAGTGAAGCAAAGCGAGATTGAGAGGTTGCAG
GGAGAGCTCTACGTAGCGTCAAACCAATCAAATGCATTTGAACGATGTTT
GAGCAAGGAAAGACACAAACTACGAGAACTGAAGTTCAACAGGCCTTCAC
AGCAGGCAGATGATACTCCGGTGAGAGAAACCTCAGCGTTCTGGAGCGAC
CGCCCTCGTTAG

protein sequence of Ggra4615.t1

>Ggra4615.t1 ID=Ggra4615.t1|Name=Ggra4615.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=554bp
MTFWKTPFKFLFSFIWKESLENWENPPKSGSPDDEQTYSRNPLWKAEVEV
FVLNLWEKLLICEGIGDPDDLAHLFRPQNCIAEEDMNAVKVAQEVLKQKG
TAAIQKIRDFRKARDRDVQNLIGEQKKTIDSLTKQLRVLSRKVGDAEEAV
DLIMTEKQDLKYTYGMYAKQNGMLKNLLGEKRVENETLELKFTALTKLSE
RWELRAGKMQEAKTMAQVRALRAERKAELAEVRAKHASSEKKMMDMRLKE
AESSSKTISQHVEDLRQKQAEFFRTLAHNSGALGVRFGGNKINNFMRKSS
KVLCRLWTFLGRGNHDDIPAEHEQAEEYGGADAMDTVTQGPCTSAIGDRF
KKVRGSLEVNGSRDVLVEDEAKAVAQRWTSSKAWKLQDLDENPGHQAIGA
SGGQQTVNPDSKKGERVRETGDGESCSSGDSGDRIAQTVRTTGFIRILSM
SSFSGQSNNPSSELVRTQELVSKTLEALKQNFEALREIIEVKQSEIERLQ
GELYVASNQSNAFERCLSKERHKLRELKFNRPSQQADDTPVRETSAFWSD
RPR*

mRNA from alignment at tig00000941_pilon:140870..142531+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4615.t1 ID=Ggra4615.t1|Name=Ggra4615.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000941_pilon:140870..142531+ (Gracilaria gracilis GNS1m male)
ATGACATTTTGGAAAACACCGTTTAAGTTCTTGTTCTCCTTCATTTGGAA
AGAATCGTTGGAGAACTGGGAGAATCCCCCAAAGTCGGGATCACCGGACG
ATGAACAAACCTATTCACGCAACCCTCTTTGGAAAGCCGAAGTGGAAGTA
TTCGTGTTGAACTTGTGGGAAAAGCTGCTTATTTGCGAGGGAATCGGCGA
TCCTGATGACTTAGCACACCTTTTTAGGCCGCAAAATTGTATTGCAGAAG
AAGATATGAACGCAGTAAAAGTGGCTCAAGAAGTCCTGAAACAAAAGGGG
ACCGCTGCTATCCAGAAGATTCGAGATTTCCGCAAGGCGCGAGATAGAGA
TGTCCAAAACCTCATTGGCGAGCAAAAGAAAACTATTGATTCACTTACGA
AACAGCTCCGAGTTCTGTCGAGGAAGGTTGGCGACGCAGAGGAGGCTGTA
GACCTTATCATGACGGAAAAACAAGATCTGAAATACACATACGGAATGTA
TGCGAAGCAGAACGGAATGCTGAAGAACCTCTTGGGCGAAAAGAGGGTGG
AGAATGAGACCTTAGAACTAAAATTCACCGCTTTGACCAAGCTATCAGAG
CGATGGGAACTTAGGGCAGGAAAGATGCAGGAAGCCAAAACGATGGCGCA
AGTGCGAGCTCTACGTGCAGAACGCAAAGCTGAGCTAGCCGAAGTTAGGG
CAAAACATGCTTCCTCCGAGAAAAAAATGATGGATATGCGCCTAAAGGAG
GCTGAGTCCTCGTCCAAGACCATTTCACAGCACGTTGAAGATTTGAGACA
AAAGCAAGCGGAATTCTTCAGAACTCTTGCTCACAATTCGGGGGCGTTGG
GTGTGCGATTTGGTGGAAACAAAATAAACAACTTCATGCGGAAGAGCTCA
AAGGTGTTGTGTCGTCTGTGGACGTTCCTAGGTCGTGGAAACCATGACGA
TATCCCAGCCGAACATGAACAAGCTGAGGAGTATGGTGGAGCTGATGCAA
TGGACACCGTCACTCAAGGGCCTTGTACATCTGCAATTGGTGACCGATTC
AAAAAAGTTCGAGGCTCCCTTGAAGTCAATGGCAGCCGTGATGTCCTAGT
TGAGGACGAAGCGAAAGCCGTAGCCCAGAGATGGACGTCGAGTAAAGCAT
GGAAACTTCAGGACCTTGACGAGAATCCAGGGCATCAAGCAATCGGTGCG
AGTGGAGGACAACAAACTGTAAACCCCGATTCCAAGAAGGGAGAAAGAGT
ACGTGAAACGGGTGATGGTGAAAGTTGTAGCAGTGGGGATTCCGGTGATA
GAATCGCCCAAACTGTGAGAACTACGGGCTTTATACGCATCCTCTCAATG
AGTTCTTTCTCTGGACAGTCCAACAATCCATCTTCTGAATTAGTCCGTAC
ACAGGAGCTTGTGTCCAAGACTTTAGAGGCTCTCAAGCAGAACTTTGAGG
CGCTTCGAGAAATCATCGAAGTGAAGCAAAGCGAGATTGAGAGGTTGCAG
GGAGAGCTCTACGTAGCGTCAAACCAATCAAATGCATTTGAACGATGTTT
GAGCAAGGAAAGACACAAACTACGAGAACTGAAGTTCAACAGGCCTTCAC
AGCAGGCAGATGATACTCCGGTGAGAGAAACCTCAGCGTTCTGGAGCGAC
CGCCCTCGTTAG

