Ggra460.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra460.t1
Unique NameGgra460.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000242_piloncontigtig00000242_pilon:56128..57444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra460Ggra460Gracilaria gracilis GNS1m malegenetig00000242_pilon 56128..57444 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra460.t1.stop1Ggra460.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000242_pilon 56128..56130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra460.t1.CDS1Ggra460.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000242_pilon 56128..57444 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra460.t1.exon1Ggra460.t1.exon1Gracilaria gracilis GNS1m maleexontig00000242_pilon 56128..57444 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra460.t1.start1Ggra460.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000242_pilon 57442..57444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra460.t1Ggra460.t1Gracilaria gracilis GNS1m malepolypeptidetig00000242_pilon 56128..57444 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra460.t1 ID=Ggra460.t1|Name=Ggra460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=439bp
MSLIDRGKEIVDLVAVVGLSTLPSPARRCPLQFNPFLDPDRNRRFLASAY
YSEGKFQRVVMEESKDIFPSSLHFRQNISVTTSGESAWELNSLPSLPSDA
YKTVNSTSRRSSVVPVHGMPSYAEDLMESALIAANDKETTCDEANAVSSQ
AIEAHFIDSNQASINPAYGPEVGPQPESPRSATSVEESNAIAKSTVAEGL
QVIVDGKLKDDVKQFRTQRERSYNASPTSATKSGDRGGTPSSQFVRKISP
DLKEGLVPMKRLDNSPNDSETRRTAKFEGNGSPRSDMKPGEDSHNDGAGA
DKERNLSKARSLRKLLALGKSGSEDSPSRKNSLRNLLRKTSKTLRLNMLD
GGKQPGGDVGRMNKSRELHVPNTAEEREPVSKGKRSTLPDRTTPKRDVEE
AAKAGGGPTPEASDNDFEKIIMKQALHVEKYLDDLVSP*
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spliced messenger RNA

>Ggra460.t1 ID=Ggra460.t1|Name=Ggra460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000242_pilon:56128..57444- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTCATCGACCGTGGGAAAGAAATCGTTGACTTAGTCGCTGTAGT
TGGTCTTTCCACATTACCCTCTCCCGCAAGAAGATGTCCTCTTCAATTCA
ACCCATTTCTTGATCCAGACAGGAATCGTCGTTTCTTAGCCTCTGCATAC
TACAGCGAGGGCAAGTTCCAAAGGGTGGTAATGGAAGAGTCAAAGGACAT
TTTTCCTTCATCGCTTCACTTTCGGCAAAACATTTCGGTCACAACCTCAG
GAGAATCTGCATGGGAGTTAAACTCGCTGCCCTCGCTTCCTAGCGATGCT
TACAAAACTGTGAATAGCACTTCCAGAAGATCTTCAGTTGTGCCAGTTCA
TGGAATGCCCAGCTACGCCGAAGACCTGATGGAAAGTGCTTTGATTGCAG
CGAATGACAAAGAAACAACATGTGATGAAGCAAATGCAGTCTCGTCGCAA
GCGATTGAGGCTCACTTCATTGATTCGAATCAAGCTTCAATAAATCCCGC
