Ggra4605.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4605.t1
Unique NameGgra4605.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length392
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:103811..104986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4605Ggra4605Gracilaria gracilis GNS1m malegenetig00000941_pilon 103811..104986 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4605.t1.start1Ggra4605.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 103811..103813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4605.t1.CDS1Ggra4605.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 103811..104986 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4605.t1.exon1Ggra4605.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 103811..104986 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4605.t1.stop1Ggra4605.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 104984..104986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4605.t1Ggra4605.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 103811..104986 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4605.t1 ID=Ggra4605.t1|Name=Ggra4605.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=392bp
MARLSPSCSPPSCSPPSCSPPSSPRRSPSMSPSMSPRHSDTSLNSVSAPL
SCPRANAATATAADAAAAAAAAACDALVLPLPAHASTSTISRSSHASNDD
HFLHPPSFTRLPKAKVFVRREPSRIAAERSNKNKNNDNNNNNSSSNSQHR
CLPRPNKPADKRCVSDIHDVYHVKHSHSRPMPHAHAADKHQRVRTDLHAL
VDQLPDVHHVPHWIPRDERRDWTAAEHAVDPFDPCEVESDHHPSSRWATS
LRNLANMYKPKTTKPSAVRGSVLQVQPPTLGERLGLSTKGDKRRHAATKS
SQAATTCAQWSTTTTTTTSNTTTTNQSCAHAPKQQQRQQRQQQQQSEHMS
CYADDYVGFLEKPSAKVLHQRHRSSWFRFLRRGRHRAAARS*
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spliced messenger RNA

>Ggra4605.t1 ID=Ggra4605.t1|Name=Ggra4605.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000941_pilon:103811..104986+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCTTGTCGCCTTCTTGCTCGCCGCCTTCTTGCTCGCCGCCTTC
TTGCTCGCCGCCTTCGTCGCCGCGCCGCTCGCCTTCCATGTCGCCTTCAA
TGTCGCCGCGCCACTCCGACACGTCGCTCAACAGCGTGTCGGCGCCGCTT
TCGTGCCCGCGCGCCAACGCCGCTAccgccaccgccgccgacgccgccgc
cgccgccgccgccgccgcTTGTGACGCGCTTGTGCTTCCGCTGCCGGCGC
ATGCGAGCACCAGCACCATCTCGCGCTCCAGCCACGCCAGCAACGACGAC
CACTTCTTGCACCCGCCCTCCTTCACGCGCCTGCCCAAGGCGAAGGTATT
CGTGCGTCGCGAGCCCAGTCGAATCGCCGCCGAGCGcagcaacaaaaaca
aaaacaacgacaacaacaacaacaacagcagcagcaacTCGCAACACCGC
TGTCTACCACGCCCCAACAAGCCGGCCGACAAGCGCTGCGTATCGGACAT
ACACGACGTGTACCACGTCAAGCACAGCCACAGTCGGCCCATGCCTCACG
CGCACGCCGCCGACAAGCACCAGCGCGTGCGCACCGACTTGCACGCGCTG
GTCGACCAGCTGCCGGACGTGCACCACGTGCCGCACTGGATTCCGCGCGA
TGAGCGCAGGGATTGGACTGCTGCGGAGCACGCGGTGGACCCGTTCGACC
CGTGCGAAGTCGAGAGTGATCACCACCCGTCCAGCCGATGGGCCACCAGC
CTACGAAATCTTGCAAACATGTACAAACCAAAGACGACCAAACCGTCTGC
TGTTCGCGGCTCCGTGCTGCAGGTGCAGCCGCCGACGCTTGGTGAACGAC
TGGGCTTGTCAACCAAGGGCGATAAGCGTCGCCACGCCGCCACCAAGTCA
AGTCAGGctgctactacttgtgctcagtggtctactactaccactaccac
cactagcaacaccaccaccaccaaccaAAGCTGTGCGCACGCGCCCAagc
agcagcagcggcagcagcggcagcagcagcagcagAGCGAGCACATGAGC
TGCTACGCCGATGACTACGTGGGCTTCTTGGAAAAGCCGTCAGCAAAGGT
GCTGCATCAACGGCATCGATCGTCGTGGTTTCGTTTCCTGCGGCGCGGTC
GCCACCGCGCGGCAGCGCGCTCGTAG
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protein sequence of Ggra4605.t1

