Ggra4594.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4594.t1
Unique NameGgra4594.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:68724..69200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_10970T0
PFAMsSelR
Max annot lvl33154|Opisthokonta
KEGG koko:K07305
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0030091,GO:0033554,GO:0033743,GO:0034599,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1901564,GO:1990748
Evalue2.5e-66
EggNOG OGsCOG0229@1|root,KOG0856@2759|Eukaryota,3A0BN@33154|Opisthokonta
EC1.8.4.12
Descriptionreductase
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4594Ggra4594Gracilaria gracilis GNS1m malegenetig00000941_pilon 68724..69200 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4594.t1.start1Ggra4594.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 68724..68726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4594.t1.CDS1Ggra4594.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 68724..69200 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4594.t1.exon1Ggra4594.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 68724..69200 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4594.t1.stop1Ggra4594.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 69198..69200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4594.t1Ggra4594.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 68724..69200 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4594.t1 ID=Ggra4594.t1|Name=Ggra4594.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=159bp
MSDAGSNAQPAAKMPAGKSVDSMTDADWRSVLSAQEYNVIRKKGTEYPGT
GEYDGFYPKEGHFVCRACGNPIYSAESKFKSGCGWPSFDKCYKDSVKIEK
DVTLGMVRVEIMCNKCDGHLGHVFEGERFTKTNERHCVNSVSVKYVEGAV
DLKEEKVL*
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spliced messenger RNA

>Ggra4594.t1 ID=Ggra4594.t1|Name=Ggra4594.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000941_pilon:68724..69200+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGACGCAGGCTCGAATGCGCAGCCGGCAGCGAAAATGCCGGCTGG
GAAAAGCGTGGATTCGATGACAGATGCGGATTGGCGCTCGGTTCTATCGG
CGCAGGAGTACAACGTGATCCGGAAGAAGGGCACCGAGTATCCGGGCACG
GGGGAGTATGACGGGTTTTATCCGAAGGAGGGTCATTTTGTATGCCGCGC
GTGTGGAAACCCGATTTATTCTGCGGAATCCAAGTTCAAGAGTGGGTGTG
GATGGCCTTCGTTTGACAAGTGCTACAAGGACAGTGTGAAGATTGAAAAA
GATGTGACGTTAGGAATGGTACGTGTGGAAATCATGTGCAACAAGTGCGA
CGGACATCTTGGGCATGTGTTCGAGGGCGAAAGGTTCACCAAAACTAATG
AGCGACACTGCGTGAACAGTGTGAGCGTCAAGTACGTCGAGGGCGCGGTA
GACCTCAAGGAAGAAAAGGTGCTCTGA
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protein sequence of Ggra4594.t1

>Ggra4594.t1 ID=Ggra4594.t1|Name=Ggra4594.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=159bp
MSDAGSNAQPAAKMPAGKSVDSMTDADWRSVLSAQEYNVIRKKGTEYPGT
GEYDGFYPKEGHFVCRACGNPIYSAESKFKSGCGWPSFDKCYKDSVKIEK
DVTLGMVRVEIMCNKCDGHLGHVFEGERFTKTNERHCVNSVSVKYVEGAV
DLKEEKVL*
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mRNA from alignment at tig00000941_pilon:68724..69200+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4594.t1 ID=Ggra4594.t1|Name=Ggra4594.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000941_pilon:68724..69200+ (Gracilaria gracilis GNS1m male)
ATGTCGGACGCAGGCTCGAATGCGCAGCCGGCAGCGAAAATGCCGGCTGG
GAAAAGCGTGGATTCGATGACAGATGCGGATTGGCGCTCGGTTCTATCGG
CGCAGGAGTACAACGTGATCCGGAAGAAGGGCACCGAGTATCCGGGCACG
GGGGAGTATGACGGGTTTTATCCGAAGGAGGGTCATTTTGTATGCCGCGC
GTGTGGAAACCCGATTTATTCTGCGGAATCCAAGTTCAAGAGTGGGTGTG
GATGGCCTTCGTTTGACAAGTGCTACAAGGACAGTGTGAAGATTGAAAAA
GATGTGACGTTAGGAATGGTACGTGTGGAAATCATGTGCAACAAGTGCGA
CGGACATCTTGGGCATGTGTTCGAGGGCGAAAGGTTCACCAAAACTAATG
AGCGACACTGCGTGAACAGTGTGAGCGTCAAGTACGTCGAGGGCGCGGTA
GACCTCAAGGAAGAAAAGGTGCTCTGA
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Coding sequence (CDS) from alignment at tig00000941_pilon:68724..69200+

>Ggra4594.t1 ID=Ggra4594.t1|Name=Ggra4594.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00000941_pilon:68724..69200+ (Gracilaria gracilis GNS1m male)
ATGTCGGACGCAGGCTCGAATGCGCAGCCGGCAGCGAAAATGCCGGCTGG
GAAAAGCGTGGATTCGATGACAGATGCGGATTGGCGCTCGGTTCTATCGG
CGCAGGAGTACAACGTGATCCGGAAGAAGGGCACCGAGTATCCGGGCACG
GGGGAGTATGACGGGTTTTATCCGAAGGAGGGTCATTTTGTATGCCGCGC
GTGTGGAAACCCGATTTATTCTGCGGAATCCAAGTTCAAGAGTGGGTGTG
GATGGCCTTCGTTTGACAAGTGCTACAAGGACAGTGTGAAGATTGAAAAA
GATGTGACGTTAGGAATGGTACGTGTGGAAATCATGTGCAACAAGTGCGA
CGGACATCTTGGGCATGTGTTCGAGGGCGAAAGGTTCACCAAAACTAATG
AGCGACACTGCGTGAACAGTGTGAGCGTCAAGTACGTCGAGGGCGCGGTA
GACCTCAAGGAAGAAAAGGTGCTCTGA
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