Ggra459.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra459.t1
Unique Name	Ggra459.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	384

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000242_pilon	contig	tig00000242_pilon:53291..54442 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708274.1
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00037,RC00039
KEGG ko	ko:K13699
KEGG Reaction	R09381
KEGG Pathway	ko04923,map04923
Evalue	2.76e-52
EggNOG OGs	COG0596@1\|root,KOG4409@2759\|Eukaryota
EC	2.3.1.51
Description	1-acylglycerol-3-phosphate O-acyltransferase activity
COG category	EH
BRITE	ko00000,ko00001,ko01000,ko01002,ko01004

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra459	Ggra459	Gracilaria gracilis GNS1m male	gene	tig00000242_pilon 53291..54442 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra459.t1.start1	Ggra459.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000242_pilon 53291..53293 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra459.t1.CDS1	Ggra459.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000242_pilon 53291..54442 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra459.t1.exon1	Ggra459.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000242_pilon 53291..54442 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra459.t1.stop1	Ggra459.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000242_pilon 54440..54442 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra459.t1	Ggra459.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000242_pilon 53291..54442 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000242_pilon:53291..54442+
coding sequence from alignment at tig00000242_pilon:53291..54442+

mRNA sequence

>Ggra459.t1 ID=Ggra459.t1|Name=Ggra459.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=384bp
MRFLLSLAVRLMRMAGEALFFFELNRFFGRVVSGTVAHRTRCMRHAERAL
LRHVAVRKRTVRVKLPCGVHIHTIVAGMAADDAQRHGQRPLVLLHGHSMA
AASFFRNIDHFLHMGFTSVFVPDLPGWGSSSRPRFDGTHVTHALDFFLRP
FHQWLAQLGVARFTLLGHSLGAYLAYEYAVLHPLRVSSLLLTSPAAIARR
TPVSLALWFSFTPQRFLTQGGLIAQLLFACKYPSSRAYNLPGFRHFTLCS
NSTAHHSGDAAAAKMLCTRRVAPLCWSSECVRPLLENVRRLKCAVHLITG
DHDCLVQVAHVRALYAQLSAAGNVATLEVIHGADHSPHICAPKQFAKAVM
RSLSRTTSYDFTSHHHRVSVPQAHLVSPPPCPS*

spliced messenger RNA

>Ggra459.t1 ID=Ggra459.t1|Name=Ggra459.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00000242_pilon:53291..54442+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCCTGCTGTCGCTCGCCGTGCGGCTGATGCGCATGGCCGGCGA
GGCGCTGTTCTTCTTCGAGCTCAACCGCTTCTTCGGGCGCGTTGTGAgcg
gcaccgtcgcgcaccgcacgcgctgcatgcgccacgcggagcgcgccttg
ctgcgccatgtggccgtgcgcaagcgcaccgtgcgcGTCAAGCTGCCGTG
CGGCGTGCACATCCACACCATCGTGGCGGGCATGGCCGCCGACGACGCGC
AGCGCCACGGCCAGAGGCCGCTCGTGCTGCTGCACGGTCATAGCATGGCC
GCCGCTTCCTTCTTCCGCAACATCGACCACTTTCTGCACATGGGATTCAC
CTCCGTGTTCGTCCCGGACTTGCCGGGCTGGGGCTCTTCGTCGCGTCCGC
GCTTTGATGGCACCCACGTCACCCATGCGCTGGACTTCTTTCTGCGCCCG
TTTCATCAGTGGCTGGCTCAGCTTGGTGTCGCCCGCTTCACGCTGCTTGG
CCATTCGTTGGGCGCGTATCTTGCGTATGAATACGCCGTGCTTCATCCGT
TGCGAGTGTCATCGCTCTTGCTTACGTCGCCTGCCGCCATCGCGCGGCGC
ACGCCTGTCTCGCTGGCGCTGTGGTTTTCCTTCACGCCGCAGCGCTTTCT
CACGCAGGGCGGTTTGATTGCGCAGCTGCTGTTCGCCTGCAAGTACCCTT
CGTCGCGCGCGTACAACCTGCCTGGCTTCCGTCACTTCACGCTGTGCAGC
AACTCCACGGCGCACCACAGCGGCGACGCCGCCGCCGCCAAGATGCTGTG
CACGCGCCGCGTCGCGCCGCTTTGCTGGAGCTCCGAGTGTGTGAGGCCGC
TGTTGGAGAACGTGCGTCGCTTGAAGTGCGCCGTGCATCTCATCACGGGC
GACCATGATTGTCTGGTGCAAGTGGCTCATGTGCGCGCGCTGTACGCGCA
ACTCAGCGCTGCTGGTAACGTTGCTACGTTGGAGGTCATCCACGGCGCCG
ATCATTCGCCGCATATCTGCGCGCCAAAGCAGTTCGCAAAGGCCGTCATG
AGGAGCCTTTCGCGCACCACGTCGTATGACTTTACCTCACATCATCATCG
CGTTTCTGTTCCTCAAGCGCACCTCGTTTCGCCTCCTCCGTGCCCGTCAT
AG

