Ggra4576.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4576.t1
Unique NameGgra4576.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length503
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:18373..19881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003283460.1
PFAMsNMD3
Max annot lvl554915|Amoebozoa
KEGG koko:K07562
KEGG Pathwayko03008,ko03013,map03008,map03013
GOsGO:0000054,GO:0000055,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0015931,GO:0022613,GO:0031503,GO:0033036,GO:0033750,GO:0034613,GO:0042254,GO:0042886,GO:0043021,GO:0043023,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840
Evalue5.31e-165
EggNOG OGsCOG1499@1|root,KOG2613@2759|Eukaryota,3X8E2@554915|Amoebozoa
DescriptionActs as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4576Ggra4576Gracilaria gracilis GNS1m malegenetig00000941_pilon 18373..19881 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4576.t1.start1Ggra4576.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 18373..18375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4576.t1.CDS1Ggra4576.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 18373..19881 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4576.t1.exon1Ggra4576.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 18373..19881 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4576.t1.stop1Ggra4576.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 19879..19881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4576.t1Ggra4576.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 18373..19881 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4576.t1 ID=Ggra4576.t1|Name=Ggra4576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=503bp
MCVNCIRGQVDITENIPKISSIYYCKGCARYLQPPKHWVAAELESKELLT
LCIKRLKGLNKVKLVDAGFQWTEPHSRRIRVRLLVQKEVFHNTILQQEFV
VEFMVEYQQCDMCKRDAADIDEWQAVVQVRQKVIHKRTFLYLEQLIIKHG
AHEDTVGIKAHPDGLDFYFLHRSHAMRFVSFLNHVVPIRTKQADHLVSHD
ANSNTYRYNYTFSVEILPLCKDDIVCLPPKVQMTLGGIGPLVLVTKVSTT
ISLIDPLTLQTAELPGSLYWKYSFPALMSFKQGTEFIVLDTEKTRERKGK
WCLADATVARSVDYGKNDNQHYLSTHLGNFLNPGDLALGYDLGNAVYNEN
LLAGHKRLEVPDFLLFKKTYTKKNRSKRRQWRLKRLNMELDDAVVETGNR
KSNLDPIARMAAEQEDFLQDLEQDQDLRANINIYKDPTRAKPTTSDMDVD
QGNSTVAPQSRNKSGEDHEDDEDYPEVPIEELLEGLNIQDGPEDELDPNS
QT*
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spliced messenger RNA

>Ggra4576.t1 ID=Ggra4576.t1|Name=Ggra4576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00000941_pilon:18373..19881+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGTCAATTGCATTCGTGGTCAGGTCGACATAACAGAGAATATTCC
AAAGATATCAAGTATTTATTACTGCAAAGGCTGTGCAAGATATCTTCAAC
CCCCAAAGCATTGGGTTGCTGCTGAACTGGAATCAAAAGAGCTTCTCACG
CTTTGCATCAAACGTTTAAAAGGGTTGAACAAAGTTAAGCTTGTAGATGC
TGGATTTCAATGGACCGAGCCACACTCGCGTCGAATTCGTGTTAGACTGC
TTGTTCAGAAGGAAGTGTTCCACAATACAATACTACAACAGGAGTTTGTC
GTTGAGTTTATGGTAGAGTACCAGCAGTGTGACATGTGCAAGCGCGACGC
