Ggra4596.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4596.t1
Unique Name	Ggra4596.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	722

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000941_pilon	contig	tig00000941_pilon:71671..73836 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1041139.KB902746_gene3235
PFAMs	Glycos_transf_2,PilZ
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00005
KEGG ko	ko:K00694
KEGG TC	4.D.3.1.2,4.D.3.1.5,4.D.3.1.6
KEGG Reaction	R02889
KEGG Pathway	ko00500,ko01100,ko02026,map00500,map01100,map02026
Evalue	1.15e-45
EggNOG OGs	COG1215@1\|root,COG1215@2\|Bacteria,1MWF8@1224\|Proteobacteria,2TS1X@28211\|Alphaproteobacteria,4B8H3@82115\|Rhizobiaceae
EC	2.4.1.12
Description	Glycosyl transferase family 21
COG category	M
CAZy	GT2
BRITE	ko00000,ko00001,ko01000,ko01003,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4596	Ggra4596	Gracilaria gracilis GNS1m male	gene	tig00000941_pilon 71671..73836 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4596.t1.start1	Ggra4596.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000941_pilon 71671..71673 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4596.t1.CDS1	Ggra4596.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000941_pilon 71671..73836 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4596.t1.exon1	Ggra4596.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000941_pilon 71671..73836 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4596.t1.stop1	Ggra4596.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000941_pilon 73834..73836 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4596.t1	Ggra4596.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000941_pilon 71671..73836 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000941_pilon:71671..73836+
coding sequence from alignment at tig00000941_pilon:71671..73836+

mRNA sequence

>Ggra4596.t1 ID=Ggra4596.t1|Name=Ggra4596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=722bp
MAAAVAYIQFRFRFTIAVFDRSQTIAYQIYQYGFFAFELVTVGAIVFRLV
EIWNVSSRNCVDFRRIPNHMIAPRFSHSPRARVPAQYSNYPSVGVFIPCY
NEEVDLVLETVLGALNIDYPSELLTVYLCDDGKDPLKRNMISQLRKQYKN
VHYVIRPHHAHAKAGNLNYSLQRTTTHLVVTLDADFVARPNLLQRLIPYY
FVWNQQTELYEFNESLAVVQTPQHFRNLSPYDSDPLDQRSTFFAELVLPG
KDWFNSSTMIGTTNLLNREALQKANYYPYHSITEDTAMSLMFHSLGYRTY
YVNESLATGLATNSLWSNLRQRARWLKGDWQILFSSKGPLTARGLSLVQR
FLYMHMTYVRFISVVHLLYDIAAVLLLVGGISPLDSPNPIQFIIYISAFF
LTSLIQRSIVTMGGIGLRKSESGSVAFEAIFRYTTVKGLFIALFRGKNLA
FKVTDKAATKKKKRKNGKDESEKETCDNEEEKRSGEKFEQHARMTMLGRS
GPNEPGHGMVGDNEIEFENIDSVVVEIDSSSPSGETSDQRSAYSTSNEYD
STTTLSADDDGRTYKKFVRAKTAEERAERRREIRKNLKRIWFNVAMAIVL
AFSIVWGIVNPPKQVAGQDGVTVFRNPDIFPMAMALGFAMANLLPHLLAI
YLCFIPYVSGWVMSDLVHGRCDQYAVHPRTGKLFVPWSFIVLLEAAKGVL
ILGSMAFLLVYTLVDERNVGS*

