Ggra4590.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4590.t1
Unique Name	Ggra4590.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000941_pilon	contig	tig00000941_pilon:52616..53713 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706429.1
Preferred name	PHR2
PFAMs	DNA_photolyase,FAD_binding_7
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01669
Evalue	2.43e-108
EggNOG OGs	COG0415@1\|root,KOG0133@2759\|Eukaryota
EC	4.1.99.3
Description	DNA photolyase activity
COG category	L
BRITE	ko00000,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4590	Ggra4590	Gracilaria gracilis GNS1m male	gene	tig00000941_pilon 52616..53713 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4590.t1.start1	Ggra4590.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000941_pilon 52616..52618 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4590.t1.CDS1	Ggra4590.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000941_pilon 52616..53713 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4590.t1.exon1	Ggra4590.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000941_pilon 52616..53713 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4590.t1.stop1	Ggra4590.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000941_pilon 53711..53713 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4590.t1	Ggra4590.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000941_pilon 52616..53713 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000941_pilon:52616..53713+
coding sequence from alignment at tig00000941_pilon:52616..53713+

mRNA sequence

>Ggra4590.t1 ID=Ggra4590.t1|Name=Ggra4590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp
MAAVAAAPNVSTRLVPLRHSAGFFDDGALGKGLDKVVVLFRSDLRLDDHP
ALSYALEDAKDVVPVYCFDPRHFGKTDYGFQKTGKYRARFLIESVDDLRK
SLRAKGSDLIVRVGRPEQVVPELCRSINCRHVFAHKEVTHDEQQVEVALE
EALKKNGAELSTFWANTLYHEDDLPFPIQSIPDVYSDFREAVQKSGTIRT
PLPTPDSFPSLPNGVKPGDVPTLRQLGIEDSPLASKSESCKTSTAGISSV
TGGETEAMLRVQAYVDESKRFDAALSPRAQVTSHLGADFSCRISPWLALG
CISPRRIFDEMKKASPRPHTLVTSTTYFELVWRDFFRYITAKYSGKRNAA
AARSGNMSQRVAVRT*

spliced messenger RNA

>Ggra4590.t1 ID=Ggra4590.t1|Name=Ggra4590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000941_pilon:52616..53713+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggctgccgttgccgctgcGCCTAATGTGTCCACCCGACTTGTGCCGTT
GCGTCATTCCGCAGGGTTTTTCGACGATGGAGCGTTGGGCAAAGGCTTGG
ATAAGGTGGTGGTGCTGTTCCGTTCCGATTTAAGACTTGATGATCACCCG
GCTTTGTCTTATGCCTTGGAGGATGCCAAAGATGTCGTGCCCGTATATTG
TTTCGATCCTAGGCATTTTGGAAAGACTGATTATGGTTTCCAGAAGACTG
GCAAGTACAGGGCGCGCTTTTTAATTGAGAGTGTCGACGACTTGAGAAAG
TCTTTGCGTGCCAAGGGCAGTGACCTCATCGTGCGAGTTGGACGCCCGGA
ACAGGTCGTGCCAGAGTTGTGTCGCTCCATCAACTGCCGTCATGTGTTTG
CACACAAGGAGGTTACTCATGATGAGCAGCAGGTCGAGGTTGCCTTGGAA
GAAGCCCTCAAGAAGAATGGCGCCGAGCTGTCCACCTTCTGGGCCAATAC
CCTATACCATGAGGATGACCTTCCTTTCCCGATTCAGAGCATCCCTGACG
TATACTCTGACTTCCGTGAGGCTGTTCAGAAGTCGGGTACCATTCGTACT
CCGTTACCTACACCTGACTCTTTCCCGTCTCTTCCCAATGGTGTCAAACC
AGGAGATGTCCCCACCCTTCGCCAACTTGGTATTGAAGATTCTCCACTTG
CATCCAAATCTGAGTCTTGCAAGACGTCAACCGCGGGTATTTCCTCTGTG
ACCGGAGGGGAGACTGAGGCTATGTTGCGTGTCCAAGCGTATGTGGACGA
GAGTAAGCGTTTTGATGCTGCCTTATCCCCTAGAGCACAGGTTACTTCTC
ACCTTGGAGCTGACTTCTCGTGTCGTATCTCACCATGGCTGGCACTTGGA
TGCATCTCACCAAGAAGGATCTTCGATGAGATGAAGAAGGCGTCACCGAG
ACCACATACGCTTGTCACCTCTACAACGTACTTTGAACTCGTGTGGCGTG
ATTTCTTTAGATATATTACGGCCAAGTATTCTGGTAAGAGAAATGCTGCT
GCGGCGCGGAGTGGTAATATGTCTCAGCGGGTTGCCGTGCGTACTTAG

protein sequence of Ggra4590.t1

>Ggra4590.t1 ID=Ggra4590.t1|Name=Ggra4590.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MAAVAAAPNVSTRLVPLRHSAGFFDDGALGKGLDKVVVLFRSDLRLDDHP
ALSYALEDAKDVVPVYCFDPRHFGKTDYGFQKTGKYRARFLIESVDDLRK
SLRAKGSDLIVRVGRPEQVVPELCRSINCRHVFAHKEVTHDEQQVEVALE
EALKKNGAELSTFWANTLYHEDDLPFPIQSIPDVYSDFREAVQKSGTIRT
PLPTPDSFPSLPNGVKPGDVPTLRQLGIEDSPLASKSESCKTSTAGISSV
TGGETEAMLRVQAYVDESKRFDAALSPRAQVTSHLGADFSCRISPWLALG
CISPRRIFDEMKKASPRPHTLVTSTTYFELVWRDFFRYITAKYSGKRNAA
AARSGNMSQRVAVRT*

