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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005709342.1 |
| PFAMs | ABC2_membrane_3,ABC_tran |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K05643 |
| KEGG TC | 3.A.1.211 |
| KEGG Pathway | ko02010,map02010 |
| Evalue | 8.02e-178 |
| EggNOG OGs | COG1131@1|root,KOG0059@2759|Eukaryota |
| Description | ATPase activity, coupled to transmembrane movement of substances |
| COG category | V |
| BRITE | ko00000,ko00001,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra4580.t1.start1 | Ggra4580.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000941_pilon 35846..35848 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra4580.t1 ID=Ggra4580.t1|Name=Ggra4580.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=862bp MLLILLVVLQRALKAPEVVSFPFQRDPRGAFIARPLNPGRCEEIVEDLNI ADAVKLCSSNAFEPKYKVPTFVPEQFSDLVGSRNARVSGNNTGILGELSL EPFIFPEALPNRGFFESQTSYDGVFLHSYFEGNKLSPTYRRFLEVESDGE IDESYEMETIPAASREEFSSNLFNSWLKGTVFAPFTNAITFENAQRTDGN GISVAATLFYNESESTNCTESCPLVSSVISLENAIFRTVSPGNSAMAFLR RMPVIPVESDLGFIKLIISVVIGLISHFLLPNYLQIIVQERVARLRAMME IMGLRKRNYWLGTYLGLFIEYVLSQAMIMIVGAVIGISFYTDNTPLSYII LFFLWGNVLIAHAVLFAPFFGSPETAQTFGWFYVLIVNLVGGPYLGRRLS DDTATENTWAAIMLLPSFAFLRSVYYAGALNSGGKGITIEPEMFRDVALG ICQDRGIFCRSYLFLTVEFLVLFVLGFYFDLVIPTRHGTRLHPLFFIGFK RAVKTEGMEENVALKDSESDILSEESRASSIVQNIESEPFEGVVLDKLSK TYPGNPPVKAVQGLSLVVRQNEVLSIMAPNGAGKTSMFRTLIGELEPTSG NALIFGHSIINDLQQIHRSMGVAPQQDILWDSLTVQEHLFFYGRLKNLYG NRLKEEVEKTMESVQLTFAKNRKVRVISGGMKRRLSVSIAMIGNPRFIIL DEPSTGLDIVAREKLWNSIQRIKNDKAVILTTHSLEEAEALSTRVAIMSR GKLKCIGTPEDLKLRLGKGHRLSVSLPDSKVPQLHDAVLALAPEAVVETS LGGNVEYALPRSFAVAKIFSMMVERKAELRIKDWSINQSTLEDVFLQVTE RTRRTEAVDEV* back to topspliced messenger RNA >Ggra4580.t1 ID=Ggra4580.t1|Name=Ggra4580.