Ggra4578.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4578.t1
Unique NameGgra4578.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:24005..29429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102107.XP_008220127.1
PFAMsHydrolase_3,UPF0054
Max annot lvl35493|Streptophyta
KEGG koko:K07042
GOsGO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0050308
Evalue2.75e-33
EggNOG OGsCOG0319@1|root,2QUN8@2759|Eukaryota,37NY6@33090|Viridiplantae,3GA0H@35493|Streptophyta,4JK75@91835|fabids
DescriptionUncharacterized protein family UPF0054
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4578Ggra4578Gracilaria gracilis GNS1m malegenetig00000941_pilon 24005..29429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4578.t1Ggra4578.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 24005..29429 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4578.t1.stop1Ggra4578.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 24005..24007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4578.t1.CDS1Ggra4578.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 24005..24041 -
Ggra4578.t1.CDS2Ggra4578.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000941_pilon 28460..28570 -
Ggra4578.t1.CDS3Ggra4578.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000941_pilon 28654..28736 -
Ggra4578.t1.CDS4Ggra4578.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000941_pilon 28827..29429 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4578.t1.exon1Ggra4578.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 24005..24041 -
Ggra4578.t1.exon2Ggra4578.t1.exon2Gracilaria gracilis GNS1m maleexontig00000941_pilon 28460..28570 -
Ggra4578.t1.exon3Ggra4578.t1.exon3Gracilaria gracilis GNS1m maleexontig00000941_pilon 28654..28736 -
Ggra4578.t1.exon4Ggra4578.t1.exon4Gracilaria gracilis GNS1m maleexontig00000941_pilon 28827..29429 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4578.t1.intron1Ggra4578.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000941_pilon 24042..28459 -
Ggra4578.t1.intron2Ggra4578.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000941_pilon 28571..28653 -
