Ggra4597.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4597.t1
Unique NameGgra4597.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length505
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:74620..76712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX47858
Preferred nameTBCB
PFAMsCAP_GLY,Ubiquitin_2
Max annot lvl2759|Eukaryota
KEGG koko:K10423,ko:K17262
GOsGO:0000003,GO:0000226,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007389,GO:0008150,GO:0009524,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009987,GO:0009994,GO:0010154,GO:0015630,GO:0016043,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030010,GO:0030154,GO:0031122,GO:0032501,GO:0032502,GO:0032504,GO:0034622,GO:0035088,GO:0035089,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048316,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0051301,GO:0051704,GO:0061162,GO:0061245,GO:0061339,GO:0061458,GO:0065003,GO:0071840,GO:0071944,GO:0072686,GO:0097435,GO:0099568
Evalue1.51e-59
EggNOG OGsKOG3206@1|root,KOG3206@2759|Eukaryota
Descriptioncell differentiation
COG categoryS
BRITEko00000,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4597Ggra4597Gracilaria gracilis GNS1m malegenetig00000941_pilon 74620..76712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4597.t1Ggra4597.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 74620..76712 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4597.t1.start1Ggra4597.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 74620..74622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4597.t1.CDS1Ggra4597.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 74620..75245 +
Ggra4597.t1.CDS2Ggra4597.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000941_pilon 75824..76712 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4597.t1.exon1Ggra4597.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 74620..75245 +
Ggra4597.t1.exon2Ggra4597.t1.exon2Gracilaria gracilis GNS1m maleexontig00000941_pilon 75824..76712 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4597.t1.intron1Ggra4597.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000941_pilon 75246..75823 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4597.t1.stop1Ggra4597.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 76710..76712 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4597.t1 ID=Ggra4597.t1|Name=Ggra4597.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=505bp
MIRLVWTLFCLCVLFDSAVCSHSGKLHTLTRQSVPTFSDQTCTSLPSLIC