protein sequence of Ggra459.t1

>Ggra459.t1 ID=Ggra459.t1|Name=Ggra459.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=384bp
MRFLLSLAVRLMRMAGEALFFFELNRFFGRVVSGTVAHRTRCMRHAERAL
LRHVAVRKRTVRVKLPCGVHIHTIVAGMAADDAQRHGQRPLVLLHGHSMA
AASFFRNIDHFLHMGFTSVFVPDLPGWGSSSRPRFDGTHVTHALDFFLRP
FHQWLAQLGVARFTLLGHSLGAYLAYEYAVLHPLRVSSLLLTSPAAIARR
TPVSLALWFSFTPQRFLTQGGLIAQLLFACKYPSSRAYNLPGFRHFTLCS
NSTAHHSGDAAAAKMLCTRRVAPLCWSSECVRPLLENVRRLKCAVHLITG
DHDCLVQVAHVRALYAQLSAAGNVATLEVIHGADHSPHICAPKQFAKAVM
RSLSRTTSYDFTSHHHRVSVPQAHLVSPPPCPS*

mRNA from alignment at tig00000242_pilon:53291..54442+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra459.t1 ID=Ggra459.t1|Name=Ggra459.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00000242_pilon:53291..54442+ (Gracilaria gracilis GNS1m male)
ATGCGCTTCCTGCTGTCGCTCGCCGTGCGGCTGATGCGCATGGCCGGCGA
GGCGCTGTTCTTCTTCGAGCTCAACCGCTTCTTCGGGCGCGTTGTGAgcg
gcaccgtcgcgcaccgcacgcgctgcatgcgccacgcggagcgcgccttg
ctgcgccatgtggccgtgcgcaagcgcaccgtgcgcGTCAAGCTGCCGTG
CGGCGTGCACATCCACACCATCGTGGCGGGCATGGCCGCCGACGACGCGC
AGCGCCACGGCCAGAGGCCGCTCGTGCTGCTGCACGGTCATAGCATGGCC
GCCGCTTCCTTCTTCCGCAACATCGACCACTTTCTGCACATGGGATTCAC
CTCCGTGTTCGTCCCGGACTTGCCGGGCTGGGGCTCTTCGTCGCGTCCGC
GCTTTGATGGCACCCACGTCACCCATGCGCTGGACTTCTTTCTGCGCCCG
TTTCATCAGTGGCTGGCTCAGCTTGGTGTCGCCCGCTTCACGCTGCTTGG
CCATTCGTTGGGCGCGTATCTTGCGTATGAATACGCCGTGCTTCATCCGT
TGCGAGTGTCATCGCTCTTGCTTACGTCGCCTGCCGCCATCGCGCGGCGC
ACGCCTGTCTCGCTGGCGCTGTGGTTTTCCTTCACGCCGCAGCGCTTTCT
CACGCAGGGCGGTTTGATTGCGCAGCTGCTGTTCGCCTGCAAGTACCCTT
CGTCGCGCGCGTACAACCTGCCTGGCTTCCGTCACTTCACGCTGTGCAGC
AACTCCACGGCGCACCACAGCGGCGACGCCGCCGCCGCCAAGATGCTGTG
CACGCGCCGCGTCGCGCCGCTTTGCTGGAGCTCCGAGTGTGTGAGGCCGC
TGTTGGAGAACGTGCGTCGCTTGAAGTGCGCCGTGCATCTCATCACGGGC
GACCATGATTGTCTGGTGCAAGTGGCTCATGTGCGCGCGCTGTACGCGCA
ACTCAGCGCTGCTGGTAACGTTGCTACGTTGGAGGTCATCCACGGCGCCG
ATCATTCGCCGCATATCTGCGCGCCAAAGCAGTTCGCAAAGGCCGTCATG
AGGAGCCTTTCGCGCACCACGTCGTATGACTTTACCTCACATCATCATCG
CGTTTCTGTTCCTCAAGCGCACCTCGTTTCGCCTCCTCCGTGCCCGTCAT
AG