Coding sequence (CDS) from alignment at tig00000941_pilon:140870..142531+

>Ggra4615.t1 ID=Ggra4615.t1|Name=Ggra4615.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1662bp|location=Sequence derived from alignment at tig00000941_pilon:140870..142531+ (Gracilaria gracilis GNS1m male)
ATGACATTTTGGAAAACACCGTTTAAGTTCTTGTTCTCCTTCATTTGGAA
AGAATCGTTGGAGAACTGGGAGAATCCCCCAAAGTCGGGATCACCGGACG
ATGAACAAACCTATTCACGCAACCCTCTTTGGAAAGCCGAAGTGGAAGTA
TTCGTGTTGAACTTGTGGGAAAAGCTGCTTATTTGCGAGGGAATCGGCGA
TCCTGATGACTTAGCACACCTTTTTAGGCCGCAAAATTGTATTGCAGAAG
AAGATATGAACGCAGTAAAAGTGGCTCAAGAAGTCCTGAAACAAAAGGGG
ACCGCTGCTATCCAGAAGATTCGAGATTTCCGCAAGGCGCGAGATAGAGA
TGTCCAAAACCTCATTGGCGAGCAAAAGAAAACTATTGATTCACTTACGA
AACAGCTCCGAGTTCTGTCGAGGAAGGTTGGCGACGCAGAGGAGGCTGTA
GACCTTATCATGACGGAAAAACAAGATCTGAAATACACATACGGAATGTA
TGCGAAGCAGAACGGAATGCTGAAGAACCTCTTGGGCGAAAAGAGGGTGG
AGAATGAGACCTTAGAACTAAAATTCACCGCTTTGACCAAGCTATCAGAG
CGATGGGAACTTAGGGCAGGAAAGATGCAGGAAGCCAAAACGATGGCGCA
AGTGCGAGCTCTACGTGCAGAACGCAAAGCTGAGCTAGCCGAAGTTAGGG
CAAAACATGCTTCCTCCGAGAAAAAAATGATGGATATGCGCCTAAAGGAG
GCTGAGTCCTCGTCCAAGACCATTTCACAGCACGTTGAAGATTTGAGACA
AAAGCAAGCGGAATTCTTCAGAACTCTTGCTCACAATTCGGGGGCGTTGG
GTGTGCGATTTGGTGGAAACAAAATAAACAACTTCATGCGGAAGAGCTCA
AAGGTGTTGTGTCGTCTGTGGACGTTCCTAGGTCGTGGAAACCATGACGA
TATCCCAGCCGAACATGAACAAGCTGAGGAGTATGGTGGAGCTGATGCAA
TGGACACCGTCACTCAAGGGCCTTGTACATCTGCAATTGGTGACCGATTC
AAAAAAGTTCGAGGCTCCCTTGAAGTCAATGGCAGCCGTGATGTCCTAGT
TGAGGACGAAGCGAAAGCCGTAGCCCAGAGATGGACGTCGAGTAAAGCAT
GGAAACTTCAGGACCTTGACGAGAATCCAGGGCATCAAGCAATCGGTGCG
AGTGGAGGACAACAAACTGTAAACCCCGATTCCAAGAAGGGAGAAAGAGT
ACGTGAAACGGGTGATGGTGAAAGTTGTAGCAGTGGGGATTCCGGTGATA
GAATCGCCCAAACTGTGAGAACTACGGGCTTTATACGCATCCTCTCAATG
AGTTCTTTCTCTGGACAGTCCAACAATCCATCTTCTGAATTAGTCCGTAC
ACAGGAGCTTGTGTCCAAGACTTTAGAGGCTCTCAAGCAGAACTTTGAGG
CGCTTCGAGAAATCATCGAAGTGAAGCAAAGCGAGATTGAGAGGTTGCAG
GGAGAGCTCTACGTAGCGTCAAACCAATCAAATGCATTTGAACGATGTTT
GAGCAAGGAAAGACACAAACTACGAGAACTGAAGTTCAACAGGCCTTCAC
AGCAGGCAGATGATACTCCGGTGAGAGAAACCTCAGCGTTCTGGAGCGAC
CGCCCTCGTTAG