CGCAGACATCGATGAGTGGCAGGCTGTAGTGCAAGTGCGGCAAAAAGTTA
TTCACAAACGAACATTTCTGTACTTGGAGCAGTTGATTATCAAGCATGGT
GCTCACGAAGATACTGTTGGTATAAAGGCCCATCCGGACGGTCTTGACTT
TTACTTTCTTCACAGGAGTCATGCAATGAGGTTCGTGTCGTTCTTAAACC
ATGTCGTTCCCATTCGCACAAAACAAGCTGATCACCTCGTTTCTCATGAT
GCAAACTCAAACACCTATAGATACAATTATACCTTCTCAGTTGAAATTCT
TCCGTTGTGTAAGGATGATATCGTTTGTCTCCCACCGAAGGTACAAATGA
CTCTGGGGGGTATAGGACCTCTTGTACTTGTCACTAAGGTATCCACGACT
ATATCGCTAATCGATCCGCTTACTCTCCAAACAGCCGAATTGCCGGGGTC
GCTGTACTGGAAGTATTCGTTTCCAGCCCTCATGAGCTTTAAGCAGGGTA
CAGAGTTCATTGTTCTCGATACAGAGAAAACGAGAGAACGGAAAGGTAAA
TGGTGCCTTGCAGACGCTACTGTGGCCCGTTCCGTAGACTATGGGAAGAA
TGATAACCAGCATTACCTCTCTACCCATCTTGGCAACTTTCTGAATCCAG
GAGATCTGGCCCTTGGATACGACCTTGGAAACGCTGTTTACAATGAAAAC
CTGTTGGCCGGACACAAACGACTCGAAGTTCCAGATTTTCTGCTTTTCAA
GAAGACGTACACTAAGAAGAACCGTTCGAAACGCCGCCAGTGGAGATTGA
AGCGTTTGAATATGGAGCTCGATGACGCTGTTGTTGAAACAGGCAATAGA
AAGTCAAATCTTGATCCCATAGCGCGGATGGCGGCAGAACAAGAAGATTT
TCTTCAAGATCTTGAGCAAGATCAAGACCTTCGTGCAAACATTAATATAT
ACAAGGATCCCACAAGAGCGAAACCAACAACCTCTGACATGGATGTAGAC
CAGGGTAACAGTACTGTGGCACCACAATCTAGAAACAAGTCTGGGGAAGA
CCATGAGGATGACGAAGACTATCCTGAAGTACCCATTGAAGAGCTGCTTG
AAGGTCTCAATATCCAGGACGGTCCAGAAGATGAACTTGATCCCAACTCC
CAGACATGA
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protein sequence of Ggra4576.t1

>Ggra4576.t1 ID=Ggra4576.t1|Name=Ggra4576.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=503bp
MCVNCIRGQVDITENIPKISSIYYCKGCARYLQPPKHWVAAELESKELLT
LCIKRLKGLNKVKLVDAGFQWTEPHSRRIRVRLLVQKEVFHNTILQQEFV
VEFMVEYQQCDMCKRDAADIDEWQAVVQVRQKVIHKRTFLYLEQLIIKHG
AHEDTVGIKAHPDGLDFYFLHRSHAMRFVSFLNHVVPIRTKQADHLVSHD
ANSNTYRYNYTFSVEILPLCKDDIVCLPPKVQMTLGGIGPLVLVTKVSTT
ISLIDPLTLQTAELPGSLYWKYSFPALMSFKQGTEFIVLDTEKTRERKGK
WCLADATVARSVDYGKNDNQHYLSTHLGNFLNPGDLALGYDLGNAVYNEN
LLAGHKRLEVPDFLLFKKTYTKKNRSKRRQWRLKRLNMELDDAVVETGNR
KSNLDPIARMAAEQEDFLQDLEQDQDLRANINIYKDPTRAKPTTSDMDVD
QGNSTVAPQSRNKSGEDHEDDEDYPEVPIEELLEGLNIQDGPEDELDPNS
QT*
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mRNA from alignment at tig00000941_pilon:18373..19881+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4576.t1 ID=Ggra4576.t1|Name=Ggra4576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00000941_pilon:18373..19881+ (Gracilaria gracilis GNS1m male)
ATGTGTGTCAATTGCATTCGTGGTCAGGTCGACATAACAGAGAATATTCC
AAAGATATCAAGTATTTATTACTGCAAAGGCTGTGCAAGATATCTTCAAC
CCCCAAAGCATTGGGTTGCTGCTGAACTGGAATCAAAAGAGCTTCTCACG
CTTTGCATCAAACGTTTAAAAGGGTTGAACAAAGTTAAGCTTGTAGATGC
TGGATTTCAATGGACCGAGCCACACTCGCGTCGAATTCGTGTTAGACTGC
TTGTTCAGAAGGAAGTGTTCCACAATACAATACTACAACAGGAGTTTGTC
GTTGAGTTTATGGTAGAGTACCAGCAGTGTGACATGTGCAAGCGCGACGC
CGCAGACATCGATGAGTGGCAGGCTGTAGTGCAAGTGCGGCAAAAAGTTA
TTCACAAACGAACATTTCTGTACTTGGAGCAGTTGATTATCAAGCATGGT
GCTCACGAAGATACTGTTGGTATAAAGGCCCATCCGGACGGTCTTGACTT
TTACTTTCTTCACAGGAGTCATGCAATGAGGTTCGTGTCGTTCTTAAACC
ATGTCGTTCCCATTCGCACAAAACAAGCTGATCACCTCGTTTCTCATGAT
GCAAACTCAAACACCTATAGATACAATTATACCTTCTCAGTTGAAATTCT