TTATGGCCCTGAGGTCGGCCCTCAACCTGAGTCACCACGATCAGCTACAA
GCGTTGAGGAATCTAATGCGATTGCAAAGAGCACTGTCGCGGAGGGTCTG
CAAGTCATTGTGGACGGAAAACTGAAAGACGATGTTAAACAGTTTCGCAC
GCAAAGGGAACGGTCGTATAACGCGTCTCCAACCTCGGCCACAAAAAGTG
GGGACCGGGGTGGAACGCCATCCTCCCAATTCGTTCGCAAGATCTCACCA
GACCTCAAAGAAGGTTTGGTTCCGATGAAAAGACTGGACAACAGCCCCAA
CGACAGCGAAACGCGGAGAACAGCAAAATTCGAAGGCAACGGGTCTCCTC
GCTCGGACATGAAGCCCGGAGAAGACTCTCACAACGATGGTGCCGGGGCC
GACAAGGAACGGAATCTATCCAAAGCAAGGTCTTTAAGGAAGCTTCTTGC
TCTCGGCAAAAGCGGCAGCGAGGACTCGCCCTCCAGAAAGAATTCGCTAC
GCAATCTGCTGCGCAAGACTTCCAAAACATTGAGGTTGAATATGTTAGAC
GGTGGAAAGCAACCCGGGGGCGACGTTGGACGGATGAACAAATCCAGAGA
GCTACATGTTCCAAACACAGCTGAAGAGCGCGAACCAGTCTCGAAAGGTA
AGCGTTCGACTTTGCCAGACAGAACGACGCCGAAGCGCGACGTCGAGGAA
GCTGCCAAGGCTGGTGGGGGACCCACTCCAGAAGCGAGTGACAATGACTT
TGAGAAAATTATCATGAAGCAAGCCCTGCACGTGGAGAAATACTTGGATG
ACTTGGTGTCGCCATGA
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protein sequence of Ggra460.t1

>Ggra460.t1 ID=Ggra460.t1|Name=Ggra460.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=439bp
MSLIDRGKEIVDLVAVVGLSTLPSPARRCPLQFNPFLDPDRNRRFLASAY
YSEGKFQRVVMEESKDIFPSSLHFRQNISVTTSGESAWELNSLPSLPSDA
YKTVNSTSRRSSVVPVHGMPSYAEDLMESALIAANDKETTCDEANAVSSQ
AIEAHFIDSNQASINPAYGPEVGPQPESPRSATSVEESNAIAKSTVAEGL
QVIVDGKLKDDVKQFRTQRERSYNASPTSATKSGDRGGTPSSQFVRKISP
DLKEGLVPMKRLDNSPNDSETRRTAKFEGNGSPRSDMKPGEDSHNDGAGA
DKERNLSKARSLRKLLALGKSGSEDSPSRKNSLRNLLRKTSKTLRLNMLD
GGKQPGGDVGRMNKSRELHVPNTAEEREPVSKGKRSTLPDRTTPKRDVEE
AAKAGGGPTPEASDNDFEKIIMKQALHVEKYLDDLVSP*
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mRNA from alignment at tig00000242_pilon:56128..57444-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra460.t1 ID=Ggra460.t1|Name=Ggra460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000242_pilon:56128..57444- (Gracilaria gracilis GNS1m male)
ATGAGTCTCATCGACCGTGGGAAAGAAATCGTTGACTTAGTCGCTGTAGT
TGGTCTTTCCACATTACCCTCTCCCGCAAGAAGATGTCCTCTTCAATTCA
ACCCATTTCTTGATCCAGACAGGAATCGTCGTTTCTTAGCCTCTGCATAC
TACAGCGAGGGCAAGTTCCAAAGGGTGGTAATGGAAGAGTCAAAGGACAT
TTTTCCTTCATCGCTTCACTTTCGGCAAAACATTTCGGTCACAACCTCAG
GAGAATCTGCATGGGAGTTAAACTCGCTGCCCTCGCTTCCTAGCGATGCT
TACAAAACTGTGAATAGCACTTCCAGAAGATCTTCAGTTGTGCCAGTTCA
TGGAATGCCCAGCTACGCCGAAGACCTGATGGAAAGTGCTTTGATTGCAG
CGAATGACAAAGAAACAACATGTGATGAAGCAAATGCAGTCTCGTCGCAA
GCGATTGAGGCTCACTTCATTGATTCGAATCAAGCTTCAATAAATCCCGC
TTATGGCCCTGAGGTCGGCCCTCAACCTGAGTCACCACGATCAGCTACAA
GCGTTGAGGAATCTAATGCGATTGCAAAGAGCACTGTCGCGGAGGGTCTG
CAAGTCATTGTGGACGGAAAACTGAAAGACGATGTTAAACAGTTTCGCAC