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2586bp|location=Sequence derived from alignment at tig00000941_pilon:33160..35848- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCTTCTTATTCTGTTGGTTGTTCTCCAGAGAGCTCTAAAGGCACCAGA AGTTGTTTCCTTTCCTTTTCAACGAGATCCACGGGGTGCATTTATTGCTC GTCCACTGAACCCTGGTCGCTGCGAGGAGATAGTCGAGGATCTCAACATT GCAGATGCTGTGAAGTTATGCAGTAGCAATGCTTTTGAACCAAAATACAA GGTTCCAACTTTTGTCCCAGAACAGTTTTCTGATCTCGTCGGATCACGTA ACGCAAGAGTTTCGGGAAATAACACCGGCATACTGGGGGAATTGTCTTTG GAGCCCTTTATTTTTCCAGAGGCTCTGCCCAATCGTGGATTCTTCGAATC TCAGACAAGTTACGACGGTGTTTTTCTTCACTCGTATTTTGAAGGCAATA AACTTAGTCCTACCTACCGAAGGTTCCTTGAGGTTGAAAGTGATGGTGAG ATCGATGAAAGCTATGAGATGGAGACAATCCCTGCTGCTTCGAGGGAGGA ATTCTCAAGTAACCTTTTCAACTCATGGTTGAAAGGTACAGTTTTTGCTC CGTTTACGAACGCCATAACCTTCGAGAACGCCCAGCGAACTGATGGAAAC GGAATCAGCGTAGCTGCTACTTTGTTCTACAACGAATCCGAAAGTACGAA TTGCACGGAGTCCTGCCCTCTCGTATCGAGCGTAATTAGTCTTGAAAACG CCATCTTCAGAACCGTTTCCCCCGGCAACTCTGCCATGGCATTCCTTCGT CGCATGCCTGTGATCCCGGTTGAAAGCGATTTGGGTTTCATCAAGTTGAT TATCAGCGTCGTCATTGGCCTCATTAGTCATTTCCTCTTGCCTAATTATC TTCAGATTATTGTTCAGGAGCGTGTGGCAAGACTACGGGCTATGATGGAG ATCATGGGACTGCGCAAACGAAACTACTGGTTGGGTACGTATCTTGGGCT GTTCATTGAATATGTTCTTTCGCAGGCGATGATCATGATCGTGGGGGCTG TGATAGGGATATCGTTTTATACCGATAACACTCCCTTGTCTTATATCATT CTCTTCTTTTTGTGGGGGAATGTACTTATCGCGCATGCAGTCCTTTTCGC TCCTTTCTTCGGAAGCCCAGAAACTGCCCAAACATTCGGTTGGTTTTATG TGCTCATTGTGAATCTTGTCGGTGGTCCTTACCTTGGACGTCGATTGAGT GACGACACAGCCACAGAAAACACATGGGCTGCGATTATGCTCTTGCCATC CTTTGCGTTTCTTCGAAGCGTGTACTACGCCGGAGCTCTGAATAGTGGTG GGAAAGGCATTACTATAGAGCCAGAAATGTTTCGTGATGTAGCATTGGGA ATATGTCAGGACCGAGGTATATTCTGCAGGTCATATTTGTTCTTGACAGT TGAATTTTTGGTCTTGTTCGTTCTCGGTTTCTACTTTGATCTTGTCATCC CTACCCGACATGGGACTCGTCTTCACCCGTTATTCTTTATTGGATTCAAG AGGGCAGTTAAGACGGAGGGCATGGAAGAGAATGTTGCCTTGAAAGATTC AGAATCGGATATTCTTAGTGAAGAGTCTCGAGCAAGCTCTATAGTGCAAA ACATTGAAAGCGAACCGTTCGAAGGAGTGGTGCTTGATAAGCTCTCCAAG ACATATCCGGGTAACCCTCCCGTTAAAGCCGTACAAGGTCTATCGCTAGT TGTAAGACAAAATGAAGTGCTCAGTATCATGGCCCCAAATGGAGCTGGGA AGACTTCTATGTTTAGAACTCTTATCGGGGAATTGGAACCAACATCTGGA AACGCTTTGATCTTTGGACATTCAATAATCAATGACCTCCAACAAATTCA TAGAAGCATGGGAGTTGCCCCACAACAGGATATATTATGGGATTCGTTGA