spliced messenger RNA

>Ggra4596.t1 ID=Ggra4596.t1|Name=Ggra4596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2166bp|location=Sequence derived from alignment at tig00000941_pilon:71671..73836+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCTGCCGTTGCTTACATCCAGTTCCGGTTCCGCTTCACCATTGC
TGTTTTCGATCGCAGCCAGACTATTGCGTACCAAATCTACCAGTACGGCT
TCTTTGCGTTCGAGCTCGTCACCGTGGGCGCCATCGTGTTTCGCTTGGTG
GAGATTTGGAATGTCTCTTCAAGAAACTGCGTCGATTTCAGGAGGATCCC
CAATCATATGATTGCGCCTCGCTTTTCGCACTCGCCGAGAGCCCGAGTTC
CTGCCCAATACTCAAACTACCCTTCGGTGGGCGTGTTTATTCCGTGCTAC
AACGAAGAGGTTGATCTGGTCCTGGAGACTGTGTTGGGCGCCCTTAACAT
CGACTACCCCTCCGAACTACTAACTGTATACCTTTGTGATGACGGCAAGG
ATCCGCTCAAGAGAAATATGATCTCTCAGTTGCGCAAGCAATACAAGAAT
GTACACTATGTAATTCGCCCACATCACGCTCATGCAAAAGCTGGAAATCT
TAACTATTCTCTTCAACGAACTACTACTCACTTGGTTGTAACTCTTGACG
CTGACTTTGTTGCGAGACCTAATCTTTTACAACGACTTATTCCATACTAT
TTTGTGTGGAATCAACAAACAGAGCTGTACGAGTTCAATGAATCTCTTGC
AGTCGTACAAACTCCTCAACATTTTCGAAATCTGTCTCCGTATGACAGTG
ATCCGCTTGATCAACGTTCTACCTTTTTCGCCGAACTTGTGTTACCGGGT
AAGGATTGGTTCAATAGCTCCACAATGATTGGAACCACAAATCTCCTTAA
CCGCGAAGCATTGCAGAAAGCGAATTATTACCCGTATCATTCTATTACCG
AAGATACAGCCATGTCACTCATGTTTCATAGTTTGGGATATCGTACGTAT
TATGTGAACGAATCATTGGCAACTGGACTGGCTACCAACTCATTGTGGAG
CAATTTGCGGCAGAGAGCAAGATGGCTCAAAGGCGATTGGCAGATTCTAT
TTTCCTCAAAAGGACCATTGACGGCGCGTGGTCTTTCTCTCGTGCAGCGC
TTTTTGTACATGCATATGACGTATGTGCGCTTCATATCCGTTGTCCATTT
GCTGTATGATATCGCGGCGGTTTTGTTGCTGGTTGGCGGCATTTCTCCTT
TAGATTCTCCAAATCCGATCCAGTTCATCATCTACATCAGTGCGTTCTTC
CTGACGAGTCTTATTCAGCGGTCGATCGTGACGATGGGCGGAATTGGATT
GCGAAAGTCCGAGTCGGGGTCAGTAGCCTTTGAAGCGATTTTTCGATACA
CAACTGTGAAGGGTTTGTTCATTGCGCTGTTCAGGGGCAAGAATTTGGCG
TTTAAGGTTACTGATAAGGCCGCCACCAAGAAGAAGAAAAGAAAGAATGG
CAAAGATGAGAGCGAAAAAGAGACTTGCGATAATGAAGAGGAGAAGAGAA
GTGGAGAGAAGTTTGAGCAACACGCAAGAATGACAATGCTGGGGCGTTCA
GGCCCGAATGAGCCGGGCCATGGAATGGTTGGAGATAACGAGATTGAATT
TGAAAACATTGACTCGGTGGTGGTTGAGATTGATTCAAGCTCTCCGTCCG
GTGAAACCAGTGATCAACGCAGCGCGTACAGTACGAGCAATGAATACGAC
AGTACAACAACTCTGTCTGCAGATGATGACGGACGCACATACAAGAAGTT
TGTGCGGGCAAAAACGGCCGAGGAACGTGCAGAACGACGGAGAGAGATCC
GAAAGAACTTGAAACGAATCTGGTTCAACGTGGCGATGGCGATTGTACTA
GCGTTTTCCATCGTGTGGGGCATTGTGAACCCACCGAAACAAGTGGCGGG
CCAGGACGGGGTGACGGTGTTCCGGAATCCAGACATTTTCCCCATGGCGA
TGGCGCTGGGGTTCGCCATGGCCAACTTGCTACCACATCTGCTGGCGATT
TACCTGTGCTTCATTCCGTACGTGTCGGGATGGGTGATGTCGGACCTTGT
TCACGGACGGTGTGACCAGTATGCGGTGCACCCGCGAACGGGGAAGTTGT
TCGTGCCGTGGTCGTTCATCGTGCTGCTGGAAGCTGCGAAGGGGGTGTTG
ATTCTGGGGTCGATGGCGTTCCTGCTTGTGTATACCTTGGTTGACGAACG
AAACGTTGGCTCATGA