Ggra4578.t1.intron3Ggra4578.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000941_pilon 28737..28826 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4578.t1.start1Ggra4578.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 29427..29429 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4578.t1 ID=Ggra4578.t1|Name=Ggra4578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=278bp
MSLVDTGSTIWQRKHCEAFVPGLSNKFWESSSKHNKVVCPAPINIRVAKR
RQPSLVPISQLSPPNKDVDWIFVDIVVKTQIAAMSDELEHEVQDDGLTLV
RVALRDAPTELSIVLCDDQEISSLNSRWRGIDKATDVLSFPQNDPDMVVL
GDIVISVETALRQAEERQCDIRDEIRVLLVHGLLHLMGYDHEGAIEGDWL
VMAKMENQFLKQLGWKGEGLISSVQEDATACVHSESEHPCELISPPCPEL
NKNKSVLWVAYSVYRRYNELSMMCVYC*
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spliced messenger RNA

>Ggra4578.t1 ID=Ggra4578.t1|Name=Ggra4578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000941_pilon:24005..29429- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTAGTTGACACGGGGTCGACCATTTGGCAAAGAAAGCATTGCGA
GGCATTCGTTCCTGGCCTGTCGAATAAATTCTGGGAATCATCCTCGAAGC
ATAACAAAGTAGTGTGTCCGGCACCGATTAATATCAGGGTTGCGAAACGT
CGTCAGCCCTCCTTAGTTCCAATTTCTCAGCTATCTCCGCCAAACAAAGA
TGTCGACTGGATTTTTGTGGACATTGTTGTAAAGACACAAATCGCGGCCA
TGTCGGATGAACTGGAACATGAGGTGCAGGATGATGGCCTAACTCTTGTA
CGAGTAGCACTACGTGACGCGCCAACAGAACTTTCTATAGTTTTATGTGA
TGACCAGGAGATTTCCAGCTTAAATTCTCGGTGGCGCGGAATTGACAAAG
CAACAGATGTCCTGTCCTTTCCGCAAAACGATCCGGATATGGTAGTCCTC
GGCGATATTGTGATAAGCGTCGAAACCGCGTTGAGGCAAGCAGAAGAACG
GCAATGTGATATAAGAGATGAGATTCGCGTGCTCCTAGTGCACGGGTTGC
TTCACCTGATGGGATACGACCACGAAGGTGCTATCGAAGGTGATTGGCTT
GTTATGGCTAAGATGGAGAACCAATTCCTCAAACAGCTGGGGTGGAAGGG
AGAAGGGCTTATTTCTTCAGTACAAGAAGACGCGACAGCTTGCGTGCATA
GTGAAAGTGAACATCCCTGTGAGCTTATCTCTCCACCTTGTCCAGAACTG
AATAAGAACAAGAGTGTATTGTGGGTGGCATACTCTGTATACCGAAGGTA
TAATGAGCTTAGCATGATGTGTGTGTATTGTTGA
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protein sequence of Ggra4578.t1

>Ggra4578.t1 ID=Ggra4578.t1|Name=Ggra4578.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
MSLVDTGSTIWQRKHCEAFVPGLSNKFWESSSKHNKVVCPAPINIRVAKR
RQPSLVPISQLSPPNKDVDWIFVDIVVKTQIAAMSDELEHEVQDDGLTLV
RVALRDAPTELSIVLCDDQEISSLNSRWRGIDKATDVLSFPQNDPDMVVL
GDIVISVETALRQAEERQCDIRDEIRVLLVHGLLHLMGYDHEGAIEGDWL
VMAKMENQFLKQLGWKGEGLISSVQEDATACVHSESEHPCELISPPCPEL
NKNKSVLWVAYSVYRRYNELSMMCVYC*
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mRNA from alignment at tig00000941_pilon:24005..29429-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4578.t1 ID=Ggra4578.t1|Name=Ggra4578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=5425bp|location=Sequence derived from alignment at tig00000941_pilon:24005..29429- (Gracilaria gracilis GNS1m male)