CAGTACAAGAACATCTCTTCTTCTACGGGCGCCTGAAGAACCTCTACGGA AATCGTTTGAAGGAGGAGGTAGAGAAAACTATGGAATCGGTTCAGTTGAC GTTCGCAAAGAATAGAAAAGTTCGTGTGATAAGTGGGGGTATGAAGCGTC GCCTATCTGTGAGCATTGCCATGATTGGAAATCCTAGGTTTATTATCTTA GATGAGCCGTCTACAGGACTTGACATTGTTGCTCGTGAGAAGCTATGGAA CTCGATTCAGCGCATCAAGAACGACAAAGCGGTAATACTAACCACTCACT CTCTCGAAGAAGCCGAGGCTCTCAGTACGAGGGTGGCAATTATGTCCAGG GGAAAGTTGAAATGTATCGGGACACCAGAAGATCTGAAGTTGAGGCTTGG AAAAGGGCACCGTCTCTCAGTTTCGCTGCCTGATTCAAAGGTCCCCCAGT TGCACGACGCGGTTTTGGCTCTTGCCCCTGAGGCCGTGGTCGAGACTTCT TTAGGCGGCAATGTAGAGTATGCACTGCCAAGATCATTTGCAGTAGCCAA GATCTTTTCTATGATGGTTGAAAGAAAGGCGGAACTACGTATCAAAGACT GGTCCATAAACCAATCTACACTTGAAGATGTATTCTTACAAGTAACAGAA AGGACGAGACGCACTGAAGCTGTGGATGAAGTTTAG back to topprotein sequence of Ggra4580.t1 >Ggra4580.t1 ID=Ggra4580.t1|Name=Ggra4580.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=862bp
MLLILLVVLQRALKAPEVVSFPFQRDPRGAFIARPLNPGRCEEIVEDLNI ADAVKLCSSNAFEPKYKVPTFVPEQFSDLVGSRNARVSGNNTGILGELSL EPFIFPEALPNRGFFESQTSYDGVFLHSYFEGNKLSPTYRRFLEVESDGE IDESYEMETIPAASREEFSSNLFNSWLKGTVFAPFTNAITFENAQRTDGN GISVAATLFYNESESTNCTESCPLVSSVISLENAIFRTVSPGNSAMAFLR RMPVIPVESDLGFIKLIISVVIGLISHFLLPNYLQIIVQERVARLRAMME IMGLRKRNYWLGTYLGLFIEYVLSQAMIMIVGAVIGISFYTDNTPLSYII LFFLWGNVLIAHAVLFAPFFGSPETAQTFGWFYVLIVNLVGGPYLGRRLS DDTATENTWAAIMLLPSFAFLRSVYYAGALNSGGKGITIEPEMFRDVALG ICQDRGIFCRSYLFLTVEFLVLFVLGFYFDLVIPTRHGTRLHPLFFIGFK RAVKTEGMEENVALKDSESDILSEESRASSIVQNIESEPFEGVVLDKLSK TYPGNPPVKAVQGLSLVVRQNEVLSIMAPNGAGKTSMFRTLIGELEPTSG NALIFGHSIINDLQQIHRSMGVAPQQDILWDSLTVQEHLFFYGRLKNLYG NRLKEEVEKTMESVQLTFAKNRKVRVISGGMKRRLSVSIAMIGNPRFIIL DEPSTGLDIVAREKLWNSIQRIKNDKAVILTTHSLEEAEALSTRVAIMSR GKLKCIGTPEDLKLRLGKGHRLSVSLPDSKVPQLHDAVLALAPEAVVETS LGGNVEYALPRSFAVAKIFSMMVERKAELRIKDWSINQSTLEDVFLQVTE RTRRTEAVDEV* back to topmRNA from alignment at tig00000941_pilon:33160..35848- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra4580.t1 ID=Ggra4580.t1|Name=Ggra4580.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2689bp|location=Sequence derived from alignment at tig00000941_pilon:33160..35848- (Gracilaria gracilis GNS1m male) ATGCTTCTTATTCTGTTGGTTGTTCTCCAGAGAGCTCTAAAGGCACCAGA