NVQPTAGNEVSGTVYFTPTWVPRSSDSEVFACYTRVTASLSGLPGPLHGF
HIHTYGDLSADDGSSTGGHFTNPAGDDILHGYPDDGVRHWGDFGNLQVGE
SGIAEYDRVDDVIRLGGILGRAITIHAENDKGVDEQPSGASGKRVGYCVI
GFSNPAVQSEQLSANSKRKHFAAAAVPAVMSEAPYSTPSTLPEVRDYVLQ
ETRSASRSDDTLLLNVRHSNLQHTRLAELRFNRHASVADVKQRLYLHTGT
SAAHMQLFVVAPDGQPKRKLVDDRLTLAQVPVVMGDSLLVVDDDPFSVSA
HGAIEDVSLVKKYDMPDDVYDNKPNSYRKFKQTMREKHPFWSMSSELRKK
QPQFAVDYAQEAPPIKVSDRVMVSPGEKRGQVRFVGNALSQLPEGWWVGV
CYDEPVGKNDGMVKGVRYFECDRNYGALVRPSSVQVGDFPPLDDFGDDGS
EDEI*
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spliced messenger RNA

>Ggra4597.t1 ID=Ggra4597.t1|Name=Ggra4597.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000941_pilon:74620..76712+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCGTCTTGTATGGACTTTGTTCTGTTTGTGTGTGCTGTTTGACAG
CGCCGTTTGTTCTCATTCAGGAAAGCTCCACACGCTAACTCGTCAATCAG
TGCCCACATTTTCCGACCAAACATGTACATCACTACCGTCGCTGATCTGT
AACGTACAGCCGACGGCTGGCAATGAAGTGAGTGGCACCGTGTATTTCAC
GCCCACCTGGGTTCCTCGCTCGAGTGACTCGGAGGTGTTTGCGTGTTACA
CACGCGTTACGGCGTCTCTTTCCGGGCTGCCTGGACCATTGCATGGCTTT
CACATCCACACGTATGGCGACCTCTCTGCGGACGATGGCTCTTCGACTGG
TGGACACTTTACAAATCCGGCAGGCGATGACATCCTGCACGGCTACCCTG
ATGACGGCGTGCGCCATTGGGGCGATTTCGGAAATCTGCAGGTTGGCGAG
TCGGGCATTGCCGAGTATGATCGCGTGGACGACGTGATTCGTCTCGGTGG
CATTTTGGGTCGCGCCATCACCATCCACGCCGAGAATGACAAGGGCGTGG
ACGAACAGCCTTCCGGCGCCTCTGGCAAAAGAGTGGGCTACTGTGTGATT
GGCTTCTCCAACCCGGCGGTTCAATCCGAGCAACTCTCGGCAAACTCCAA
GCGCAAGCACTTTGCCGCTGCAGCCGTCCCCGCCGTCATGAGCGAAGCGC
CTTACTCCACGCCAAGTACGCTGCCCGAGGTGCGCGACTACGTGCTGCAG
GAGACGCGCTCCGCGTCGCGCTCCGACGACACGCTGCTGCTCAATGTGCG
CCACTCCAATCTGCAACACACGCGCTTGGCCGAGCTGCGTTTCAACCGAC
ACGCCTCCGTCGCCGACGTCAAGCAGCGCCTGTATCTGCACACCGGCACT
TCTGCCGCGCACATGCAGCTCTTCGTCGTGGCGCCCGACGGCCAGCCCAA
GCGCAAGCTCGTCGACGATCGCCTCACGCTGGCGCAGGTGCCCGTCGTGA
TGGGCGACTCTTTGCTCGTTGTGGACGATGATCCCTTCTCCGTCAGCGCT
CATGGCGCTATCGAGGACGTTTCGCTCGTGAAAAAGTACGACATGCCGGA
TGATGTGTATGACAACAAGCCCAATTCGTACCGCAAGTTCAAGCAGACCA
TGAGGGAGAAGCATCCATTTTGGAGCATGTCGTCAGAGCTACGTAAGAAG
CAGCCGCAGTTCGCCGTGGACTATGCGCAGGAAGCGCCGCCTATAAAAGT
GTCCGATCGCGTCATGGTGTCGCCGGGCGAGAAGAGGGGCCAGGTGCGAT
TCGTCGGCAACGCGTTGAGCCAACTGCCAGAGGGCTGGTGGGTTGGCGTG
TGTTATGACGAGCCGGTTGGAAAGAACGATGGCATGGTGAAAGGCGTGCG
ATATTTTGAATGTGATCGCAATTATGGCGCCTTGGTTCGTCCCTCCTCCG
TGCAGGTTGGTGATTTCCCGCCCTTGGACGACTTTGGCGATGATGGCAGC
GAGGACGAAATCTGA
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protein sequence of Ggra4597.t1

>Ggra4597.t1 ID=Ggra4597.t1|Name=Ggra4597.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=505bp