ATGTCGTTAGTTGACACGGGGTCGACCATTTGGCAAAGAAAGCATTGCGA
GGCATTCGTTCCTGGCCTGTCGAATAAATTCTGGGAATCATCCTCGAAGC
ATAACAAAGTAGTGTGTCCGGCACCGATTAATATCAGGGTTGCGAAACGT
CGTCAGCCCTCCTTAGTTCCAATTTCTCAGCTATCTCCGCCAAACAAAGA
TGTCGACTGGATTTTTGTGGACATTGTTGTAAAGACACAAATCGCGGCCA
TGTCGGATGAACTGGAACATGAGGTGCAGGATGATGGCCTAACTCTTGTA
CGAGTAGCACTACGTGACGCGCCAACAGAACTTTCTATAGTTTTATGTGA
TGACCAGGAGATTTCCAGCTTAAATTCTCGGTGGCGCGGAATTGACAAAG
CAACAGATGTCCTGTCCTTTCCGCAAAACGATCCGGATATGGTAGTCCTC
GGCGATATTGTGATAAGCGTCGAAACCGCGTTGAGGCAAGCAGAAGAACG
GCAATGTGATATAAGAGATGAGATTCGCGTGCTCCTAGTGCACGGGTTGC
TTCACCTGATGGGATACGACCACGAAGGTGCTATCGAAGGTGATTGGCTT
GTTGTAAGTTACTGCGAATCATTTCTGCACGGTATGTATTAATATGGATG
TTTGCAAACTAACGAACAGACGTCTTGTGGTGAATATACGAAGATGGCTA
AGATGGAGAACCAATTCCTCAAACAGCTGGGGTGGAAGGGAGAAGGGCTT
ATTTCTTCAGTACAAGAAGACGCGACGTACCGAGACATTGTACAGTCTTA
AGCCAAACTTTTTTTATCAAACTTGTTCCCCTCTGGTTTACGGGGTCGAT
TCGCTGTAGAGCTTGCGTGCATAGTGAAAGTGAACATCCCTGTGAGCTTA
TCTCTCCACCTTGTCCAGAACTGAATAAGAACAAGAGTGTATTGTGGGTG
GCATACTCTGTATACCGAAGGTATAATGAGAGAGAGAGAGACCTTTATTT
CAGGAAATAAGGACAAACGTTGATCACGCCGACGTGGCAGCGTGTGCGTG
CATGTGAAGCGTCCAGCGCCGACGATTTACGGCAGCAGCTGTCAATTGCA
GAACAATTCGTTCTAAGCGCAGGACCAAGGAATGGTACTCGTTGACGGGG
TTTGAGCCGCGTACGCTGCTGGCGTACTCCGCAACGCGGCGAGAAAAGCG
TCTTCCGGACTCTCCCAGGCCGCCGTGAACGTCGAAACCGAACGGAACGA
ATTCGACATTATTGGTGGCACAAAGCGAGCTGTACTTCGAGCGTTTAAAC
TCCTCCGCCTTTGTGGCTGCAGCGGCTGCCGTTTTGGACGCTGCTACCGC
AAATCCTCTGCTGTTGGGGCTAACCACAGTAACATCAATACCTACTGGTT
TTGAGTTAAACCTTATGTCATCAATGACAAGGTCCAGGCGCCATTGCGCG
GTCTCCTCAAGATGTCGTTGAGAGGGAAATTTCCACTCTCGTGAAACAGC
TAAGCACAACGGTGGTTGTTTCAGAAGAGTATAAAAGCAATCACGCAATG
CATTGTGACGTCGTGTGGCTCCCAATCCCACCGGGCAAACCATCGCATGG
TAGCCAAGAGGATCAAGAGTTGGAACCGAGGTTACGTTGGAATGAGCACA
AAGAGGGCAAGGCGTGTTGCTAAAGAGCCGCTCACCAAGACGAAGATCAA
TCATAGTCTTCATAATCTCCGGCGGAGTGGTCGGGTTGAAGATAGGGTGA
ATGAATGATGTGAAGCAAAGGGACGCTTCCATTGTACTGACTGATTTCAA
TCGGGCATGTTGCAATCTGTGTGGCTGTGAGCCAGATTGGGGTGGTGCTT
GAAGCAATGCCAGACGTTCAACGATTGAATCATGGTATAGATGTTGCAGC
TTTGAAAGAGACCCATTCTCACCAGCGCGCGCTGACAAGACATCAAATGA
GAACTCGTTCGGCAGTTCATAAGAATCTTTGACGACAGAAGCGATCTGGG
CAAGACGTATAATATGTGAAGGTACTAAACCGTATGGCTGTAAAGCACGT
TGGATTTCTGCGTTAATAAGGGACCAGGCCGCCATGACGGACGAGATGAA