>Ggra4605.t1 ID=Ggra4605.t1|Name=Ggra4605.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=392bp
MARLSPSCSPPSCSPPSCSPPSSPRRSPSMSPSMSPRHSDTSLNSVSAPL
SCPRANAATATAADAAAAAAAAACDALVLPLPAHASTSTISRSSHASNDD
HFLHPPSFTRLPKAKVFVRREPSRIAAERSNKNKNNDNNNNNSSSNSQHR
CLPRPNKPADKRCVSDIHDVYHVKHSHSRPMPHAHAADKHQRVRTDLHAL
VDQLPDVHHVPHWIPRDERRDWTAAEHAVDPFDPCEVESDHHPSSRWATS
LRNLANMYKPKTTKPSAVRGSVLQVQPPTLGERLGLSTKGDKRRHAATKS
SQAATTCAQWSTTTTTTTSNTTTTNQSCAHAPKQQQRQQRQQQQQSEHMS
CYADDYVGFLEKPSAKVLHQRHRSSWFRFLRRGRHRAAARS*
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mRNA from alignment at tig00000941_pilon:103811..104986+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4605.t1 ID=Ggra4605.t1|Name=Ggra4605.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000941_pilon:103811..104986+ (Gracilaria gracilis GNS1m male)
ATGGCGCGCTTGTCGCCTTCTTGCTCGCCGCCTTCTTGCTCGCCGCCTTC
TTGCTCGCCGCCTTCGTCGCCGCGCCGCTCGCCTTCCATGTCGCCTTCAA
TGTCGCCGCGCCACTCCGACACGTCGCTCAACAGCGTGTCGGCGCCGCTT
TCGTGCCCGCGCGCCAACGCCGCTAccgccaccgccgccgacgccgccgc
cgccgccgccgccgccgcTTGTGACGCGCTTGTGCTTCCGCTGCCGGCGC
ATGCGAGCACCAGCACCATCTCGCGCTCCAGCCACGCCAGCAACGACGAC
CACTTCTTGCACCCGCCCTCCTTCACGCGCCTGCCCAAGGCGAAGGTATT
CGTGCGTCGCGAGCCCAGTCGAATCGCCGCCGAGCGcagcaacaaaaaca
aaaacaacgacaacaacaacaacaacagcagcagcaacTCGCAACACCGC
TGTCTACCACGCCCCAACAAGCCGGCCGACAAGCGCTGCGTATCGGACAT
ACACGACGTGTACCACGTCAAGCACAGCCACAGTCGGCCCATGCCTCACG
CGCACGCCGCCGACAAGCACCAGCGCGTGCGCACCGACTTGCACGCGCTG
GTCGACCAGCTGCCGGACGTGCACCACGTGCCGCACTGGATTCCGCGCGA
TGAGCGCAGGGATTGGACTGCTGCGGAGCACGCGGTGGACCCGTTCGACC
CGTGCGAAGTCGAGAGTGATCACCACCCGTCCAGCCGATGGGCCACCAGC
CTACGAAATCTTGCAAACATGTACAAACCAAAGACGACCAAACCGTCTGC
TGTTCGCGGCTCCGTGCTGCAGGTGCAGCCGCCGACGCTTGGTGAACGAC
TGGGCTTGTCAACCAAGGGCGATAAGCGTCGCCACGCCGCCACCAAGTCA
AGTCAGGctgctactacttgtgctcagtggtctactactaccactaccac
cactagcaacaccaccaccaccaaccaAAGCTGTGCGCACGCGCCCAagc
agcagcagcggcagcagcggcagcagcagcagcagAGCGAGCACATGAGC
TGCTACGCCGATGACTACGTGGGCTTCTTGGAAAAGCCGTCAGCAAAGGT
GCTGCATCAACGGCATCGATCGTCGTGGTTTCGTTTCCTGCGGCGCGGTC
GCCACCGCGCGGCAGCGCGCTCGTAG
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Coding sequence (CDS) from alignment at tig00000941_pilon:103811..104986+

>Ggra4605.t1 ID=Ggra4605.t1|Name=Ggra4605.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1176bp|location=Sequence derived from alignment at tig00000941_pilon:103811..104986+ (Gracilaria gracilis GNS1m male)
ATGGCGCGCTTGTCGCCTTCTTGCTCGCCGCCTTCTTGCTCGCCGCCTTC
TTGCTCGCCGCCTTCGTCGCCGCGCCGCTCGCCTTCCATGTCGCCTTCAA
TGTCGCCGCGCCACTCCGACACGTCGCTCAACAGCGTGTCGGCGCCGCTT
TCGTGCCCGCGCGCCAACGCCGCTAccgccaccgccgccgacgccgccgc
cgccgccgccgccgccgcTTGTGACGCGCTTGTGCTTCCGCTGCCGGCGC
ATGCGAGCACCAGCACCATCTCGCGCTCCAGCCACGCCAGCAACGACGAC
CACTTCTTGCACCCGCCCTCCTTCACGCGCCTGCCCAAGGCGAAGGTATT
CGTGCGTCGCGAGCCCAGTCGAATCGCCGCCGAGCGcagcaacaaaaaca
aaaacaacgacaacaacaacaacaacagcagcagcaacTCGCAACACCGC
TGTCTACCACGCCCCAACAAGCCGGCCGACAAGCGCTGCGTATCGGACAT
ACACGACGTGTACCACGTCAAGCACAGCCACAGTCGGCCCATGCCTCACG
CGCACGCCGCCGACAAGCACCAGCGCGTGCGCACCGACTTGCACGCGCTG
GTCGACCAGCTGCCGGACGTGCACCACGTGCCGCACTGGATTCCGCGCGA
TGAGCGCAGGGATTGGACTGCTGCGGAGCACGCGGTGGACCCGTTCGACC
CGTGCGAAGTCGAGAGTGATCACCACCCGTCCAGCCGATGGGCCACCAGC
CTACGAAATCTTGCAAACATGTACAAACCAAAGACGACCAAACCGTCTGC
TGTTCGCGGCTCCGTGCTGCAGGTGCAGCCGCCGACGCTTGGTGAACGAC
TGGGCTTGTCAACCAAGGGCGATAAGCGTCGCCACGCCGCCACCAAGTCA
AGTCAGGctgctactacttgtgctcagtggtctactactaccactaccac
cactagcaacaccaccaccaccaaccaAAGCTGTGCGCACGCGCCCAagc
agcagcagcggcagcagcggcagcagcagcagcagAGCGAGCACATGAGC
TGCTACGCCGATGACTACGTGGGCTTCTTGGAAAAGCCGTCAGCAAAGGT
GCTGCATCAACGGCATCGATCGTCGTGGTTTCGTTTCCTGCGGCGCGGTC
GCCACCGCGCGGCAGCGCGCTCGTAG
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