Ggra4592.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4592.t1
Unique NameGgra4592.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:62034..63518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008875272.1
PFAMsDUF4203
Max annot lvl2759|Eukaryota
Evalue9.02e-25
EggNOG OGs2CYB4@1|root,2S3B1@2759|Eukaryota
DescriptionDomain of unknown function (DUF4203)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4592Ggra4592Gracilaria gracilis GNS1m malegenetig00000941_pilon 62034..63518 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4592.t1.stop1Ggra4592.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 62034..62036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4592.t1.CDS1Ggra4592.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 62034..63518 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4592.t1.exon1Ggra4592.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 62034..63518 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4592.t1.start1Ggra4592.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 63516..63518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4592.t1Ggra4592.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 62034..63518 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4592.t1 ID=Ggra4592.t1|Name=Ggra4592.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp
MQRIQLTFFLALFTISFALPISQSQLETRDFPIHNHHEHRQLLQLHGLPS
QHALQDMDNIAPAISNATASAIARANSILLHYSDALRIIAIPTGISVSFF
GYFLLAPVLFLAAFVSGGGLCFVAVSSVLHEDTPAAAWISIAAMLLGGAM
LGFIALRALNFGMFAVGAALGVVLASCFKTTLIASAYPADPELAFIVTAS
VAGLIFGLLALCLQKQMLIFSTAYAGSAAATFGVGHFAGHFPTTEDLASA
EAGHINAWLVLYVLLALVIGTAGMMFQFWLSQNKPMPEYAPRDRRRRRRR
VRSSSFDTWSDQEDDWADDVYVETVPLPASRRKMSRGSSRGSVTKQPQVL
LQQVSTSDNPAQVSAHLAQSSWDAAAARHAQDSAQNSFEQPSEEDSRDDS
FVYTASPVSIVDVPNHGTDGGERNHFRPQKIPTMFGQTEPKYIRGLKLPV
DRLADVDAPLEGGELKQDVEDKHPAALVDLSLESDHETVSVKAR*
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spliced messenger RNA

>Ggra4592.t1 ID=Ggra4592.t1|Name=Ggra4592.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000941_pilon:62034..63518- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACGCATTCAACTTACCTTCTTCCTCGCCCTGTTCACGATTTCTTT
TGCGTTACCAATCAGTCAAAGCCAGCTCGAAACGCGGGACTTTCCTATTC
ATAACCATCACGAACATCGACAGTTGTTACAGCTTCATGGTCTACCATCG
CAACATGCTCTGCAGGATATGGACAACATCGCACCTGCTATCTCCAATGC
AACGGCTTCGGCTATTGCAAGAGCGAATAGTATCCTCCTACATTATTCAG
ACGCACTACGCATAATCGCCATACCTACTGGTATATCTGTATCGTTCTTC
GGTTACTTTTTACTCGCACCCGTTCTCTTTCTAGCCGCCTTTGTGTCCGG
TGGTGGCTTATGTTTCGTAGCGGTATCTTCCGTGTTACACGAAGACACCC
CAGCTGCCGCGTGGATATCCATTGCAGCTATGTTACTAGGTGGCGCAATG
TTAGGTTTCATAGCTCTGAGGGCGCTCAACTTTGGAATGTTTGCCGTCGG
TGCTGCGCTTGGCGTCGTTCTTGCGTCATGTTTCAAAACTACTCTCATTG
