Ggra4604.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4604.t1
Unique NameGgra4604.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:97802..99373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1192034.CAP_8195
PFAMsMetallophos
Max annot lvl1224|Proteobacteria
Evalue3e-13
EggNOG OGsCOG5555@1|root,COG5555@2|Bacteria,1NBMC@1224|Proteobacteria
DescriptionCalcineurin-like phosphoesterase
COG categoryN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4604Ggra4604Gracilaria gracilis GNS1m malegenetig00000941_pilon 97802..99373 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4604.t1.stop1Ggra4604.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 97802..97804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4604.t1.CDS1Ggra4604.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 97802..99373 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4604.t1.exon1Ggra4604.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 97802..99373 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4604.t1.start1Ggra4604.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 99371..99373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4604.t1Ggra4604.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 97802..99373 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4604.t1 ID=Ggra4604.t1|Name=Ggra4604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp
MSKIKLLFVPFFITAFCLSHAAPTARLTGSSCASADCADTSTFCNSALEC
EPITYSRYPISEGAAGSGSTSFDIVMATDVQLYFTNCKNEPLGDCIFTGV
RPRRRESVLITATENQVDCITTLVNAPDRDVKAIFNNGDITNGGTQEELD
DVITYFHQPVSNLGIPMIVGLGNHDYANTIPAEPERKRMIDFLASSIDTL
TSSGFKIRSIDWQVSPTIFNHHSTRSQDEVHNQGSFSYSFEINQYVFIVL
HWSTGLPTGRYRDYFSAPGPTFEEYYDVTNVEDYLRAELISATNDGKSII
LVPHTWRGLEKFINNRGLDTAIEAAPVVAILAGHDHDQWGLFKNVQYGAT
NPRTVPVYYAGSTSYQRLIAAKFDAGGSGITVDVYDTSSGSSCSTTGADV
ARFVIPEFDELKIELNGSNRVLSLCDVKAKYGDNKFLESVSTTQSSEGEG
PAENALEDGLCSMTQVGEFHYWTARFRKGYSVKEIILEGNELVEGGLAGA
KVMWNGRMVGKVGISGSTHVLKF*
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spliced messenger RNA

>Ggra4604.t1 ID=Ggra4604.t1|Name=Ggra4604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000941_pilon:97802..99373- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAAATCAAGCTCTTGTTCGTCCCGTTCTTCATCACCGCTTTTTG
TCTTTCACATGCAGCACCAACAGCCCGTTTGACCGGCAGCTCCTGTGCGA
GCGCCGACTGTGCTGACACTTCCACATTTTGTAACAGTGCCTTGGAATGT
GAGCCCATCACCTATTCTCGGTATCCCATCTCCGAGGGGGCGGCCGGCTC
AGGCTCTACATCGTTCGACATTGTCATGGCAACCGACGTGCAACTGTACT
TCACCAATTGTAAGAATGAGCCACTTGGCGACTGCATCTTCACCGGTGTT
CGCCCAAGAAGGCGTGAAAGCGTTCTCATCACCGCCACCGAGAACCAAGT
TGACTGCATCACAACTCTTGTGAATGCTCCGGACAGAGACGTCAAGGCCA
TCTTCAACAATGGAGACATCACGAACGGTGGAACCCAGGAAGAATTGGAT
GATGTTATCACCTACTTTCACCAACCCGTCAGCAATCTGGGCATTCCGAT
GATTGTTGGTCTTGGAAACCATGACTATGCAAACACCATCCCAGCTGAGC
CGGAGCGAAAGCGTATGATCGACTTCCTTGCCTCGTCAATTGATACACTG