TCCGTTGTGTAAGGATGATATCGTTTGTCTCCCACCGAAGGTACAAATGA
CTCTGGGGGGTATAGGACCTCTTGTACTTGTCACTAAGGTATCCACGACT
ATATCGCTAATCGATCCGCTTACTCTCCAAACAGCCGAATTGCCGGGGTC
GCTGTACTGGAAGTATTCGTTTCCAGCCCTCATGAGCTTTAAGCAGGGTA
CAGAGTTCATTGTTCTCGATACAGAGAAAACGAGAGAACGGAAAGGTAAA
TGGTGCCTTGCAGACGCTACTGTGGCCCGTTCCGTAGACTATGGGAAGAA
TGATAACCAGCATTACCTCTCTACCCATCTTGGCAACTTTCTGAATCCAG
GAGATCTGGCCCTTGGATACGACCTTGGAAACGCTGTTTACAATGAAAAC
CTGTTGGCCGGACACAAACGACTCGAAGTTCCAGATTTTCTGCTTTTCAA
GAAGACGTACACTAAGAAGAACCGTTCGAAACGCCGCCAGTGGAGATTGA
AGCGTTTGAATATGGAGCTCGATGACGCTGTTGTTGAAACAGGCAATAGA
AAGTCAAATCTTGATCCCATAGCGCGGATGGCGGCAGAACAAGAAGATTT
TCTTCAAGATCTTGAGCAAGATCAAGACCTTCGTGCAAACATTAATATAT
ACAAGGATCCCACAAGAGCGAAACCAACAACCTCTGACATGGATGTAGAC
CAGGGTAACAGTACTGTGGCACCACAATCTAGAAACAAGTCTGGGGAAGA
CCATGAGGATGACGAAGACTATCCTGAAGTACCCATTGAAGAGCTGCTTG
AAGGTCTCAATATCCAGGACGGTCCAGAAGATGAACTTGATCCCAACTCC
CAGACATGA
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Coding sequence (CDS) from alignment at tig00000941_pilon:18373..19881+

>Ggra4576.t1 ID=Ggra4576.t1|Name=Ggra4576.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1509bp|location=Sequence derived from alignment at tig00000941_pilon:18373..19881+ (Gracilaria gracilis GNS1m male)
ATGTGTGTCAATTGCATTCGTGGTCAGGTCGACATAACAGAGAATATTCC
AAAGATATCAAGTATTTATTACTGCAAAGGCTGTGCAAGATATCTTCAAC
CCCCAAAGCATTGGGTTGCTGCTGAACTGGAATCAAAAGAGCTTCTCACG
CTTTGCATCAAACGTTTAAAAGGGTTGAACAAAGTTAAGCTTGTAGATGC
TGGATTTCAATGGACCGAGCCACACTCGCGTCGAATTCGTGTTAGACTGC
TTGTTCAGAAGGAAGTGTTCCACAATACAATACTACAACAGGAGTTTGTC
GTTGAGTTTATGGTAGAGTACCAGCAGTGTGACATGTGCAAGCGCGACGC
CGCAGACATCGATGAGTGGCAGGCTGTAGTGCAAGTGCGGCAAAAAGTTA
TTCACAAACGAACATTTCTGTACTTGGAGCAGTTGATTATCAAGCATGGT
GCTCACGAAGATACTGTTGGTATAAAGGCCCATCCGGACGGTCTTGACTT
TTACTTTCTTCACAGGAGTCATGCAATGAGGTTCGTGTCGTTCTTAAACC
ATGTCGTTCCCATTCGCACAAAACAAGCTGATCACCTCGTTTCTCATGAT
GCAAACTCAAACACCTATAGATACAATTATACCTTCTCAGTTGAAATTCT
TCCGTTGTGTAAGGATGATATCGTTTGTCTCCCACCGAAGGTACAAATGA
CTCTGGGGGGTATAGGACCTCTTGTACTTGTCACTAAGGTATCCACGACT
ATATCGCTAATCGATCCGCTTACTCTCCAAACAGCCGAATTGCCGGGGTC
GCTGTACTGGAAGTATTCGTTTCCAGCCCTCATGAGCTTTAAGCAGGGTA
CAGAGTTCATTGTTCTCGATACAGAGAAAACGAGAGAACGGAAAGGTAAA
TGGTGCCTTGCAGACGCTACTGTGGCCCGTTCCGTAGACTATGGGAAGAA
TGATAACCAGCATTACCTCTCTACCCATCTTGGCAACTTTCTGAATCCAG
GAGATCTGGCCCTTGGATACGACCTTGGAAACGCTGTTTACAATGAAAAC
CTGTTGGCCGGACACAAACGACTCGAAGTTCCAGATTTTCTGCTTTTCAA
GAAGACGTACACTAAGAAGAACCGTTCGAAACGCCGCCAGTGGAGATTGA
AGCGTTTGAATATGGAGCTCGATGACGCTGTTGTTGAAACAGGCAATAGA
AAGTCAAATCTTGATCCCATAGCGCGGATGGCGGCAGAACAAGAAGATTT
TCTTCAAGATCTTGAGCAAGATCAAGACCTTCGTGCAAACATTAATATAT
ACAAGGATCCCACAAGAGCGAAACCAACAACCTCTGACATGGATGTAGAC
CAGGGTAACAGTACTGTGGCACCACAATCTAGAAACAAGTCTGGGGAAGA
CCATGAGGATGACGAAGACTATCCTGAAGTACCCATTGAAGAGCTGCTTG
AAGGTCTCAATATCCAGGACGGTCCAGAAGATGAACTTGATCCCAACTCC
CAGACATGA
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