Ggra4601.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4601.t1
Unique NameGgra4601.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:82106..83209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4641.GSMUA_Achr8P04100_001
PFAMsMethyltransf_28
Max annot lvl35493|Streptophyta
KEGG koko:K18164
KEGG Pathwayko04714,map04714
Evalue5.39e-52
EggNOG OGsCOG1565@1|root,KOG2901@2759|Eukaryota,37KEB@33090|Viridiplantae,3GDCS@35493|Streptophyta,3KVA1@4447|Liliopsida
DescriptionArginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)
COG categoryS
BRITEko00000,ko00001,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4601Ggra4601Gracilaria gracilis GNS1m malegenetig00000941_pilon 82106..83209 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4601.t1.stop1Ggra4601.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 82106..82108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4601.t1.CDS1Ggra4601.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 82106..83209 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4601.t1.exon1Ggra4601.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 82106..83209 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4601.t1.start1Ggra4601.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 83207..83209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4601.t1Ggra4601.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 82106..83209 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4601.t1 ID=Ggra4601.t1|Name=Ggra4601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=368bp
MRICLTHPQHGYYTTHPTIFGADGDFVTAPHITPVFSQLLGVWIANHVKT
NSLNDFELVELGPGTGRMLLDLLPTLNKLRVTPSSLTLFEASSELRNVQE
KALSSLPKKPSTRWTTTLSEALDGPPKSPVIILAHEFFDALPVHMLHKVP
SQAESQPQWRERLVDISEDSTVENPSFRFVLSKAATPAVALAQSLQEKQA
LPDRDVVEICADGISTAHRLAESISQRGGAALVIDYGSNMINKDTVRALS
KHDVSDVLSRPGECDVTADVNFSHLRHGVSSVPSMRFWGSITQRQFLLRL
GAAERFRVIGRTVIEGGGSDQEIDGKLLRLQQDYDRIVGVGEHNMGEVYK
AAVISHEKDGIPFAFVN*
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spliced messenger RNA

>Ggra4601.t1 ID=Ggra4601.t1|Name=Ggra4601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000941_pilon:82106..83209- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATTTGTCTGACACACCCCCAACATGGGTACTACACAACTCACCC
AACCATTTTTGGTGCCGATGGAGATTTTGTAACAGCGCCGCATATTACCC
CAGTCTTCTCACAGCTTCTAGGCGTATGGATTGCCAACCATGTGAAAACG
AACTCGCTGAATGACTTTGAGCTTGTCGAACTCGGCCCCGGGACAGGCCG
GATGTTACTGGATTTACTTCCCACCTTGAACAAACTGCGGGTGACGCCTT
CTTCGCTTACGTTATTTGAGGCGAGTTCTGAGTTGCGAAATGTGCAAGAG
AAGGCGCTCTCCTCGCTACCTAAGAAGCCGAGTACGCGCTGGACAACCAC
CTTGTCCGAAGCACTCGACGGACCACCCAAGAGCCCAGTTATTATTCTTG
CTCACGAATTCTTTGACGCTTTACCGGTTCACATGTTGCACAAAGTACCT
TCCCAAGCCGAATCGCAGCCCCAATGGCGGGAGCGCCTTGTGGATATCAG
CGAAGATTCGACAGTTGAAAATCCTAGTTTCCGATTTGTTTTGTCCAAAG
CAGCTACACCTGCTGTCGCACTAGCCCAATCGCTACAAGAGAAACAGGCC
TTACCTGACCGCGACGTGGTCGAAATATGCGCAGATGGCATTTCGACTGC
GCACAGACTTGCAGAATCAATAAGTCAGAGGGGGGGTGCCGCTTTGGTTA
TAGATTATGGTTCAAATATGATCAACAAGGATACGGTGCGTGCCCTTTCA
AAGCACGATGTCTCAGACGTTCTCTCTCGACCTGGAGAATGCGATGTGAC
TGCTGACGTCAACTTCAGTCACTTGCGACATGGGGTTTCCAGCGTTCCTT
CTATGCGCTTCTGGGGAAGCATAACGCAGAGACAATTCCTATTACGTCTA
GGAGCTGCTGAGAGATTTCGTGTAATTGGTAGAACTGTCATCGAAGGTGG
TGGATCTGACCAAGAGATTGATGGAAAACTGCTAAGATTGCAGCAGGATT
ACGATCGAATCGTGGGTGTTGGAGAGCACAACATGGGAGAGGTTTACAAG
GCAGCGGTCATCTCCCACGAGAAAGACGGTATCCCCTTTGCATTTGTGAA
CTAA
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protein sequence of Ggra4601.t1