protein sequence of Ggra4596.t1

>Ggra4596.t1 ID=Ggra4596.t1|Name=Ggra4596.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=722bp
MAAAVAYIQFRFRFTIAVFDRSQTIAYQIYQYGFFAFELVTVGAIVFRLV
EIWNVSSRNCVDFRRIPNHMIAPRFSHSPRARVPAQYSNYPSVGVFIPCY
NEEVDLVLETVLGALNIDYPSELLTVYLCDDGKDPLKRNMISQLRKQYKN
VHYVIRPHHAHAKAGNLNYSLQRTTTHLVVTLDADFVARPNLLQRLIPYY
FVWNQQTELYEFNESLAVVQTPQHFRNLSPYDSDPLDQRSTFFAELVLPG
KDWFNSSTMIGTTNLLNREALQKANYYPYHSITEDTAMSLMFHSLGYRTY
YVNESLATGLATNSLWSNLRQRARWLKGDWQILFSSKGPLTARGLSLVQR
FLYMHMTYVRFISVVHLLYDIAAVLLLVGGISPLDSPNPIQFIIYISAFF
LTSLIQRSIVTMGGIGLRKSESGSVAFEAIFRYTTVKGLFIALFRGKNLA
FKVTDKAATKKKKRKNGKDESEKETCDNEEEKRSGEKFEQHARMTMLGRS
GPNEPGHGMVGDNEIEFENIDSVVVEIDSSSPSGETSDQRSAYSTSNEYD
STTTLSADDDGRTYKKFVRAKTAEERAERRREIRKNLKRIWFNVAMAIVL
AFSIVWGIVNPPKQVAGQDGVTVFRNPDIFPMAMALGFAMANLLPHLLAI
YLCFIPYVSGWVMSDLVHGRCDQYAVHPRTGKLFVPWSFIVLLEAAKGVL
ILGSMAFLLVYTLVDERNVGS*