Coding sequence (CDS) from alignment at tig00000242_pilon:53291..54442+

>Ggra459.t1 ID=Ggra459.t1|Name=Ggra459.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1152bp|location=Sequence derived from alignment at tig00000242_pilon:53291..54442+ (Gracilaria gracilis GNS1m male)
ATGCGCTTCCTGCTGTCGCTCGCCGTGCGGCTGATGCGCATGGCCGGCGA
GGCGCTGTTCTTCTTCGAGCTCAACCGCTTCTTCGGGCGCGTTGTGAgcg
gcaccgtcgcgcaccgcacgcgctgcatgcgccacgcggagcgcgccttg
ctgcgccatgtggccgtgcgcaagcgcaccgtgcgcGTCAAGCTGCCGTG
CGGCGTGCACATCCACACCATCGTGGCGGGCATGGCCGCCGACGACGCGC
AGCGCCACGGCCAGAGGCCGCTCGTGCTGCTGCACGGTCATAGCATGGCC
GCCGCTTCCTTCTTCCGCAACATCGACCACTTTCTGCACATGGGATTCAC
CTCCGTGTTCGTCCCGGACTTGCCGGGCTGGGGCTCTTCGTCGCGTCCGC
GCTTTGATGGCACCCACGTCACCCATGCGCTGGACTTCTTTCTGCGCCCG
TTTCATCAGTGGCTGGCTCAGCTTGGTGTCGCCCGCTTCACGCTGCTTGG
CCATTCGTTGGGCGCGTATCTTGCGTATGAATACGCCGTGCTTCATCCGT
TGCGAGTGTCATCGCTCTTGCTTACGTCGCCTGCCGCCATCGCGCGGCGC
ACGCCTGTCTCGCTGGCGCTGTGGTTTTCCTTCACGCCGCAGCGCTTTCT
CACGCAGGGCGGTTTGATTGCGCAGCTGCTGTTCGCCTGCAAGTACCCTT
CGTCGCGCGCGTACAACCTGCCTGGCTTCCGTCACTTCACGCTGTGCAGC
AACTCCACGGCGCACCACAGCGGCGACGCCGCCGCCGCCAAGATGCTGTG
CACGCGCCGCGTCGCGCCGCTTTGCTGGAGCTCCGAGTGTGTGAGGCCGC
TGTTGGAGAACGTGCGTCGCTTGAAGTGCGCCGTGCATCTCATCACGGGC
GACCATGATTGTCTGGTGCAAGTGGCTCATGTGCGCGCGCTGTACGCGCA
ACTCAGCGCTGCTGGTAACGTTGCTACGTTGGAGGTCATCCACGGCGCCG
ATCATTCGCCGCATATCTGCGCGCCAAAGCAGTTCGCAAAGGCCGTCATG
AGGAGCCTTTCGCGCACCACGTCGTATGACTTTACCTCACATCATCATCG
CGTTTCTGTTCCTCAAGCGCACCTCGTTTCGCCTCCTCCGTGCCCGTCAT
AG