CGTCTGCTTATCCAGCCGACCCTGAACTGGCCTTCATCGTCACTGCGAGC
GTCGCCGGGCTTATTTTCGGCCTGTTAGCTCTTTGTCTTCAGAAGCAAAT
GCTCATCTTCAGTACTGCGTATGCTGGTAGTGCTGCCGCTACGTTCGGAG
TTGGGCACTTTGCGGGTCACTTTCCCACGACGGAAGATCTTGCGAGTGCG
GAGGCAGGTCATATTAATGCGTGGCTTGTTCTGTACGTTTTACTTGCATT
GGTCATTGGAACCGCGGGCATGATGTTTCAGTTCTGGCTTTCGCAGAACA
AGCCAATGCCAGAGTATGCCCCTCGGGACCGACGACGGAGAAGACGACGT
GTTCGGTCAAGTTCGTTTGATACTTGGTCGGACCAAGAGGATGATTGGGC
CGACGATGTTTATGTTGAGACGGTTCCACTCCCTGCGTCACGTCGAAAAA
TGTCTAGAGGGTCTTCTCGAGGATCGGTAACGAAACAGCCACAAGTTCTT
CTACAACAAGTGTCTACGTCAGACAATCCTGCCCAAGTATCGGCTCACCT
TGCACAGAGTTCATGGGATGCTGCCGCTGCACGTCATGCCCAAGACAGCG
CACAGAACTCTTTTGAACAACCTTCTGAAGAAGATTCGCGTGACGATTCA
TTCGTGTACACGGCATCGCCAGTAAGTATTGTTGATGTTCCAAATCATGG
TACGGATGGCGGTGAGCGAAATCATTTTCGGCCGCAAAAGATTCCAACTA
TGTTTGGTCAGACTGAACCCAAGTACATTCGAGGTCTTAAACTTCCTGTC
GACCGGCTGGCAGATGTCGATGCTCCGCTGGAAGGTGGAGAGCTTAAACA
AGACGTGGAAGATAAGCATCCGGCTGCCTTGGTTGACTTATCACTTGAAA
GCGACCATGAAACCGTCTCTGTTAAGGCACGCTAG
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protein sequence of Ggra4592.t1

>Ggra4592.t1 ID=Ggra4592.t1|Name=Ggra4592.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=495bp
MQRIQLTFFLALFTISFALPISQSQLETRDFPIHNHHEHRQLLQLHGLPS
QHALQDMDNIAPAISNATASAIARANSILLHYSDALRIIAIPTGISVSFF
GYFLLAPVLFLAAFVSGGGLCFVAVSSVLHEDTPAAAWISIAAMLLGGAM
LGFIALRALNFGMFAVGAALGVVLASCFKTTLIASAYPADPELAFIVTAS
VAGLIFGLLALCLQKQMLIFSTAYAGSAAATFGVGHFAGHFPTTEDLASA
EAGHINAWLVLYVLLALVIGTAGMMFQFWLSQNKPMPEYAPRDRRRRRRR
VRSSSFDTWSDQEDDWADDVYVETVPLPASRRKMSRGSSRGSVTKQPQVL
LQQVSTSDNPAQVSAHLAQSSWDAAAARHAQDSAQNSFEQPSEEDSRDDS
FVYTASPVSIVDVPNHGTDGGERNHFRPQKIPTMFGQTEPKYIRGLKLPV
DRLADVDAPLEGGELKQDVEDKHPAALVDLSLESDHETVSVKAR*
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mRNA from alignment at tig00000941_pilon:62034..63518-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4592.t1 ID=Ggra4592.t1|Name=Ggra4592.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000941_pilon:62034..63518- (Gracilaria gracilis GNS1m male)
ATGCAACGCATTCAACTTACCTTCTTCCTCGCCCTGTTCACGATTTCTTT
TGCGTTACCAATCAGTCAAAGCCAGCTCGAAACGCGGGACTTTCCTATTC
ATAACCATCACGAACATCGACAGTTGTTACAGCTTCATGGTCTACCATCG
CAACATGCTCTGCAGGATATGGACAACATCGCACCTGCTATCTCCAATGC
AACGGCTTCGGCTATTGCAAGAGCGAATAGTATCCTCCTACATTATTCAG
ACGCACTACGCATAATCGCCATACCTACTGGTATATCTGTATCGTTCTTC
GGTTACTTTTTACTCGCACCCGTTCTCTTTCTAGCCGCCTTTGTGTCCGG
TGGTGGCTTATGTTTCGTAGCGGTATCTTCCGTGTTACACGAAGACACCC
CAGCTGCCGCGTGGATATCCATTGCAGCTATGTTACTAGGTGGCGCAATG
TTAGGTTTCATAGCTCTGAGGGCGCTCAACTTTGGAATGTTTGCCGTCGG
TGCTGCGCTTGGCGTCGTTCTTGCGTCATGTTTCAAAACTACTCTCATTG
CGTCTGCTTATCCAGCCGACCCTGAACTGGCCTTCATCGTCACTGCGAGC
GTCGCCGGGCTTATTTTCGGCCTGTTAGCTCTTTGTCTTCAGAAGCAAAT
GCTCATCTTCAGTACTGCGTATGCTGGTAGTGCTGCCGCTACGTTCGGAG
TTGGGCACTTTGCGGGTCACTTTCCCACGACGGAAGATCTTGCGAGTGCG