mRNA from alignment at tig00000941_pilon:71671..73836+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4596.t1 ID=Ggra4596.t1|Name=Ggra4596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2166bp|location=Sequence derived from alignment at tig00000941_pilon:71671..73836+ (Gracilaria gracilis GNS1m male)
ATGGCTGCTGCCGTTGCTTACATCCAGTTCCGGTTCCGCTTCACCATTGC
TGTTTTCGATCGCAGCCAGACTATTGCGTACCAAATCTACCAGTACGGCT
TCTTTGCGTTCGAGCTCGTCACCGTGGGCGCCATCGTGTTTCGCTTGGTG
GAGATTTGGAATGTCTCTTCAAGAAACTGCGTCGATTTCAGGAGGATCCC
CAATCATATGATTGCGCCTCGCTTTTCGCACTCGCCGAGAGCCCGAGTTC
CTGCCCAATACTCAAACTACCCTTCGGTGGGCGTGTTTATTCCGTGCTAC
AACGAAGAGGTTGATCTGGTCCTGGAGACTGTGTTGGGCGCCCTTAACAT
CGACTACCCCTCCGAACTACTAACTGTATACCTTTGTGATGACGGCAAGG
ATCCGCTCAAGAGAAATATGATCTCTCAGTTGCGCAAGCAATACAAGAAT
GTACACTATGTAATTCGCCCACATCACGCTCATGCAAAAGCTGGAAATCT
TAACTATTCTCTTCAACGAACTACTACTCACTTGGTTGTAACTCTTGACG
CTGACTTTGTTGCGAGACCTAATCTTTTACAACGACTTATTCCATACTAT
TTTGTGTGGAATCAACAAACAGAGCTGTACGAGTTCAATGAATCTCTTGC
AGTCGTACAAACTCCTCAACATTTTCGAAATCTGTCTCCGTATGACAGTG
ATCCGCTTGATCAACGTTCTACCTTTTTCGCCGAACTTGTGTTACCGGGT
AAGGATTGGTTCAATAGCTCCACAATGATTGGAACCACAAATCTCCTTAA
CCGCGAAGCATTGCAGAAAGCGAATTATTACCCGTATCATTCTATTACCG
AAGATACAGCCATGTCACTCATGTTTCATAGTTTGGGATATCGTACGTAT
TATGTGAACGAATCATTGGCAACTGGACTGGCTACCAACTCATTGTGGAG
CAATTTGCGGCAGAGAGCAAGATGGCTCAAAGGCGATTGGCAGATTCTAT
TTTCCTCAAAAGGACCATTGACGGCGCGTGGTCTTTCTCTCGTGCAGCGC
TTTTTGTACATGCATATGACGTATGTGCGCTTCATATCCGTTGTCCATTT
GCTGTATGATATCGCGGCGGTTTTGTTGCTGGTTGGCGGCATTTCTCCTT
TAGATTCTCCAAATCCGATCCAGTTCATCATCTACATCAGTGCGTTCTTC
CTGACGAGTCTTATTCAGCGGTCGATCGTGACGATGGGCGGAATTGGATT
GCGAAAGTCCGAGTCGGGGTCAGTAGCCTTTGAAGCGATTTTTCGATACA
CAACTGTGAAGGGTTTGTTCATTGCGCTGTTCAGGGGCAAGAATTTGGCG
TTTAAGGTTACTGATAAGGCCGCCACCAAGAAGAAGAAAAGAAAGAATGG
CAAAGATGAGAGCGAAAAAGAGACTTGCGATAATGAAGAGGAGAAGAGAA
GTGGAGAGAAGTTTGAGCAACACGCAAGAATGACAATGCTGGGGCGTTCA
GGCCCGAATGAGCCGGGCCATGGAATGGTTGGAGATAACGAGATTGAATT
TGAAAACATTGACTCGGTGGTGGTTGAGATTGATTCAAGCTCTCCGTCCG
GTGAAACCAGTGATCAACGCAGCGCGTACAGTACGAGCAATGAATACGAC
AGTACAACAACTCTGTCTGCAGATGATGACGGACGCACATACAAGAAGTT
TGTGCGGGCAAAAACGGCCGAGGAACGTGCAGAACGACGGAGAGAGATCC
GAAAGAACTTGAAACGAATCTGGTTCAACGTGGCGATGGCGATTGTACTA
GCGTTTTCCATCGTGTGGGGCATTGTGAACCCACCGAAACAAGTGGCGGG
CCAGGACGGGGTGACGGTGTTCCGGAATCCAGACATTTTCCCCATGGCGA
TGGCGCTGGGGTTCGCCATGGCCAACTTGCTACCACATCTGCTGGCGATT
TACCTGTGCTTCATTCCGTACGTGTCGGGATGGGTGATGTCGGACCTTGT
TCACGGACGGTGTGACCAGTATGCGGTGCACCCGCGAACGGGGAAGTTGT
TCGTGCCGTGGTCGTTCATCGTGCTGCTGGAAGCTGCGAAGGGGGTGTTG
ATTCTGGGGTCGATGGCGTTCCTGCTTGTGTATACCTTGGTTGACGAACG
AAACGTTGGCTCATGA