mRNA from alignment at tig00000941_pilon:52616..53713+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4590.t1 ID=Ggra4590.t1|Name=Ggra4590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000941_pilon:52616..53713+ (Gracilaria gracilis GNS1m male)
atggctgccgttgccgctgcGCCTAATGTGTCCACCCGACTTGTGCCGTT
GCGTCATTCCGCAGGGTTTTTCGACGATGGAGCGTTGGGCAAAGGCTTGG
ATAAGGTGGTGGTGCTGTTCCGTTCCGATTTAAGACTTGATGATCACCCG
GCTTTGTCTTATGCCTTGGAGGATGCCAAAGATGTCGTGCCCGTATATTG
TTTCGATCCTAGGCATTTTGGAAAGACTGATTATGGTTTCCAGAAGACTG
GCAAGTACAGGGCGCGCTTTTTAATTGAGAGTGTCGACGACTTGAGAAAG
TCTTTGCGTGCCAAGGGCAGTGACCTCATCGTGCGAGTTGGACGCCCGGA
ACAGGTCGTGCCAGAGTTGTGTCGCTCCATCAACTGCCGTCATGTGTTTG
CACACAAGGAGGTTACTCATGATGAGCAGCAGGTCGAGGTTGCCTTGGAA
GAAGCCCTCAAGAAGAATGGCGCCGAGCTGTCCACCTTCTGGGCCAATAC
CCTATACCATGAGGATGACCTTCCTTTCCCGATTCAGAGCATCCCTGACG
TATACTCTGACTTCCGTGAGGCTGTTCAGAAGTCGGGTACCATTCGTACT
CCGTTACCTACACCTGACTCTTTCCCGTCTCTTCCCAATGGTGTCAAACC
AGGAGATGTCCCCACCCTTCGCCAACTTGGTATTGAAGATTCTCCACTTG
CATCCAAATCTGAGTCTTGCAAGACGTCAACCGCGGGTATTTCCTCTGTG
ACCGGAGGGGAGACTGAGGCTATGTTGCGTGTCCAAGCGTATGTGGACGA
GAGTAAGCGTTTTGATGCTGCCTTATCCCCTAGAGCACAGGTTACTTCTC
ACCTTGGAGCTGACTTCTCGTGTCGTATCTCACCATGGCTGGCACTTGGA
TGCATCTCACCAAGAAGGATCTTCGATGAGATGAAGAAGGCGTCACCGAG
ACCACATACGCTTGTCACCTCTACAACGTACTTTGAACTCGTGTGGCGTG
ATTTCTTTAGATATATTACGGCCAAGTATTCTGGTAAGAGAAATGCTGCT
GCGGCGCGGAGTGGTAATATGTCTCAGCGGGTTGCCGTGCGTACTTAG

Coding sequence (CDS) from alignment at tig00000941_pilon:52616..53713+

>Ggra4590.t1 ID=Ggra4590.t1|Name=Ggra4590.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00000941_pilon:52616..53713+ (Gracilaria gracilis GNS1m male)
atggctgccgttgccgctgcGCCTAATGTGTCCACCCGACTTGTGCCGTT
GCGTCATTCCGCAGGGTTTTTCGACGATGGAGCGTTGGGCAAAGGCTTGG
ATAAGGTGGTGGTGCTGTTCCGTTCCGATTTAAGACTTGATGATCACCCG
GCTTTGTCTTATGCCTTGGAGGATGCCAAAGATGTCGTGCCCGTATATTG
TTTCGATCCTAGGCATTTTGGAAAGACTGATTATGGTTTCCAGAAGACTG
GCAAGTACAGGGCGCGCTTTTTAATTGAGAGTGTCGACGACTTGAGAAAG
TCTTTGCGTGCCAAGGGCAGTGACCTCATCGTGCGAGTTGGACGCCCGGA
ACAGGTCGTGCCAGAGTTGTGTCGCTCCATCAACTGCCGTCATGTGTTTG
CACACAAGGAGGTTACTCATGATGAGCAGCAGGTCGAGGTTGCCTTGGAA
GAAGCCCTCAAGAAGAATGGCGCCGAGCTGTCCACCTTCTGGGCCAATAC
CCTATACCATGAGGATGACCTTCCTTTCCCGATTCAGAGCATCCCTGACG
TATACTCTGACTTCCGTGAGGCTGTTCAGAAGTCGGGTACCATTCGTACT
CCGTTACCTACACCTGACTCTTTCCCGTCTCTTCCCAATGGTGTCAAACC
AGGAGATGTCCCCACCCTTCGCCAACTTGGTATTGAAGATTCTCCACTTG
CATCCAAATCTGAGTCTTGCAAGACGTCAACCGCGGGTATTTCCTCTGTG
ACCGGAGGGGAGACTGAGGCTATGTTGCGTGTCCAAGCGTATGTGGACGA
GAGTAAGCGTTTTGATGCTGCCTTATCCCCTAGAGCACAGGTTACTTCTC
ACCTTGGAGCTGACTTCTCGTGTCGTATCTCACCATGGCTGGCACTTGGA
TGCATCTCACCAAGAAGGATCTTCGATGAGATGAAGAAGGCGTCACCGAG
ACCACATACGCTTGTCACCTCTACAACGTACTTTGAACTCGTGTGGCGTG
ATTTCTTTAGATATATTACGGCCAAGTATTCTGGTAAGAGAAATGCTGCT
GCGGCGCGGAGTGGTAATATGTCTCAGCGGGTTGCCGTGCGTACTTAG