AGTTGTTTCCTTTCCTTTTCAACGAGATCCACGGGGTGCATTTATTGCTC
GTCCACTGAACCCTGGTCGCTGCGAGGAGATAGTCGAGGATCTCAACATT
GCAGATGCTGTGAAGTTATGCAGTAGCAATGCTTTTGAACCAAAATACAA
GGTTCCAACTTTTGTCCCAGAACAGTTTTCTGATCTCGTCGGATCACGTA
ACGCAAGAGTTTCGGGAAATAACACCGGCATACTGGGGGAATTGTCTTTG
GAGCCCTTTATTTTTCCAGAGGCTCTGCCCAATCGTGGATTCTTCGAATC
TCAGACAAGTTACGACGGTGTTTTTCTTCACTCGTATTTTGAAGGCAATA
AACTTAGTCCTACCTACCGAAGGTTCCTTGAGGTTGAAAGTGATGGTGAG
ATCGATGAAAGCTATGAGATGGAGACAATCCCTGCTGCTTCGAGGGAGGA
ATTCTCAAGTAACCTTTTCAACTCATGGTTGAAAGGTACAGTTTTTGCTC
CGTTTACGAACGCCATAACCTTCGAGAACGCCCAGCGAACTGATGGAAAC
GGAATCAGCGTAGCTGCTACTTTGTTCTACAACGAATCCGAAAGTACGAA
TTGCACGGAGTCCTGCCCTCTCGTATCGAGCGTAATTAGTCTTGAAAACG
CCATCTTCAGAACCGTTTCCCCCGGCAACTCTGCCATGGCATTCCTTCGT
CGCATGCCTGTGATCCCGGTTGAAAGCGATTTGGGTTTCATCAAGTTGAT
TATCAGCGTCGTCATTGGCCTCATTAGTCATTTCCTCTTGCCTAATTATC
TTCAGATTATTGTTCAGGAGCGTGTGGCAAGACTACGGGCTATGATGGAG
ATCATGGGACTGCGCAAACGAAACTACTGGTTGGGTACGTATCTTGGGCT
GTTCATTGAATATGTTCTTTCGCAGGCGATGATCATGATCGTGGGGGCTG
TGATAGGGATATCGTTTTATACCGATAACACTCCCTTGTCTTATATCATT
CTCTTCTTTTTGTGGTACGTTCGAGACTCCTCGTCACTTTAACTTCATGC
TTATTGACTAACGCACCATTGCCGATCTTGGTGTCTGGGTATTCTTCCTT
TTCTTTCACACCACTAGGGGGAATGTACTTATCGCGCATGCAGTCCTTTT
CGCTCCTTTCTTCGGAAGCCCAGAAACTGCCCAAACATTCGGTTGGTTTT
ATGTGCTCATTGTGAATCTTGTCGGTGGTCCTTACCTTGGACGTCGATTG
AGTGACGACACAGCCACAGAAAACACATGGGCTGCGATTATGCTCTTGCC
ATCCTTTGCGTTTCTTCGAAGCGTGTACTACGCCGGAGCTCTGAATAGTG
GTGGGAAAGGCATTACTATAGAGCCAGAAATGTTTCGTGATGTAGCATTG
GGAATATGTCAGGACCGAGGTATATTCTGCAGGTCATATTTGTTCTTGAC
AGTTGAATTTTTGGTCTTGTTCGTTCTCGGTTTCTACTTTGATCTTGTCA
TCCCTACCCGACATGGGACTCGTCTTCACCCGTTATTCTTTATTGGATTC
AAGAGGGCAGTTAAGACGGAGGGCATGGAAGAGAATGTTGCCTTGAAAGA
TTCAGAATCGGATATTCTTAGTGAAGAGTCTCGAGCAAGCTCTATAGTGC
AAAACATTGAAAGCGAACCGTTCGAAGGAGTGGTGCTTGATAAGCTCTCC
AAGACATATCCGGGTAACCCTCCCGTTAAAGCCGTACAAGGTCTATCGCT