Coding sequence (CDS) from alignment at tig00000941_pilon:71671..73836+

>Ggra4596.t1 ID=Ggra4596.t1|Name=Ggra4596.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2166bp|location=Sequence derived from alignment at tig00000941_pilon:71671..73836+ (Gracilaria gracilis GNS1m male)
ATGGCTGCTGCCGTTGCTTACATCCAGTTCCGGTTCCGCTTCACCATTGC
TGTTTTCGATCGCAGCCAGACTATTGCGTACCAAATCTACCAGTACGGCT
TCTTTGCGTTCGAGCTCGTCACCGTGGGCGCCATCGTGTTTCGCTTGGTG
GAGATTTGGAATGTCTCTTCAAGAAACTGCGTCGATTTCAGGAGGATCCC
CAATCATATGATTGCGCCTCGCTTTTCGCACTCGCCGAGAGCCCGAGTTC
CTGCCCAATACTCAAACTACCCTTCGGTGGGCGTGTTTATTCCGTGCTAC
AACGAAGAGGTTGATCTGGTCCTGGAGACTGTGTTGGGCGCCCTTAACAT
CGACTACCCCTCCGAACTACTAACTGTATACCTTTGTGATGACGGCAAGG
ATCCGCTCAAGAGAAATATGATCTCTCAGTTGCGCAAGCAATACAAGAAT
GTACACTATGTAATTCGCCCACATCACGCTCATGCAAAAGCTGGAAATCT
TAACTATTCTCTTCAACGAACTACTACTCACTTGGTTGTAACTCTTGACG
CTGACTTTGTTGCGAGACCTAATCTTTTACAACGACTTATTCCATACTAT
TTTGTGTGGAATCAACAAACAGAGCTGTACGAGTTCAATGAATCTCTTGC
AGTCGTACAAACTCCTCAACATTTTCGAAATCTGTCTCCGTATGACAGTG
ATCCGCTTGATCAACGTTCTACCTTTTTCGCCGAACTTGTGTTACCGGGT
AAGGATTGGTTCAATAGCTCCACAATGATTGGAACCACAAATCTCCTTAA
CCGCGAAGCATTGCAGAAAGCGAATTATTACCCGTATCATTCTATTACCG
AAGATACAGCCATGTCACTCATGTTTCATAGTTTGGGATATCGTACGTAT
TATGTGAACGAATCATTGGCAACTGGACTGGCTACCAACTCATTGTGGAG
CAATTTGCGGCAGAGAGCAAGATGGCTCAAAGGCGATTGGCAGATTCTAT
TTTCCTCAAAAGGACCATTGACGGCGCGTGGTCTTTCTCTCGTGCAGCGC
TTTTTGTACATGCATATGACGTATGTGCGCTTCATATCCGTTGTCCATTT
GCTGTATGATATCGCGGCGGTTTTGTTGCTGGTTGGCGGCATTTCTCCTT
TAGATTCTCCAAATCCGATCCAGTTCATCATCTACATCAGTGCGTTCTTC
CTGACGAGTCTTATTCAGCGGTCGATCGTGACGATGGGCGGAATTGGATT
GCGAAAGTCCGAGTCGGGGTCAGTAGCCTTTGAAGCGATTTTTCGATACA
CAACTGTGAAGGGTTTGTTCATTGCGCTGTTCAGGGGCAAGAATTTGGCG
TTTAAGGTTACTGATAAGGCCGCCACCAAGAAGAAGAAAAGAAAGAATGG
CAAAGATGAGAGCGAAAAAGAGACTTGCGATAATGAAGAGGAGAAGAGAA
GTGGAGAGAAGTTTGAGCAACACGCAAGAATGACAATGCTGGGGCGTTCA
GGCCCGAATGAGCCGGGCCATGGAATGGTTGGAGATAACGAGATTGAATT
TGAAAACATTGACTCGGTGGTGGTTGAGATTGATTCAAGCTCTCCGTCCG
GTGAAACCAGTGATCAACGCAGCGCGTACAGTACGAGCAATGAATACGAC
AGTACAACAACTCTGTCTGCAGATGATGACGGACGCACATACAAGAAGTT
TGTGCGGGCAAAAACGGCCGAGGAACGTGCAGAACGACGGAGAGAGATCC
GAAAGAACTTGAAACGAATCTGGTTCAACGTGGCGATGGCGATTGTACTA
GCGTTTTCCATCGTGTGGGGCATTGTGAACCCACCGAAACAAGTGGCGGG
CCAGGACGGGGTGACGGTGTTCCGGAATCCAGACATTTTCCCCATGGCGA
TGGCGCTGGGGTTCGCCATGGCCAACTTGCTACCACATCTGCTGGCGATT
TACCTGTGCTTCATTCCGTACGTGTCGGGATGGGTGATGTCGGACCTTGT
TCACGGACGGTGTGACCAGTATGCGGTGCACCCGCGAACGGGGAAGTTGT
TCGTGCCGTGGTCGTTCATCGTGCTGCTGGAAGCTGCGAAGGGGGTGTTG
ATTCTGGGGTCGATGGCGTTCCTGCTTGTGTATACCTTGGTTGACGAACG
AAACGTTGGCTCATGA