>Ggra4601.t1 ID=Ggra4601.t1|Name=Ggra4601.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=368bp
MRICLTHPQHGYYTTHPTIFGADGDFVTAPHITPVFSQLLGVWIANHVKT
NSLNDFELVELGPGTGRMLLDLLPTLNKLRVTPSSLTLFEASSELRNVQE
KALSSLPKKPSTRWTTTLSEALDGPPKSPVIILAHEFFDALPVHMLHKVP
SQAESQPQWRERLVDISEDSTVENPSFRFVLSKAATPAVALAQSLQEKQA
LPDRDVVEICADGISTAHRLAESISQRGGAALVIDYGSNMINKDTVRALS
KHDVSDVLSRPGECDVTADVNFSHLRHGVSSVPSMRFWGSITQRQFLLRL
GAAERFRVIGRTVIEGGGSDQEIDGKLLRLQQDYDRIVGVGEHNMGEVYK
AAVISHEKDGIPFAFVN*
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mRNA from alignment at tig00000941_pilon:82106..83209-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4601.t1 ID=Ggra4601.t1|Name=Ggra4601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000941_pilon:82106..83209- (Gracilaria gracilis GNS1m male)
ATGCGCATTTGTCTGACACACCCCCAACATGGGTACTACACAACTCACCC
AACCATTTTTGGTGCCGATGGAGATTTTGTAACAGCGCCGCATATTACCC
CAGTCTTCTCACAGCTTCTAGGCGTATGGATTGCCAACCATGTGAAAACG
AACTCGCTGAATGACTTTGAGCTTGTCGAACTCGGCCCCGGGACAGGCCG
GATGTTACTGGATTTACTTCCCACCTTGAACAAACTGCGGGTGACGCCTT
CTTCGCTTACGTTATTTGAGGCGAGTTCTGAGTTGCGAAATGTGCAAGAG
AAGGCGCTCTCCTCGCTACCTAAGAAGCCGAGTACGCGCTGGACAACCAC
CTTGTCCGAAGCACTCGACGGACCACCCAAGAGCCCAGTTATTATTCTTG
CTCACGAATTCTTTGACGCTTTACCGGTTCACATGTTGCACAAAGTACCT
TCCCAAGCCGAATCGCAGCCCCAATGGCGGGAGCGCCTTGTGGATATCAG
CGAAGATTCGACAGTTGAAAATCCTAGTTTCCGATTTGTTTTGTCCAAAG
CAGCTACACCTGCTGTCGCACTAGCCCAATCGCTACAAGAGAAACAGGCC
TTACCTGACCGCGACGTGGTCGAAATATGCGCAGATGGCATTTCGACTGC
GCACAGACTTGCAGAATCAATAAGTCAGAGGGGGGGTGCCGCTTTGGTTA
TAGATTATGGTTCAAATATGATCAACAAGGATACGGTGCGTGCCCTTTCA
AAGCACGATGTCTCAGACGTTCTCTCTCGACCTGGAGAATGCGATGTGAC
TGCTGACGTCAACTTCAGTCACTTGCGACATGGGGTTTCCAGCGTTCCTT
CTATGCGCTTCTGGGGAAGCATAACGCAGAGACAATTCCTATTACGTCTA
GGAGCTGCTGAGAGATTTCGTGTAATTGGTAGAACTGTCATCGAAGGTGG
TGGATCTGACCAAGAGATTGATGGAAAACTGCTAAGATTGCAGCAGGATT
ACGATCGAATCGTGGGTGTTGGAGAGCACAACATGGGAGAGGTTTACAAG
GCAGCGGTCATCTCCCACGAGAAAGACGGTATCCCCTTTGCATTTGTGAA
CTAA
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Coding sequence (CDS) from alignment at tig00000941_pilon:82106..83209-

>Ggra4601.t1 ID=Ggra4601.t1|Name=Ggra4601.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00000941_pilon:82106..83209- (Gracilaria gracilis GNS1m male)
ATGCGCATTTGTCTGACACACCCCCAACATGGGTACTACACAACTCACCC
AACCATTTTTGGTGCCGATGGAGATTTTGTAACAGCGCCGCATATTACCC
CAGTCTTCTCACAGCTTCTAGGCGTATGGATTGCCAACCATGTGAAAACG
AACTCGCTGAATGACTTTGAGCTTGTCGAACTCGGCCCCGGGACAGGCCG
GATGTTACTGGATTTACTTCCCACCTTGAACAAACTGCGGGTGACGCCTT
CTTCGCTTACGTTATTTGAGGCGAGTTCTGAGTTGCGAAATGTGCAAGAG
AAGGCGCTCTCCTCGCTACCTAAGAAGCCGAGTACGCGCTGGACAACCAC
CTTGTCCGAAGCACTCGACGGACCACCCAAGAGCCCAGTTATTATTCTTG
CTCACGAATTCTTTGACGCTTTACCGGTTCACATGTTGCACAAAGTACCT
TCCCAAGCCGAATCGCAGCCCCAATGGCGGGAGCGCCTTGTGGATATCAG
CGAAGATTCGACAGTTGAAAATCCTAGTTTCCGATTTGTTTTGTCCAAAG
CAGCTACACCTGCTGTCGCACTAGCCCAATCGCTACAAGAGAAACAGGCC
TTACCTGACCGCGACGTGGTCGAAATATGCGCAGATGGCATTTCGACTGC
GCACAGACTTGCAGAATCAATAAGTCAGAGGGGGGGTGCCGCTTTGGTTA
TAGATTATGGTTCAAATATGATCAACAAGGATACGGTGCGTGCCCTTTCA
AAGCACGATGTCTCAGACGTTCTCTCTCGACCTGGAGAATGCGATGTGAC
TGCTGACGTCAACTTCAGTCACTTGCGACATGGGGTTTCCAGCGTTCCTT
CTATGCGCTTCTGGGGAAGCATAACGCAGAGACAATTCCTATTACGTCTA
GGAGCTGCTGAGAGATTTCGTGTAATTGGTAGAACTGTCATCGAAGGTGG
TGGATCTGACCAAGAGATTGATGGAAAACTGCTAAGATTGCAGCAGGATT
ACGATCGAATCGTGGGTGTTGGAGAGCACAACATGGGAGAGGTTTACAAG
GCAGCGGTCATCTCCCACGAGAAAGACGGTATCCCCTTTGCATTTGTGAA
CTAA
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