AGTTGTAAGACAAAATGAAGTGCTCAGTATCATGGCCCCAAATGGAGCTG
GGAAGACTTCTATGTTTAGAACTCTTATCGGGGAATTGGAACCAACATCT
GGAAACGCTTTGATCTTTGGACATTCAATAATCAATGACCTCCAACAAAT
TCATAGAAGCATGGGAGTTGCCCCACAACAGGATATATTATGGGATTCGT
TGACAGTACAAGAACATCTCTTCTTCTACGGGCGCCTGAAGAACCTCTAC
GGAAATCGTTTGAAGGAGGAGGTAGAGAAAACTATGGAATCGGTTCAGTT
GACGTTCGCAAAGAATAGAAAAGTTCGTGTGATAAGTGGGGGTATGAAGC
GTCGCCTATCTGTGAGCATTGCCATGATTGGAAATCCTAGGTTTATTATC
TTAGATGAGCCGTCTACAGGACTTGACATTGTTGCTCGTGAGAAGCTATG
GAACTCGATTCAGCGCATCAAGAACGACAAAGCGGTAATACTAACCACTC
ACTCTCTCGAAGAAGCCGAGGCTCTCAGTACGAGGGTGGCAATTATGTCC
AGGGGAAAGTTGAAATGTATCGGGACACCAGAAGATCTGAAGTTGAGGCT
TGGAAAAGGGCACCGTCTCTCAGTTTCGCTGCCTGATTCAAAGGTCCCCC
AGTTGCACGACGCGGTTTTGGCTCTTGCCCCTGAGGCCGTGGTCGAGACT
TCTTTAGGCGGCAATGTAGAGTATGCACTGCCAAGATCATTTGCAGTAGC
CAAGATCTTTTCTATGATGGTTGAAAGAAAGGCGGAACTACGTATCAAAG
ACTGGTCCATAAACCAATCTACACTTGAAGATGTATTCTTACAAGTAACA
GAAAGGACGAGACGCACTGAAGCTGTGGATGAAGTTTAG back to topCoding sequence (CDS) from alignment at tig00000941_pilon:33160..35848- >Ggra4580.t1 ID=Ggra4580.t1|Name=Ggra4580.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2586bp|location=Sequence derived from alignment at tig00000941_pilon:33160..35848- (Gracilaria gracilis GNS1m male) ATGCTTCTTATTCTGTTGGTTGTTCTCCAGAGAGCTCTAAAGGCACCAGA AGTTGTTTCCTTTCCTTTTCAACGAGATCCACGGGGTGCATTTATTGCTC GTCCACTGAACCCTGGTCGCTGCGAGGAGATAGTCGAGGATCTCAACATT GCAGATGCTGTGAAGTTATGCAGTAGCAATGCTTTTGAACCAAAATACAA GGTTCCAACTTTTGTCCCAGAACAGTTTTCTGATCTCGTCGGATCACGTA ACGCAAGAGTTTCGGGAAATAACACCGGCATACTGGGGGAATTGTCTTTG GAGCCCTTTATTTTTCCAGAGGCTCTGCCCAATCGTGGATTCTTCGAATC TCAGACAAGTTACGACGGTGTTTTTCTTCACTCGTATTTTGAAGGCAATA AACTTAGTCCTACCTACCGAAGGTTCCTTGAGGTTGAAAGTGATGGTGAG ATCGATGAAAGCTATGAGATGGAGACAATCCCTGCTGCTTCGAGGGAGGA ATTCTCAAGTAACCTTTTCAACTCATGGTTGAAAGGTACAGTTTTTGCTC CGTTTACGAACGCCATAACCTTCGAGAACGCCCAGCGAACTGATGGAAAC GGAATCAGCGTAGCTGCTACTTTGTTCTACAACGAATCCGAAAGTACGAA TTGCACGGAGTCCTGCCCTCTCGTATCGAGCGTAATTAGTCTTGAAAACG CCATCTTCAGAACCGTTTCCCCCGGCAACTCTGCCATGGCATTCCTTCGT