Ggra458.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra458.t1
Unique NameGgra458.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000242_piloncontigtig00000242_pilon:51319..52231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29908.U7PUF3
PFAMsDUF563
Max annot lvl4751|Fungi
Evalue5.76e-12
EggNOG OGsKOG4698@1|root,KOG4698@2759|Eukaryota,38DN6@33154|Opisthokonta,3NTZG@4751|Fungi,3QQZ2@4890|Ascomycota,212TW@147550|Sordariomycetes,3UUMY@5151|Ophiostomatales
DescriptionProtein of unknown function (DUF563)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra458Ggra458Gracilaria gracilis GNS1m malegenetig00000242_pilon 51319..52231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra458.t1Ggra458.t1Gracilaria gracilis GNS1m malepolypeptidetig00000242_pilon 51319..52231 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra458.t1.stop1Ggra458.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000242_pilon 51319..51321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra458.t1.CDS1Ggra458.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000242_pilon 51319..51895 -
Ggra458.t1.CDS2Ggra458.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000242_pilon 51969..52231 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra458.t1.exon1Ggra458.t1.exon1Gracilaria gracilis GNS1m maleexontig00000242_pilon 51319..51895 -
Ggra458.t1.exon2Ggra458.t1.exon2Gracilaria gracilis GNS1m maleexontig00000242_pilon 51969..52231 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra458.t1.intron1Ggra458.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000242_pilon 51896..51968 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra458.t1.start1Ggra458.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000242_pilon 52229..52231 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra458.t1 ID=Ggra458.t1|Name=Ggra458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=280bp
MCINHHYITLSPDSRPQLTQLAENKSCQLASGEALQFMKRHIRFQRMRET
YANDLIDPAYLISKRPYKESNMRHIPHYMEFCITSGDTRAEWFDGVHEAF
NTAFHKVQATDREERTCFRSVSLSKCDGVAPETVLFEKRVAAALDANKAK
ARTGNKAAPIQVRILSRAETRRMLNVTKVERLIQSTFASHGIRVQIELIR
FEDTPFRYQLEKMMSTDVLIGSHGAGMTNIMFRRQGSFVIEIIPFGMEKA
GFRRLSRLAGLHYANIFSACRREEGGAVC*
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spliced messenger RNA

>Ggra458.t1 ID=Ggra458.t1|Name=Ggra458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000242_pilon:51319..52231- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCATCAACCACCATTACATCACCTTGTCTCCGGATTCACGTCCACA
ACTCACGCAGCTTGCCGAGAACAAGTCGTGTCAACTTGCATCCGGCGAGG
CGCTGCAATTCATGAAGCGACACATTCGTTTTCAGCGCATGCGTGAAACA
TACGCAAACGATCTAATCGACCCAGCGTATTTGATTTCGAAGCGCCCGTA
CAAGGAGAGCAACATGAGACACATACCGCATTACATGGAGTTTTGCATTA
CAAGCGGCGATACACGTGCGGAATGGTTTGACGGCGTACATGAAGCGTTC
AACACGGCGTTTCATAAGGTGCAAGCCACCGATCGGGAAGAGCGCACATG
TTTTCGAAGCGTGTCTTTGAGCAAGTGTGATGGTGTCGCTCCTGAGACAG
TTCTGTTTGAGAAACGGGTTGCGGCTGCACTTGATGCCAACAAAGCCAAG
GCGAGAACTGGAAACAAGGCCGCGCCGATTCAAGTTCGAATTCTTTCTCG
TGCTGAAACGAGACGAATGCTGAACGTCACAAAAGTTGAACGGTTGATTC
AAAGCACATTTGCAAGTCACGGAATACGCGTCCAGATAGAGCTCATCCGC
TTTGAAGATACACCGTTCCGATATCAACTGGAGAAGATGATGAGCACGGA
TGTGCTCATAGGATCACACGGCGCCGGCATGACCAACATAATGTTCAGGC
GACAAGGAAGCTTTGTAATCGAAATCATTCCATTCGGCATGGAGAAAGCG
GGCTTTCGACGGCTGAGTCGCCTGGCTGGCTTGCACTACGCTAATATCTT
CAGCGCCTGCCGACGAGAAGAGGGTGGAGCGGTGTGCTAA
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protein sequence of Ggra458.t1