GCAAAGGGAACGGTCGTATAACGCGTCTCCAACCTCGGCCACAAAAAGTG
GGGACCGGGGTGGAACGCCATCCTCCCAATTCGTTCGCAAGATCTCACCA
GACCTCAAAGAAGGTTTGGTTCCGATGAAAAGACTGGACAACAGCCCCAA
CGACAGCGAAACGCGGAGAACAGCAAAATTCGAAGGCAACGGGTCTCCTC
GCTCGGACATGAAGCCCGGAGAAGACTCTCACAACGATGGTGCCGGGGCC
GACAAGGAACGGAATCTATCCAAAGCAAGGTCTTTAAGGAAGCTTCTTGC
TCTCGGCAAAAGCGGCAGCGAGGACTCGCCCTCCAGAAAGAATTCGCTAC
GCAATCTGCTGCGCAAGACTTCCAAAACATTGAGGTTGAATATGTTAGAC
GGTGGAAAGCAACCCGGGGGCGACGTTGGACGGATGAACAAATCCAGAGA
GCTACATGTTCCAAACACAGCTGAAGAGCGCGAACCAGTCTCGAAAGGTA
AGCGTTCGACTTTGCCAGACAGAACGACGCCGAAGCGCGACGTCGAGGAA
GCTGCCAAGGCTGGTGGGGGACCCACTCCAGAAGCGAGTGACAATGACTT
TGAGAAAATTATCATGAAGCAAGCCCTGCACGTGGAGAAATACTTGGATG
ACTTGGTGTCGCCATGA
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Coding sequence (CDS) from alignment at tig00000242_pilon:56128..57444-

>Ggra460.t1 ID=Ggra460.t1|Name=Ggra460.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1317bp|location=Sequence derived from alignment at tig00000242_pilon:56128..57444- (Gracilaria gracilis GNS1m male)
ATGAGTCTCATCGACCGTGGGAAAGAAATCGTTGACTTAGTCGCTGTAGT
TGGTCTTTCCACATTACCCTCTCCCGCAAGAAGATGTCCTCTTCAATTCA
ACCCATTTCTTGATCCAGACAGGAATCGTCGTTTCTTAGCCTCTGCATAC
TACAGCGAGGGCAAGTTCCAAAGGGTGGTAATGGAAGAGTCAAAGGACAT
TTTTCCTTCATCGCTTCACTTTCGGCAAAACATTTCGGTCACAACCTCAG
GAGAATCTGCATGGGAGTTAAACTCGCTGCCCTCGCTTCCTAGCGATGCT
TACAAAACTGTGAATAGCACTTCCAGAAGATCTTCAGTTGTGCCAGTTCA
TGGAATGCCCAGCTACGCCGAAGACCTGATGGAAAGTGCTTTGATTGCAG
CGAATGACAAAGAAACAACATGTGATGAAGCAAATGCAGTCTCGTCGCAA
GCGATTGAGGCTCACTTCATTGATTCGAATCAAGCTTCAATAAATCCCGC
TTATGGCCCTGAGGTCGGCCCTCAACCTGAGTCACCACGATCAGCTACAA
GCGTTGAGGAATCTAATGCGATTGCAAAGAGCACTGTCGCGGAGGGTCTG
CAAGTCATTGTGGACGGAAAACTGAAAGACGATGTTAAACAGTTTCGCAC
GCAAAGGGAACGGTCGTATAACGCGTCTCCAACCTCGGCCACAAAAAGTG
GGGACCGGGGTGGAACGCCATCCTCCCAATTCGTTCGCAAGATCTCACCA
GACCTCAAAGAAGGTTTGGTTCCGATGAAAAGACTGGACAACAGCCCCAA
CGACAGCGAAACGCGGAGAACAGCAAAATTCGAAGGCAACGGGTCTCCTC
GCTCGGACATGAAGCCCGGAGAAGACTCTCACAACGATGGTGCCGGGGCC
GACAAGGAACGGAATCTATCCAAAGCAAGGTCTTTAAGGAAGCTTCTTGC
TCTCGGCAAAAGCGGCAGCGAGGACTCGCCCTCCAGAAAGAATTCGCTAC
GCAATCTGCTGCGCAAGACTTCCAAAACATTGAGGTTGAATATGTTAGAC
GGTGGAAAGCAACCCGGGGGCGACGTTGGACGGATGAACAAATCCAGAGA
GCTACATGTTCCAAACACAGCTGAAGAGCGCGAACCAGTCTCGAAAGGTA
AGCGTTCGACTTTGCCAGACAGAACGACGCCGAAGCGCGACGTCGAGGAA
GCTGCCAAGGCTGGTGGGGGACCCACTCCAGAAGCGAGTGACAATGACTT
TGAGAAAATTATCATGAAGCAAGCCCTGCACGTGGAGAAATACTTGGATG
ACTTGGTGTCGCCATGA
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