Ggra4582.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4582.t1
Unique NameGgra4582.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:40638..41816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5741.EDO78615
PFAMsChloroa_b-bind,UPF0066
Max annot lvl2759|Eukaryota
Evalue1.32e-25
EggNOG OGsCOG1720@1|root,KOG2942@2759|Eukaryota
DescriptiontRNA (adenine-N6-)-methyltransferase activity
COG categoryV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4582Ggra4582Gracilaria gracilis GNS1m malegenetig00000941_pilon 40638..41816 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4582.t1.stop1Ggra4582.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 40638..40640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4582.t1.CDS1Ggra4582.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 40638..41816 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4582.t1.exon1Ggra4582.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 40638..41816 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4582.t1.start1Ggra4582.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 41814..41816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4582.t1Ggra4582.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 40638..41816 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4582.t1 ID=Ggra4582.t1|Name=Ggra4582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MEPTSRDEAVARLHRYQEQDLKELYRQLEHLNREIEATELKVANYNNLLS
AARGVVGMRGGVVDYKASEARRRKSRTPKQRLWIKGDASTVFHEPQTLPL
PKHFLAPSGMVYTTFQKRFEAPRQSFTGSTARATIVLTKAASSEDDRSRR
CRLFTRLKTGQRLWLIYWFDRNASHWRQLVRPPRAKGGFRVGLFATRSPN
RPTPIGLSLSVVESFDASLGEIHVSGVDVLDETPLIALKEYDERSEACFG
TRSGWLEDCDRLQPLYYDPVTDESRMSSFSLQFGDRVSERIDFVNQRSAV
DIKSLVRESLRRIPNTLNLDEVNDVKRRTGSLPVGSYRVNYEIEPRTSTI
CVTEVVSGMRREVCEAEAASDPEARLHLEFQALYHDEMIHLN*
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spliced messenger RNA

>Ggra4582.t1 ID=Ggra4582.t1|Name=Ggra4582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000941_pilon:40638..41816- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCCACCTCTCGTGATGAAGCGGTCGCCCGACTTCATCGATACCA
AGAACAGGATCTAAAGGAGCTGTACCGGCAGCTAGAGCATCTCAATCGCG
AAATAGAAGCCACTGAACTCAAGGTTGCAAACTACAACAACCTATTAAGT
GCCGCAAGGGGTGTGGTTGGGATGCGTGGCGGCGTGGTTGATTACAAAGC
CAGTGAGGCCCGAAGGCGAAAGTCAAGAACACCCAAGCAGCGACTTTGGA