TGCTGCATTCCTCACCCAAGATGCACTGGAAAGGCCGAGGCCTCCTTTAG
AGAACGGGAGGCATGCTCGTCTCCATCCTTGTAGGCTTACTTCTCTGTGG
ATCTGGTGGAACACCCTTCGCTGTTGTTCGTCGAAGTTTTCGACCTCAAC
TTGGGTTAGGTGCGGCGGGGTGGTTCGCATAATGTAAGTTAACTTACAAG
CACCAGCGCAGAAACGGAGTAATGTAAGGGCCATATTCGGGTCATTCAAC
GCAGCAAGAGCTTCGCAAAGCGCTTTTCGCTTTTCTCTACCAGACTTTAG
CAGCTTCTTGATGGCATCTCCGTGGCCCATTGGAGCACCGAGCACATTAA
CAGCCTTATCGTGATTTATTCTTGCTGGAAAGGCAGGAATAGTCGGGCTT
CGCCACCACCACGCAAAAGACTTGCGTAAGTTTGGGACAAAGCCTATTTT
CACGCCTTCGGAGTTGAGCGATTCGATGAAGGCAGTGGCCATAGATCTTT
TGATGAGAATGTTGCCGTCGTCTGCGTAGAAGAGATTGAGGACTGGCTGG
AAACGTTCTTGAAGCTTGAGGACCATGGGATGAAGCGCCAACGCGAAAAG
AAGCGGGCTGAGAGGGTCGCCTTGTTGCGTTCCTGTCTTACTATCGATGA
TGAAATTTCCGAAGCGTAAAGGAATTGCTTCTCGATAGCAGTAGTGAACG
AAACGAGCCATGGATGGGGCGTTTTCAATGACGCTTGTAAGGATAAGTTG
TCGTTCAACTGCATTGAACGCATTAGTAGCATCAATACTGAGTAGGACAA
GGTCTTCTCGTCGCAGTTTGTTGGACACATTGCGAAGAATGTGGACGATC
GCCTCGCTCCCACATGACGTACCTACGCCGAGTTGATGCGGCCGCAGATA
GGACTGTACTGAGGGGTCTCGAGACATGGTTTGGGCTACCATACGTGCGA
TAAACCTACGCCACACGAGTCCTATCGCTAAGGGACGCAGTTTGGATGAA
TTCGGTTTTGGGATGCCAATTAGGCTCCCTGTAGAAAACCACTGTTCAGA
GCCAAGAGGAAGGAGGCCGGCGATGACACAGTTTGCAAACGATGTAACCT
CTTTGAGAATGGGACGGTCAGGAGGTTGACCGCCAGGAGTTGCTGCCAGA
TATTTGAGAAAGATCGGCCGCATTCCGTCTGGTCCGGGTGACGAAGCTTT
GGATGTTTGTTGCAGTGTTCGTCGTACAAAGGCTTCGCCGAGTATAAGTG
GCGGAGGTAGGCTTTGCAGAAGGGCAGGGGCTAGTGGTATAGATGGGGAT
GGGTGCAAATTAGCCAGCGCTGCTGCGGCTTGTTCAGACGGGGTGACTGG
TTGCCCATGCGATCCTAGAATGGCACAGGCTTTTGTGTACTCCCCTGCTA
AGAAGGCCTTTCTGGCTCTCTGCTGTCTATTTGGCGGTGATGGGGACTGT
GATGGAAACCGAAGGTGTGCAATGCAAGCTTCTTCGTAGAGGGTGTTCCA
TTCGCCACGCATTGCCATTTGTACTCTTCGCTTGATTGAGCGGTGAAGAG
AGGGTCGGTTTCTATTGCGGGGTTCTCCACGGCCATTGCGGCGGAAGACG
AGCTTTGGTGTGGCAATAAGGCGAGTTAAGCAATGTTCTCGGAGTGATGT
CGAACGGGAAGTGTTAAAATTATGCAACAGGTGGTAATAGAGTTCAATGT
AGTCCAAGCGCAAGGAGCGGGGAAGAAACTCAATCGTTGAAAGACGTAAA
TCAAGAATCAAAGATATTGGTGGGCAGTCTCCCACAGTAGGGGGCATGGG
CATTACGGACGGCTGTTTTGTTTAAGTTGTGGACCTTCTTTCAATTAATA
TGGGTTTGTACGTTGGTTGTTGGGGCTCCAGGGTAATCAGAGTGGCCCTG
GAGAGGTTGGAATCTGTTTCCAATGGGAGTTGAGCGGTTTAATGCTGGGG
AGGGGTTTTGGATTGGGTCTGGAGGCGTGCTGGGCTGTGGGTTCTCTGTC
ACCGGGCGCGAGATGGAGCAATCCATGGGCGTGGCTGACTGCAGAACCGG
TGTTCCAATGTTACGAGCAACAGGGCGGGATGGCGTTCGGACAGCAGCAG
ATGGGGCAGGCTGCGTTGCACGTGGCGGTAACGGCTGTAGAGTGGAGGAA
GCGGCACGCTGTTTATAAGCATTAAAACCGTGCTGTTCACTCTCACGAAG
AGCGCTGGCAAAGTAATTGCGGGGTCTCCAGAACGTTTCCGGTGACTCTA