ACTTCGTCGGGTTTCAAGATTCGTAGCATCGACTGGCAAGTGTCCCCAAC
GATATTCAACCATCATTCGACAAGGTCACAAGACGAGGTACATAATCAAG
GAAGCTTCAGTTACTCGTTCGAGATTAATCAATATGTATTCATTGTGTTG
CATTGGTCCACTGGCTTGCCCACAGGCAGATATCGAGACTACTTTTCCGC
TCCCGGCCCTACATTCGAGGAGTACTATGACGTGACAAACGTTGAGGATT
ATCTGCGAGCCGAGTTGATATCTGCAACGAATGATGGAAAGTCGATCATT
CTCGTGCCTCATACGTGGAGAGGACTTGAGAAGTTTATCAACAATCGCGG
ACTTGATACTGCGATTGAAGCTGCTCCTGTGGTCGCTATTCTAGCTGGGC
ACGATCATGATCAATGGGGTCTCTTCAAGAATGTGCAGTACGGAGCAACA
AACCCTCGTACTGTACCGGTCTACTATGCGGGTTCTACATCGTATCAACG
TTTGATTGCTGCCAAGTTCGATGCCGGAGGTAGTGGCATCACAGTCGACG
TTTACGACACTTCTTCTGGCTCATCTTGTTCTACGACTGGTGCTGATGTG
GCTCGATTCGTCATCCCAGAGTTTGATGAGCTGAAGATCGAGTTGAACGG
AAGCAACAGGGTGCTTTCTTTGTGCGATGTGAAGGCCAAATACGGCGACA
ACAAGTTCCTTGAGTCGGTTTCTACCACACAGAGTTCTGAAGGGGAGGGA
CCGGCCGAGAACGCTTTGGAAGACGGGCTGTGCAGTATGACTCAAGTTGG
CGAGTTTCATTATTGGACAGCCCGATTTAGAAAAGGATATTCTGTGAAGG
AGATTATTCTGGAGGGGAATGAGTTGGTTGAGGGCGGACTGGCCGGGGCG
AAAGTAATGTGGAATGGTCGGATGGTTGGCAAGGTGGGCATCTCTGGGAG
CACGCACGTGCTCAAGTTTTAA
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protein sequence of Ggra4604.t1

>Ggra4604.t1 ID=Ggra4604.t1|Name=Ggra4604.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=524bp
MSKIKLLFVPFFITAFCLSHAAPTARLTGSSCASADCADTSTFCNSALEC
EPITYSRYPISEGAAGSGSTSFDIVMATDVQLYFTNCKNEPLGDCIFTGV
RPRRRESVLITATENQVDCITTLVNAPDRDVKAIFNNGDITNGGTQEELD
DVITYFHQPVSNLGIPMIVGLGNHDYANTIPAEPERKRMIDFLASSIDTL
TSSGFKIRSIDWQVSPTIFNHHSTRSQDEVHNQGSFSYSFEINQYVFIVL
HWSTGLPTGRYRDYFSAPGPTFEEYYDVTNVEDYLRAELISATNDGKSII
LVPHTWRGLEKFINNRGLDTAIEAAPVVAILAGHDHDQWGLFKNVQYGAT
NPRTVPVYYAGSTSYQRLIAAKFDAGGSGITVDVYDTSSGSSCSTTGADV
ARFVIPEFDELKIELNGSNRVLSLCDVKAKYGDNKFLESVSTTQSSEGEG
PAENALEDGLCSMTQVGEFHYWTARFRKGYSVKEIILEGNELVEGGLAGA
KVMWNGRMVGKVGISGSTHVLKF*
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mRNA from alignment at tig00000941_pilon:97802..99373-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4604.t1 ID=Ggra4604.t1|Name=Ggra4604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000941_pilon:97802..99373- (Gracilaria gracilis GNS1m male)
ATGTCCAAAATCAAGCTCTTGTTCGTCCCGTTCTTCATCACCGCTTTTTG
TCTTTCACATGCAGCACCAACAGCCCGTTTGACCGGCAGCTCCTGTGCGA
GCGCCGACTGTGCTGACACTTCCACATTTTGTAACAGTGCCTTGGAATGT
GAGCCCATCACCTATTCTCGGTATCCCATCTCCGAGGGGGCGGCCGGCTC
AGGCTCTACATCGTTCGACATTGTCATGGCAACCGACGTGCAACTGTACT
TCACCAATTGTAAGAATGAGCCACTTGGCGACTGCATCTTCACCGGTGTT
CGCCCAAGAAGGCGTGAAAGCGTTCTCATCACCGCCACCGAGAACCAAGT
TGACTGCATCACAACTCTTGTGAATGCTCCGGACAGAGACGTCAAGGCCA
TCTTCAACAATGGAGACATCACGAACGGTGGAACCCAGGAAGAATTGGAT
GATGTTATCACCTACTTTCACCAACCCGTCAGCAATCTGGGCATTCCGAT
GATTGTTGGTCTTGGAAACCATGACTATGCAAACACCATCCCAGCTGAGC
CGGAGCGAAAGCGTATGATCGACTTCCTTGCCTCGTCAATTGATACACTG
ACTTCGTCGGGTTTCAAGATTCGTAGCATCGACTGGCAAGTGTCCCCAAC
GATATTCAACCATCATTCGACAAGGTCACAAGACGAGGTACATAATCAAG
GAAGCTTCAGTTACTCGTTCGAGATTAATCAATATGTATTCATTGTGTTG