CGCATGCCTGTGATCCCGGTTGAAAGCGATTTGGGTTTCATCAAGTTGAT TATCAGCGTCGTCATTGGCCTCATTAGTCATTTCCTCTTGCCTAATTATC TTCAGATTATTGTTCAGGAGCGTGTGGCAAGACTACGGGCTATGATGGAG ATCATGGGACTGCGCAAACGAAACTACTGGTTGGGTACGTATCTTGGGCT GTTCATTGAATATGTTCTTTCGCAGGCGATGATCATGATCGTGGGGGCTG TGATAGGGATATCGTTTTATACCGATAACACTCCCTTGTCTTATATCATT CTCTTCTTTTTGTGGGGGAATGTACTTATCGCGCATGCAGTCCTTTTCGC TCCTTTCTTCGGAAGCCCAGAAACTGCCCAAACATTCGGTTGGTTTTATG TGCTCATTGTGAATCTTGTCGGTGGTCCTTACCTTGGACGTCGATTGAGT GACGACACAGCCACAGAAAACACATGGGCTGCGATTATGCTCTTGCCATC CTTTGCGTTTCTTCGAAGCGTGTACTACGCCGGAGCTCTGAATAGTGGTG GGAAAGGCATTACTATAGAGCCAGAAATGTTTCGTGATGTAGCATTGGGA ATATGTCAGGACCGAGGTATATTCTGCAGGTCATATTTGTTCTTGACAGT TGAATTTTTGGTCTTGTTCGTTCTCGGTTTCTACTTTGATCTTGTCATCC CTACCCGACATGGGACTCGTCTTCACCCGTTATTCTTTATTGGATTCAAG AGGGCAGTTAAGACGGAGGGCATGGAAGAGAATGTTGCCTTGAAAGATTC AGAATCGGATATTCTTAGTGAAGAGTCTCGAGCAAGCTCTATAGTGCAAA ACATTGAAAGCGAACCGTTCGAAGGAGTGGTGCTTGATAAGCTCTCCAAG ACATATCCGGGTAACCCTCCCGTTAAAGCCGTACAAGGTCTATCGCTAGT TGTAAGACAAAATGAAGTGCTCAGTATCATGGCCCCAAATGGAGCTGGGA AGACTTCTATGTTTAGAACTCTTATCGGGGAATTGGAACCAACATCTGGA AACGCTTTGATCTTTGGACATTCAATAATCAATGACCTCCAACAAATTCA TAGAAGCATGGGAGTTGCCCCACAACAGGATATATTATGGGATTCGTTGA CAGTACAAGAACATCTCTTCTTCTACGGGCGCCTGAAGAACCTCTACGGA AATCGTTTGAAGGAGGAGGTAGAGAAAACTATGGAATCGGTTCAGTTGAC GTTCGCAAAGAATAGAAAAGTTCGTGTGATAAGTGGGGGTATGAAGCGTC GCCTATCTGTGAGCATTGCCATGATTGGAAATCCTAGGTTTATTATCTTA GATGAGCCGTCTACAGGACTTGACATTGTTGCTCGTGAGAAGCTATGGAA CTCGATTCAGCGCATCAAGAACGACAAAGCGGTAATACTAACCACTCACT CTCTCGAAGAAGCCGAGGCTCTCAGTACGAGGGTGGCAATTATGTCCAGG GGAAAGTTGAAATGTATCGGGACACCAGAAGATCTGAAGTTGAGGCTTGG AAAAGGGCACCGTCTCTCAGTTTCGCTGCCTGATTCAAAGGTCCCCCAGT TGCACGACGCGGTTTTGGCTCTTGCCCCTGAGGCCGTGGTCGAGACTTCT TTAGGCGGCAATGTAGAGTATGCACTGCCAAGATCATTTGCAGTAGCCAA GATCTTTTCTATGATGGTTGAAAGAAAGGCGGAACTACGTATCAAAGACT GGTCCATAAACCAATCTACACTTGAAGATGTATTCTTACAAGTAACAGAA AGGACGAGACGCACTGAAGCTGTGGATGAAGTTTAG back to top
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