>Ggra458.t1 ID=Ggra458.t1|Name=Ggra458.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=280bp
MCINHHYITLSPDSRPQLTQLAENKSCQLASGEALQFMKRHIRFQRMRET
YANDLIDPAYLISKRPYKESNMRHIPHYMEFCITSGDTRAEWFDGVHEAF
NTAFHKVQATDREERTCFRSVSLSKCDGVAPETVLFEKRVAAALDANKAK
ARTGNKAAPIQVRILSRAETRRMLNVTKVERLIQSTFASHGIRVQIELIR
FEDTPFRYQLEKMMSTDVLIGSHGAGMTNIMFRRQGSFVIEIIPFGMEKA
GFRRLSRLAGLHYANIFSACRREEGGAVC*
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mRNA from alignment at tig00000242_pilon:51319..52231-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra458.t1 ID=Ggra458.t1|Name=Ggra458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=913bp|location=Sequence derived from alignment at tig00000242_pilon:51319..52231- (Gracilaria gracilis GNS1m male)
ATGTGCATCAACCACCATTACATCACCTTGTCTCCGGATTCACGTCCACA
ACTCACGCAGCTTGCCGAGAACAAGTCGTGTCAACTTGCATCCGGCGAGG
CGCTGCAATTCATGAAGCGACACATTCGTTTTCAGCGCATGCGTGAAACA
TACGCAAACGATCTAATCGACCCAGCGTATTTGATTTCGAAGCGCCCGTA
CAAGGAGAGCAACATGAGACACATACCGCATTACATGGAGTTTTGCATTA
CAAGCGGCGATACGTACGGCAAGCCTTCTCCAAATAGTAAACATGACACT
TGCCGATCCGTTGTTGTTGACTCCCAAGTTCAACAGACGTGCGGAATGGT
TTGACGGCGTACATGAAGCGTTCAACACGGCGTTTCATAAGGTGCAAGCC
ACCGATCGGGAAGAGCGCACATGTTTTCGAAGCGTGTCTTTGAGCAAGTG
TGATGGTGTCGCTCCTGAGACAGTTCTGTTTGAGAAACGGGTTGCGGCTG
CACTTGATGCCAACAAAGCCAAGGCGAGAACTGGAAACAAGGCCGCGCCG
ATTCAAGTTCGAATTCTTTCTCGTGCTGAAACGAGACGAATGCTGAACGT
CACAAAAGTTGAACGGTTGATTCAAAGCACATTTGCAAGTCACGGAATAC
GCGTCCAGATAGAGCTCATCCGCTTTGAAGATACACCGTTCCGATATCAA
CTGGAGAAGATGATGAGCACGGATGTGCTCATAGGATCACACGGCGCCGG
CATGACCAACATAATGTTCAGGCGACAAGGAAGCTTTGTAATCGAAATCA
TTCCATTCGGCATGGAGAAAGCGGGCTTTCGACGGCTGAGTCGCCTGGCT
GGCTTGCACTACGCTAATATCTTCAGCGCCTGCCGACGAGAAGAGGGTGG
AGCGGTGTGCTAA
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Coding sequence (CDS) from alignment at tig00000242_pilon:51319..52231-

>Ggra458.t1 ID=Ggra458.t1|Name=Ggra458.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00000242_pilon:51319..52231- (Gracilaria gracilis GNS1m male)
ATGTGCATCAACCACCATTACATCACCTTGTCTCCGGATTCACGTCCACA
ACTCACGCAGCTTGCCGAGAACAAGTCGTGTCAACTTGCATCCGGCGAGG
CGCTGCAATTCATGAAGCGACACATTCGTTTTCAGCGCATGCGTGAAACA
TACGCAAACGATCTAATCGACCCAGCGTATTTGATTTCGAAGCGCCCGTA
CAAGGAGAGCAACATGAGACACATACCGCATTACATGGAGTTTTGCATTA
CAAGCGGCGATACACGTGCGGAATGGTTTGACGGCGTACATGAAGCGTTC
AACACGGCGTTTCATAAGGTGCAAGCCACCGATCGGGAAGAGCGCACATG
TTTTCGAAGCGTGTCTTTGAGCAAGTGTGATGGTGTCGCTCCTGAGACAG
TTCTGTTTGAGAAACGGGTTGCGGCTGCACTTGATGCCAACAAAGCCAAG
GCGAGAACTGGAAACAAGGCCGCGCCGATTCAAGTTCGAATTCTTTCTCG
TGCTGAAACGAGACGAATGCTGAACGTCACAAAAGTTGAACGGTTGATTC
AAAGCACATTTGCAAGTCACGGAATACGCGTCCAGATAGAGCTCATCCGC
TTTGAAGATACACCGTTCCGATATCAACTGGAGAAGATGATGAGCACGGA
TGTGCTCATAGGATCACACGGCGCCGGCATGACCAACATAATGTTCAGGC
GACAAGGAAGCTTTGTAATCGAAATCATTCCATTCGGCATGGAGAAAGCG
GGCTTTCGACGGCTGAGTCGCCTGGCTGGCTTGCACTACGCTAATATCTT
CAGCGCCTGCCGACGAGAAGAGGGTGGAGCGGTGTGCTAA
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