TAAAAGGGGATGCCTCCACCGTTTTTCACGAGCCACAAACATTACCCCTT
CCTAAACACTTTCTTGCCCCGAGTGGAATGGTCTACACCACATTTCAGAA
ACGATTCGAAGCTCCCAGGCAAAGTTTTACTGGAAGTACAGCACGTGCGA
CCATTGTCCTGACCAAAGCAGCCAGTAGCGAAGATGACCGATCGAGAAGG
TGCCGTCTGTTCACTCGTTTAAAAACAGGACAAAGGTTATGGCTTATTTA
CTGGTTTGATCGAAATGCATCTCATTGGCGTCAACTTGTCAGACCTCCGC
GAGCAAAAGGGGGGTTTCGAGTGGGTCTCTTCGCCACCAGATCCCCGAAT
CGGCCAACGCCGATTGGTTTGTCACTGAGCGTTGTTGAAAGTTTTGACGC
ATCTCTGGGAGAAATTCATGTGAGCGGTGTAGATGTTTTGGACGAGACTC
CGCTAATTGCGTTGAAAGAGTATGACGAACGGAGCGAAGCTTGTTTTGGC
ACTCGATCTGGATGGCTGGAGGACTGTGATCGATTGCAACCATTGTACTA
TGATCCTGTGACTGACGAAAGCCGGATGTCATCATTCTCGCTGCAATTTG
GCGACCGAGTGTCAGAGAGAATAGACTTTGTTAATCAAAGGAGTGCAGTC
GATATTAAGTCCTTGGTACGAGAATCTTTGAGACGTATACCGAATACTTT
GAACCTCGACGAAGTTAACGATGTTAAACGGAGAACTGGTTCTCTTCCCG
TAGGTTCGTATCGCGTCAATTATGAGATTGAGCCCAGGACAAGCACGATA
TGTGTGACAGAGGTTGTTTCCGGTATGAGAAGAGAAGTTTGTGAAGCTGA
AGCCGCATCAGACCCGGAAGCAAGGCTTCATTTGGAGTTCCAAGCCTTGT
ACCATGACGAGATGATCCATCTGAACTAA
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protein sequence of Ggra4582.t1

>Ggra4582.t1 ID=Ggra4582.t1|Name=Ggra4582.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MEPTSRDEAVARLHRYQEQDLKELYRQLEHLNREIEATELKVANYNNLLS
AARGVVGMRGGVVDYKASEARRRKSRTPKQRLWIKGDASTVFHEPQTLPL
PKHFLAPSGMVYTTFQKRFEAPRQSFTGSTARATIVLTKAASSEDDRSRR
CRLFTRLKTGQRLWLIYWFDRNASHWRQLVRPPRAKGGFRVGLFATRSPN
RPTPIGLSLSVVESFDASLGEIHVSGVDVLDETPLIALKEYDERSEACFG
TRSGWLEDCDRLQPLYYDPVTDESRMSSFSLQFGDRVSERIDFVNQRSAV
DIKSLVRESLRRIPNTLNLDEVNDVKRRTGSLPVGSYRVNYEIEPRTSTI
CVTEVVSGMRREVCEAEAASDPEARLHLEFQALYHDEMIHLN*
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mRNA from alignment at tig00000941_pilon:40638..41816-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4582.t1 ID=Ggra4582.t1|Name=Ggra4582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000941_pilon:40638..41816- (Gracilaria gracilis GNS1m male)
ATGGAACCCACCTCTCGTGATGAAGCGGTCGCCCGACTTCATCGATACCA
AGAACAGGATCTAAAGGAGCTGTACCGGCAGCTAGAGCATCTCAATCGCG
AAATAGAAGCCACTGAACTCAAGGTTGCAAACTACAACAACCTATTAAGT
GCCGCAAGGGGTGTGGTTGGGATGCGTGGCGGCGTGGTTGATTACAAAGC
CAGTGAGGCCCGAAGGCGAAAGTCAAGAACACCCAAGCAGCGACTTTGGA
TAAAAGGGGATGCCTCCACCGTTTTTCACGAGCCACAAACATTACCCCTT
CCTAAACACTTTCTTGCCCCGAGTGGAATGGTCTACACCACATTTCAGAA
ACGATTCGAAGCTCCCAGGCAAAGTTTTACTGGAAGTACAGCACGTGCGA
CCATTGTCCTGACCAAAGCAGCCAGTAGCGAAGATGACCGATCGAGAAGG