AGCGTTTGATTTCTTCCCGTAGTTTTAGGACGAGTTGCAAGAGGTCATCA
CTGGCATTGACGTTGGGAAACAGGTCCAAGAGGTCCTCAATAGGGTCGAC
GGTTATCGTTGGCAGACGCTTGATTCCGCAATGACGGACAGTGACATCAT
GAAATCGGTCATAAGCTGGTTTAATGAGGGGGATGCAGCTCTCAGGTGCA
AAGAGAAGGAAACTGCGCGGATCACTAGTTTTCACCAGTGTCAGTGGCTC
ACGGATGCCGGCTTCAGCCAAACAGCGAGTGATGTTGAATGGGTTTTTCA
TAGGCGCCTGCGTCGTTGCGGTACGCAGAAGAGCGAACTTTTTCGTCTCA
TGTCCAATTGTTTGGACGGCTGTGCGGTATATACGGTCACGAGCCTTCTT
GGATAGCTCAAAGTTTTTAACGTTGAAATCCTTTAGGGCAGACGCGCTTT
CGGTTGTAACTGCGGGCAGACGGGACGATTTGGACTGTTCGGGTTTCGGC
AGGCGACTTTGTAGAACTTGTGCGTACGTAAACTTCGTAGGGTCCGGTTG
CGCGTTAGCGTTGTTGTCTTGCGTGGAGGAGCCATTTGAATTGGGACGGT
CTGGGGCTCGAGTGGTGGCAATCTTTGTGTGAATGTATGAAGCAAAAGCT
CCTATGTCAGCGAAATCGCCGTCAATAAGATGTGCAATGCTGGAGAGTTG
ACCATTCGAGGAACCTAACACGTTGACAAACTTTTTGATGTCGGCAGCTT
TGGAAATGTCCAACTCCGGGCTGAAGATGTTTTTTGAGGTCATGATAAAC
TGAAGAAGCGCATGTACCCACATATCCGCTTTAATCTGATACAGATCTTT
GACGGACTGGGCGGGAGGAGGGACAGGGTTCTGCACCTCCATGGTGAGGG
CGTGGTACGAACAGGAGAGCACTGATATAAAAGAGAGAACAGGTGGTGCA
GGCGAAGGGCGAGGCGGTTTCGGTGAGCGTGAGCGTGAGCGGATAAAGCT
AATGGGAAAGGGTAGAGGAACGGATAGATCGAGACCAGGTATAATGAGCT
TAGCATGATGTGTGTGTATTGTTGA
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Coding sequence (CDS) from alignment at tig00000941_pilon:24005..29429-

>Ggra4578.t1 ID=Ggra4578.t1|Name=Ggra4578.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000941_pilon:24005..29429- (Gracilaria gracilis GNS1m male)
ATGTCGTTAGTTGACACGGGGTCGACCATTTGGCAAAGAAAGCATTGCGA
GGCATTCGTTCCTGGCCTGTCGAATAAATTCTGGGAATCATCCTCGAAGC
ATAACAAAGTAGTGTGTCCGGCACCGATTAATATCAGGGTTGCGAAACGT
CGTCAGCCCTCCTTAGTTCCAATTTCTCAGCTATCTCCGCCAAACAAAGA
TGTCGACTGGATTTTTGTGGACATTGTTGTAAAGACACAAATCGCGGCCA
TGTCGGATGAACTGGAACATGAGGTGCAGGATGATGGCCTAACTCTTGTA
CGAGTAGCACTACGTGACGCGCCAACAGAACTTTCTATAGTTTTATGTGA
TGACCAGGAGATTTCCAGCTTAAATTCTCGGTGGCGCGGAATTGACAAAG
CAACAGATGTCCTGTCCTTTCCGCAAAACGATCCGGATATGGTAGTCCTC
GGCGATATTGTGATAAGCGTCGAAACCGCGTTGAGGCAAGCAGAAGAACG
GCAATGTGATATAAGAGATGAGATTCGCGTGCTCCTAGTGCACGGGTTGC
TTCACCTGATGGGATACGACCACGAAGGTGCTATCGAAGGTGATTGGCTT
GTTATGGCTAAGATGGAGAACCAATTCCTCAAACAGCTGGGGTGGAAGGG
AGAAGGGCTTATTTCTTCAGTACAAGAAGACGCGACAGCTTGCGTGCATA
GTGAAAGTGAACATCCCTGTGAGCTTATCTCTCCACCTTGTCCAGAACTG
AATAAGAACAAGAGTGTATTGTGGGTGGCATACTCTGTATACCGAAGGTA
TAATGAGCTTAGCATGATGTGTGTGTATTGTTGA
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