CATTGGTCCACTGGCTTGCCCACAGGCAGATATCGAGACTACTTTTCCGC
TCCCGGCCCTACATTCGAGGAGTACTATGACGTGACAAACGTTGAGGATT
ATCTGCGAGCCGAGTTGATATCTGCAACGAATGATGGAAAGTCGATCATT
CTCGTGCCTCATACGTGGAGAGGACTTGAGAAGTTTATCAACAATCGCGG
ACTTGATACTGCGATTGAAGCTGCTCCTGTGGTCGCTATTCTAGCTGGGC
ACGATCATGATCAATGGGGTCTCTTCAAGAATGTGCAGTACGGAGCAACA
AACCCTCGTACTGTACCGGTCTACTATGCGGGTTCTACATCGTATCAACG
TTTGATTGCTGCCAAGTTCGATGCCGGAGGTAGTGGCATCACAGTCGACG
TTTACGACACTTCTTCTGGCTCATCTTGTTCTACGACTGGTGCTGATGTG
GCTCGATTCGTCATCCCAGAGTTTGATGAGCTGAAGATCGAGTTGAACGG
AAGCAACAGGGTGCTTTCTTTGTGCGATGTGAAGGCCAAATACGGCGACA
ACAAGTTCCTTGAGTCGGTTTCTACCACACAGAGTTCTGAAGGGGAGGGA
CCGGCCGAGAACGCTTTGGAAGACGGGCTGTGCAGTATGACTCAAGTTGG
CGAGTTTCATTATTGGACAGCCCGATTTAGAAAAGGATATTCTGTGAAGG
AGATTATTCTGGAGGGGAATGAGTTGGTTGAGGGCGGACTGGCCGGGGCG
AAAGTAATGTGGAATGGTCGGATGGTTGGCAAGGTGGGCATCTCTGGGAG
CACGCACGTGCTCAAGTTTTAA
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Coding sequence (CDS) from alignment at tig00000941_pilon:97802..99373-

>Ggra4604.t1 ID=Ggra4604.t1|Name=Ggra4604.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000941_pilon:97802..99373- (Gracilaria gracilis GNS1m male)
ATGTCCAAAATCAAGCTCTTGTTCGTCCCGTTCTTCATCACCGCTTTTTG
TCTTTCACATGCAGCACCAACAGCCCGTTTGACCGGCAGCTCCTGTGCGA
GCGCCGACTGTGCTGACACTTCCACATTTTGTAACAGTGCCTTGGAATGT
GAGCCCATCACCTATTCTCGGTATCCCATCTCCGAGGGGGCGGCCGGCTC
AGGCTCTACATCGTTCGACATTGTCATGGCAACCGACGTGCAACTGTACT
TCACCAATTGTAAGAATGAGCCACTTGGCGACTGCATCTTCACCGGTGTT
CGCCCAAGAAGGCGTGAAAGCGTTCTCATCACCGCCACCGAGAACCAAGT
TGACTGCATCACAACTCTTGTGAATGCTCCGGACAGAGACGTCAAGGCCA
TCTTCAACAATGGAGACATCACGAACGGTGGAACCCAGGAAGAATTGGAT
GATGTTATCACCTACTTTCACCAACCCGTCAGCAATCTGGGCATTCCGAT
GATTGTTGGTCTTGGAAACCATGACTATGCAAACACCATCCCAGCTGAGC
CGGAGCGAAAGCGTATGATCGACTTCCTTGCCTCGTCAATTGATACACTG
ACTTCGTCGGGTTTCAAGATTCGTAGCATCGACTGGCAAGTGTCCCCAAC
GATATTCAACCATCATTCGACAAGGTCACAAGACGAGGTACATAATCAAG
GAAGCTTCAGTTACTCGTTCGAGATTAATCAATATGTATTCATTGTGTTG
CATTGGTCCACTGGCTTGCCCACAGGCAGATATCGAGACTACTTTTCCGC
TCCCGGCCCTACATTCGAGGAGTACTATGACGTGACAAACGTTGAGGATT
ATCTGCGAGCCGAGTTGATATCTGCAACGAATGATGGAAAGTCGATCATT
CTCGTGCCTCATACGTGGAGAGGACTTGAGAAGTTTATCAACAATCGCGG
ACTTGATACTGCGATTGAAGCTGCTCCTGTGGTCGCTATTCTAGCTGGGC
ACGATCATGATCAATGGGGTCTCTTCAAGAATGTGCAGTACGGAGCAACA
AACCCTCGTACTGTACCGGTCTACTATGCGGGTTCTACATCGTATCAACG
TTTGATTGCTGCCAAGTTCGATGCCGGAGGTAGTGGCATCACAGTCGACG
TTTACGACACTTCTTCTGGCTCATCTTGTTCTACGACTGGTGCTGATGTG
GCTCGATTCGTCATCCCAGAGTTTGATGAGCTGAAGATCGAGTTGAACGG
AAGCAACAGGGTGCTTTCTTTGTGCGATGTGAAGGCCAAATACGGCGACA
ACAAGTTCCTTGAGTCGGTTTCTACCACACAGAGTTCTGAAGGGGAGGGA
CCGGCCGAGAACGCTTTGGAAGACGGGCTGTGCAGTATGACTCAAGTTGG
CGAGTTTCATTATTGGACAGCCCGATTTAGAAAAGGATATTCTGTGAAGG
AGATTATTCTGGAGGGGAATGAGTTGGTTGAGGGCGGACTGGCCGGGGCG
AAAGTAATGTGGAATGGTCGGATGGTTGGCAAGGTGGGCATCTCTGGGAG
CACGCACGTGCTCAAGTTTTAA
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