Ggra461.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra461.t1
Unique NameGgra461.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length92
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000242_piloncontigtig00000242_pilon:58719..58994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra461Ggra461Gracilaria gracilis GNS1m malegenetig00000242_pilon 58719..58994 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra461.t1.stop1Ggra461.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000242_pilon 58719..58721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra461.t1.CDS1Ggra461.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000242_pilon 58719..58994 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra461.t1.exon1Ggra461.t1.exon1Gracilaria gracilis GNS1m maleexontig00000242_pilon 58719..58994 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra461.t1.start1Ggra461.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000242_pilon 58992..58994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra461.t1Ggra461.t1Gracilaria gracilis GNS1m malepolypeptidetig00000242_pilon 58719..58994 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra461.t1 ID=Ggra461.t1|Name=Ggra461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=92bp
MSNKGTLTAAHYEDVNPHSKSPHPIPRVQQYEARERKVNNLQQDGEVSGL
QGEETRIDTEEQCSEQDRMQPPTTAANIVISPSKLVRKIPR*
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spliced messenger RNA

>Ggra461.t1 ID=Ggra461.t1|Name=Ggra461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp|location=Sequence derived from alignment at tig00000242_pilon:58719..58994- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAATAAGGGCACTCTGACTGCGGCTCATTATGAGGACGTCAACCC
GCACTCCAAATCTCCGCATCCCATTCCCCGTGTTCAGCAGTATGAAGCCC
GTGAGAGAAAGGTCAACAATCTTCAACAAGACGGCGAGGTGTCAGGACTG
CAAGGAGAAGAGACGAGAATTGACACCGAAGAACAATGCTCAGAACAGGA
TCGGATGCAACCACCAACAACTGCGGCTAATATTGTGATATCCCCTTCGA
AACTTGTCCGCAAGATCCCCCGTTAA
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protein sequence of Ggra461.t1

>Ggra461.t1 ID=Ggra461.t1|Name=Ggra461.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=92bp
MSNKGTLTAAHYEDVNPHSKSPHPIPRVQQYEARERKVNNLQQDGEVSGL
QGEETRIDTEEQCSEQDRMQPPTTAANIVISPSKLVRKIPR*
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mRNA from alignment at tig00000242_pilon:58719..58994-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra461.t1 ID=Ggra461.t1|Name=Ggra461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp|location=Sequence derived from alignment at tig00000242_pilon:58719..58994- (Gracilaria gracilis GNS1m male)
ATGTCGAATAAGGGCACTCTGACTGCGGCTCATTATGAGGACGTCAACCC
GCACTCCAAATCTCCGCATCCCATTCCCCGTGTTCAGCAGTATGAAGCCC
GTGAGAGAAAGGTCAACAATCTTCAACAAGACGGCGAGGTGTCAGGACTG
CAAGGAGAAGAGACGAGAATTGACACCGAAGAACAATGCTCAGAACAGGA
TCGGATGCAACCACCAACAACTGCGGCTAATATTGTGATATCCCCTTCGA
AACTTGTCCGCAAGATCCCCCGTTAA
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Coding sequence (CDS) from alignment at tig00000242_pilon:58719..58994-

>Ggra461.t1 ID=Ggra461.t1|Name=Ggra461.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=276bp|location=Sequence derived from alignment at tig00000242_pilon:58719..58994- (Gracilaria gracilis GNS1m male)
ATGTCGAATAAGGGCACTCTGACTGCGGCTCATTATGAGGACGTCAACCC
GCACTCCAAATCTCCGCATCCCATTCCCCGTGTTCAGCAGTATGAAGCCC
GTGAGAGAAAGGTCAACAATCTTCAACAAGACGGCGAGGTGTCAGGACTG
CAAGGAGAAGAGACGAGAATTGACACCGAAGAACAATGCTCAGAACAGGA
TCGGATGCAACCACCAACAACTGCGGCTAATATTGTGATATCCCCTTCGA
AACTTGTCCGCAAGATCCCCCGTTAA
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