MIRLVWTLFCLCVLFDSAVCSHSGKLHTLTRQSVPTFSDQTCTSLPSLIC
NVQPTAGNEVSGTVYFTPTWVPRSSDSEVFACYTRVTASLSGLPGPLHGF
HIHTYGDLSADDGSSTGGHFTNPAGDDILHGYPDDGVRHWGDFGNLQVGE
SGIAEYDRVDDVIRLGGILGRAITIHAENDKGVDEQPSGASGKRVGYCVI
GFSNPAVQSEQLSANSKRKHFAAAAVPAVMSEAPYSTPSTLPEVRDYVLQ
ETRSASRSDDTLLLNVRHSNLQHTRLAELRFNRHASVADVKQRLYLHTGT
SAAHMQLFVVAPDGQPKRKLVDDRLTLAQVPVVMGDSLLVVDDDPFSVSA
HGAIEDVSLVKKYDMPDDVYDNKPNSYRKFKQTMREKHPFWSMSSELRKK
QPQFAVDYAQEAPPIKVSDRVMVSPGEKRGQVRFVGNALSQLPEGWWVGV
CYDEPVGKNDGMVKGVRYFECDRNYGALVRPSSVQVGDFPPLDDFGDDGS
EDEI*
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mRNA from alignment at tig00000941_pilon:74620..76712+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4597.t1 ID=Ggra4597.t1|Name=Ggra4597.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2093bp|location=Sequence derived from alignment at tig00000941_pilon:74620..76712+ (Gracilaria gracilis GNS1m male)
ATGATCCGTCTTGTATGGACTTTGTTCTGTTTGTGTGTGCTGTTTGACAG
CGCCGTTTGTTCTCATTCAGGAAAGCTCCACACGCTAACTCGTCAATCAG
TGCCCACATTTTCCGACCAAACATGTACATCACTACCGTCGCTGATCTGT
AACGTACAGCCGACGGCTGGCAATGAAGTGAGTGGCACCGTGTATTTCAC
GCCCACCTGGGTTCCTCGCTCGAGTGACTCGGAGGTGTTTGCGTGTTACA
CACGCGTTACGGCGTCTCTTTCCGGGCTGCCTGGACCATTGCATGGCTTT
CACATCCACACGTATGGCGACCTCTCTGCGGACGATGGCTCTTCGACTGG
TGGACACTTTACAAATCCGGCAGGCGATGACATCCTGCACGGCTACCCTG
ATGACGGCGTGCGCCATTGGGGCGATTTCGGAAATCTGCAGGTTGGCGAG
TCGGGCATTGCCGAGTATGATCGCGTGGACGACGTGATTCGTCTCGGTGG
CATTTTGGGTCGCGCCATCACCATCCACGCCGAGAATGACAAGGGCGTGG
ACGAACAGCCTTCCGGCGCCTCTGGCAAAAGAGTGGGCTACTGTGTGATT
GGCTTCTCCAACCCGGCGGTTCAATCGTCCGCATAGACTGCGCTCTCTGC
ACGCCTTTGGCGTGCAGCGGGGAACGTGGGTGGAGGGCAACGGGCTTGTG
AGGTGAAAACTTGAGCGCGCGTTGCTTGCGCGTTTTGCGTGTGATTTTCG
AACATGAATGTTGACTAAAAACGATACGCATTTTATGTACAAGGTACAGT
ACCTTTGGTACATCATGTACGGTTTGCTTTGAGACCTATCATCAGTATGA
TACCGGCCGCATCATGCGCGTTGACGGCGCGTTGCTGACACGGCCGCAAG
CGCGCGCTCTCAGAGCGCTCCACACTCCACAGGTTAACTTCGTCCAAAGT
TACTTGTAGAAACGCAGTCCGTATcgtgccgcgtgcggccgctgcgcgcc
acgtgctgccgctgcgcgctCGAAACGTTTCACGCGCTCCAACACCATCG
CTCGCCTGTCGCGTGATGGGCGTGTAAATTTATCCTTTTATGACTATGAC
TCATCATGAGTGCAGTGGATCGCTTTGTCGTGGCATACGTGGCACTGCTG
GCATGCGTATGCATGATCATCATGTGATGTTTATTGTGCGCTTCCGTTTC
GCAGCGAGCAACTCTCGGCAAACTCCAAGCGCAAGCACTTTGCCGCTGCA
GCCGTCCCCGCCGTCATGAGCGAAGCGCCTTACTCCACGCCAAGTACGCT
GCCCGAGGTGCGCGACTACGTGCTGCAGGAGACGCGCTCCGCGTCGCGCT
CCGACGACACGCTGCTGCTCAATGTGCGCCACTCCAATCTGCAACACACG
CGCTTGGCCGAGCTGCGTTTCAACCGACACGCCTCCGTCGCCGACGTCAA
GCAGCGCCTGTATCTGCACACCGGCACTTCTGCCGCGCACATGCAGCTCT
TCGTCGTGGCGCCCGACGGCCAGCCCAAGCGCAAGCTCGTCGACGATCGC