TGCCGTCTGTTCACTCGTTTAAAAACAGGACAAAGGTTATGGCTTATTTA
CTGGTTTGATCGAAATGCATCTCATTGGCGTCAACTTGTCAGACCTCCGC
GAGCAAAAGGGGGGTTTCGAGTGGGTCTCTTCGCCACCAGATCCCCGAAT
CGGCCAACGCCGATTGGTTTGTCACTGAGCGTTGTTGAAAGTTTTGACGC
ATCTCTGGGAGAAATTCATGTGAGCGGTGTAGATGTTTTGGACGAGACTC
CGCTAATTGCGTTGAAAGAGTATGACGAACGGAGCGAAGCTTGTTTTGGC
ACTCGATCTGGATGGCTGGAGGACTGTGATCGATTGCAACCATTGTACTA
TGATCCTGTGACTGACGAAAGCCGGATGTCATCATTCTCGCTGCAATTTG
GCGACCGAGTGTCAGAGAGAATAGACTTTGTTAATCAAAGGAGTGCAGTC
GATATTAAGTCCTTGGTACGAGAATCTTTGAGACGTATACCGAATACTTT
GAACCTCGACGAAGTTAACGATGTTAAACGGAGAACTGGTTCTCTTCCCG
TAGGTTCGTATCGCGTCAATTATGAGATTGAGCCCAGGACAAGCACGATA
TGTGTGACAGAGGTTGTTTCCGGTATGAGAAGAGAAGTTTGTGAAGCTGA
AGCCGCATCAGACCCGGAAGCAAGGCTTCATTTGGAGTTCCAAGCCTTGT
ACCATGACGAGATGATCCATCTGAACTAA
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Coding sequence (CDS) from alignment at tig00000941_pilon:40638..41816-

>Ggra4582.t1 ID=Ggra4582.t1|Name=Ggra4582.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000941_pilon:40638..41816- (Gracilaria gracilis GNS1m male)
ATGGAACCCACCTCTCGTGATGAAGCGGTCGCCCGACTTCATCGATACCA
AGAACAGGATCTAAAGGAGCTGTACCGGCAGCTAGAGCATCTCAATCGCG
AAATAGAAGCCACTGAACTCAAGGTTGCAAACTACAACAACCTATTAAGT
GCCGCAAGGGGTGTGGTTGGGATGCGTGGCGGCGTGGTTGATTACAAAGC
CAGTGAGGCCCGAAGGCGAAAGTCAAGAACACCCAAGCAGCGACTTTGGA
TAAAAGGGGATGCCTCCACCGTTTTTCACGAGCCACAAACATTACCCCTT
CCTAAACACTTTCTTGCCCCGAGTGGAATGGTCTACACCACATTTCAGAA
ACGATTCGAAGCTCCCAGGCAAAGTTTTACTGGAAGTACAGCACGTGCGA
CCATTGTCCTGACCAAAGCAGCCAGTAGCGAAGATGACCGATCGAGAAGG
TGCCGTCTGTTCACTCGTTTAAAAACAGGACAAAGGTTATGGCTTATTTA
CTGGTTTGATCGAAATGCATCTCATTGGCGTCAACTTGTCAGACCTCCGC
GAGCAAAAGGGGGGTTTCGAGTGGGTCTCTTCGCCACCAGATCCCCGAAT
CGGCCAACGCCGATTGGTTTGTCACTGAGCGTTGTTGAAAGTTTTGACGC
ATCTCTGGGAGAAATTCATGTGAGCGGTGTAGATGTTTTGGACGAGACTC
CGCTAATTGCGTTGAAAGAGTATGACGAACGGAGCGAAGCTTGTTTTGGC
ACTCGATCTGGATGGCTGGAGGACTGTGATCGATTGCAACCATTGTACTA
TGATCCTGTGACTGACGAAAGCCGGATGTCATCATTCTCGCTGCAATTTG
GCGACCGAGTGTCAGAGAGAATAGACTTTGTTAATCAAAGGAGTGCAGTC
GATATTAAGTCCTTGGTACGAGAATCTTTGAGACGTATACCGAATACTTT
GAACCTCGACGAAGTTAACGATGTTAAACGGAGAACTGGTTCTCTTCCCG
TAGGTTCGTATCGCGTCAATTATGAGATTGAGCCCAGGACAAGCACGATA
TGTGTGACAGAGGTTGTTTCCGGTATGAGAAGAGAAGTTTGTGAAGCTGA
AGCCGCATCAGACCCGGAAGCAAGGCTTCATTTGGAGTTCCAAGCCTTGT
ACCATGACGAGATGATCCATCTGAACTAA
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