GAGGCAGGTCATATTAATGCGTGGCTTGTTCTGTACGTTTTACTTGCATT
GGTCATTGGAACCGCGGGCATGATGTTTCAGTTCTGGCTTTCGCAGAACA
AGCCAATGCCAGAGTATGCCCCTCGGGACCGACGACGGAGAAGACGACGT
GTTCGGTCAAGTTCGTTTGATACTTGGTCGGACCAAGAGGATGATTGGGC
CGACGATGTTTATGTTGAGACGGTTCCACTCCCTGCGTCACGTCGAAAAA
TGTCTAGAGGGTCTTCTCGAGGATCGGTAACGAAACAGCCACAAGTTCTT
CTACAACAAGTGTCTACGTCAGACAATCCTGCCCAAGTATCGGCTCACCT
TGCACAGAGTTCATGGGATGCTGCCGCTGCACGTCATGCCCAAGACAGCG
CACAGAACTCTTTTGAACAACCTTCTGAAGAAGATTCGCGTGACGATTCA
TTCGTGTACACGGCATCGCCAGTAAGTATTGTTGATGTTCCAAATCATGG
TACGGATGGCGGTGAGCGAAATCATTTTCGGCCGCAAAAGATTCCAACTA
TGTTTGGTCAGACTGAACCCAAGTACATTCGAGGTCTTAAACTTCCTGTC
GACCGGCTGGCAGATGTCGATGCTCCGCTGGAAGGTGGAGAGCTTAAACA
AGACGTGGAAGATAAGCATCCGGCTGCCTTGGTTGACTTATCACTTGAAA
GCGACCATGAAACCGTCTCTGTTAAGGCACGCTAG
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Coding sequence (CDS) from alignment at tig00000941_pilon:62034..63518-

>Ggra4592.t1 ID=Ggra4592.t1|Name=Ggra4592.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1485bp|location=Sequence derived from alignment at tig00000941_pilon:62034..63518- (Gracilaria gracilis GNS1m male)
ATGCAACGCATTCAACTTACCTTCTTCCTCGCCCTGTTCACGATTTCTTT
TGCGTTACCAATCAGTCAAAGCCAGCTCGAAACGCGGGACTTTCCTATTC
ATAACCATCACGAACATCGACAGTTGTTACAGCTTCATGGTCTACCATCG
CAACATGCTCTGCAGGATATGGACAACATCGCACCTGCTATCTCCAATGC
AACGGCTTCGGCTATTGCAAGAGCGAATAGTATCCTCCTACATTATTCAG
ACGCACTACGCATAATCGCCATACCTACTGGTATATCTGTATCGTTCTTC
GGTTACTTTTTACTCGCACCCGTTCTCTTTCTAGCCGCCTTTGTGTCCGG
TGGTGGCTTATGTTTCGTAGCGGTATCTTCCGTGTTACACGAAGACACCC
CAGCTGCCGCGTGGATATCCATTGCAGCTATGTTACTAGGTGGCGCAATG
TTAGGTTTCATAGCTCTGAGGGCGCTCAACTTTGGAATGTTTGCCGTCGG
TGCTGCGCTTGGCGTCGTTCTTGCGTCATGTTTCAAAACTACTCTCATTG
CGTCTGCTTATCCAGCCGACCCTGAACTGGCCTTCATCGTCACTGCGAGC
GTCGCCGGGCTTATTTTCGGCCTGTTAGCTCTTTGTCTTCAGAAGCAAAT
GCTCATCTTCAGTACTGCGTATGCTGGTAGTGCTGCCGCTACGTTCGGAG
TTGGGCACTTTGCGGGTCACTTTCCCACGACGGAAGATCTTGCGAGTGCG
GAGGCAGGTCATATTAATGCGTGGCTTGTTCTGTACGTTTTACTTGCATT
GGTCATTGGAACCGCGGGCATGATGTTTCAGTTCTGGCTTTCGCAGAACA
AGCCAATGCCAGAGTATGCCCCTCGGGACCGACGACGGAGAAGACGACGT
GTTCGGTCAAGTTCGTTTGATACTTGGTCGGACCAAGAGGATGATTGGGC
CGACGATGTTTATGTTGAGACGGTTCCACTCCCTGCGTCACGTCGAAAAA
TGTCTAGAGGGTCTTCTCGAGGATCGGTAACGAAACAGCCACAAGTTCTT
CTACAACAAGTGTCTACGTCAGACAATCCTGCCCAAGTATCGGCTCACCT
TGCACAGAGTTCATGGGATGCTGCCGCTGCACGTCATGCCCAAGACAGCG
CACAGAACTCTTTTGAACAACCTTCTGAAGAAGATTCGCGTGACGATTCA
TTCGTGTACACGGCATCGCCAGTAAGTATTGTTGATGTTCCAAATCATGG
TACGGATGGCGGTGAGCGAAATCATTTTCGGCCGCAAAAGATTCCAACTA
TGTTTGGTCAGACTGAACCCAAGTACATTCGAGGTCTTAAACTTCCTGTC
GACCGGCTGGCAGATGTCGATGCTCCGCTGGAAGGTGGAGAGCTTAAACA
AGACGTGGAAGATAAGCATCCGGCTGCCTTGGTTGACTTATCACTTGAAA
GCGACCATGAAACCGTCTCTGTTAAGGCACGCTAG
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