CTCACGCTGGCGCAGGTGCCCGTCGTGATGGGCGACTCTTTGCTCGTTGT
GGACGATGATCCCTTCTCCGTCAGCGCTCATGGCGCTATCGAGGACGTTT
CGCTCGTGAAAAAGTACGACATGCCGGATGATGTGTATGACAACAAGCCC
AATTCGTACCGCAAGTTCAAGCAGACCATGAGGGAGAAGCATCCATTTTG
GAGCATGTCGTCAGAGCTACGTAAGAAGCAGCCGCAGTTCGCCGTGGACT
ATGCGCAGGAAGCGCCGCCTATAAAAGTGTCCGATCGCGTCATGGTGTCG
CCGGGCGAGAAGAGGGGCCAGGTGCGATTCGTCGGCAACGCGTTGAGCCA
ACTGCCAGAGGGCTGGTGGGTTGGCGTGTGTTATGACGAGCCGGTTGGAA
AGAACGATGGCATGGTGAAAGGCGTGCGATATTTTGAATGTGATCGCAAT
TATGGCGCCTTGGTTCGTCCCTCCTCCGTGCAGGTTGGTGATTTCCCGCC
CTTGGACGACTTTGGCGATGATGGCAGCGAGGACGAAATCTGA
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Coding sequence (CDS) from alignment at tig00000941_pilon:74620..76712+

>Ggra4597.t1 ID=Ggra4597.t1|Name=Ggra4597.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1515bp|location=Sequence derived from alignment at tig00000941_pilon:74620..76712+ (Gracilaria gracilis GNS1m male)
ATGATCCGTCTTGTATGGACTTTGTTCTGTTTGTGTGTGCTGTTTGACAG
CGCCGTTTGTTCTCATTCAGGAAAGCTCCACACGCTAACTCGTCAATCAG
TGCCCACATTTTCCGACCAAACATGTACATCACTACCGTCGCTGATCTGT
AACGTACAGCCGACGGCTGGCAATGAAGTGAGTGGCACCGTGTATTTCAC
GCCCACCTGGGTTCCTCGCTCGAGTGACTCGGAGGTGTTTGCGTGTTACA
CACGCGTTACGGCGTCTCTTTCCGGGCTGCCTGGACCATTGCATGGCTTT
CACATCCACACGTATGGCGACCTCTCTGCGGACGATGGCTCTTCGACTGG
TGGACACTTTACAAATCCGGCAGGCGATGACATCCTGCACGGCTACCCTG
ATGACGGCGTGCGCCATTGGGGCGATTTCGGAAATCTGCAGGTTGGCGAG
TCGGGCATTGCCGAGTATGATCGCGTGGACGACGTGATTCGTCTCGGTGG
CATTTTGGGTCGCGCCATCACCATCCACGCCGAGAATGACAAGGGCGTGG
ACGAACAGCCTTCCGGCGCCTCTGGCAAAAGAGTGGGCTACTGTGTGATT
GGCTTCTCCAACCCGGCGGTTCAATCCGAGCAACTCTCGGCAAACTCCAA
GCGCAAGCACTTTGCCGCTGCAGCCGTCCCCGCCGTCATGAGCGAAGCGC
CTTACTCCACGCCAAGTACGCTGCCCGAGGTGCGCGACTACGTGCTGCAG
GAGACGCGCTCCGCGTCGCGCTCCGACGACACGCTGCTGCTCAATGTGCG
CCACTCCAATCTGCAACACACGCGCTTGGCCGAGCTGCGTTTCAACCGAC
ACGCCTCCGTCGCCGACGTCAAGCAGCGCCTGTATCTGCACACCGGCACT
TCTGCCGCGCACATGCAGCTCTTCGTCGTGGCGCCCGACGGCCAGCCCAA
GCGCAAGCTCGTCGACGATCGCCTCACGCTGGCGCAGGTGCCCGTCGTGA
TGGGCGACTCTTTGCTCGTTGTGGACGATGATCCCTTCTCCGTCAGCGCT
CATGGCGCTATCGAGGACGTTTCGCTCGTGAAAAAGTACGACATGCCGGA
TGATGTGTATGACAACAAGCCCAATTCGTACCGCAAGTTCAAGCAGACCA
TGAGGGAGAAGCATCCATTTTGGAGCATGTCGTCAGAGCTACGTAAGAAG
CAGCCGCAGTTCGCCGTGGACTATGCGCAGGAAGCGCCGCCTATAAAAGT
GTCCGATCGCGTCATGGTGTCGCCGGGCGAGAAGAGGGGCCAGGTGCGAT
TCGTCGGCAACGCGTTGAGCCAACTGCCAGAGGGCTGGTGGGTTGGCGTG
TGTTATGACGAGCCGGTTGGAAAGAACGATGGCATGGTGAAAGGCGTGCG
ATATTTTGAATGTGATCGCAATTATGGCGCCTTGGTTCGTCCCTCCTCCG
TGCAGGTTGGTGATTTCCCGCCCTTGGACGACTTTGGCGATGATGGCAGC
GAGGACGAAATCTGA
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