Ggra4572.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4572.t1
Unique NameGgra4572.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:1075188..1077052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4572Ggra4572Gracilaria gracilis GNS1m malegenetig00000898_pilon 1075188..1077052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4572.t1Ggra4572.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 1075188..1077052 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4572.t1.start1Ggra4572.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 1075188..1075190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4572.t1.CDS1Ggra4572.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 1075188..1075722 +
Ggra4572.t1.CDS2Ggra4572.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 1076709..1077052 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4572.t1.exon1Ggra4572.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 1075188..1075722 +
Ggra4572.t1.exon2Ggra4572.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 1076709..1077052 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4572.t1.intron1Ggra4572.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 1075723..1076708 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4572.t1.stop1Ggra4572.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 1077050..1077052 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4572.t1 ID=Ggra4572.t1|Name=Ggra4572.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=293bp
MEFSSDSNSRHNEQPQTSPARTPSASDNSDIRISRIPLLPSTPSTPATPH
SSTEMNPFQEHARQPPQSGASQAETSTPASGYIGGFASTTLPQSGYNTNA
PTPVNVAAWNSAHAVPKLANPSGWIARESLMKLDPRTDGGWYYSRAPRFN
PTAVRNDALIDFYTVNGLLPGGIARDVVNEDDPMVDNAVGNPVAGVQTVA
VGVAANPGAGAVAAAPVAPVEWGVGPPQGNPDPQVVAMRNQLLNLRVPVP
PDMYDLGQLLALGAQMFANQPPGGPPNAGGAGPAAGLPYSQL*
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spliced messenger RNA

>Ggra4572.t1 ID=Ggra4572.t1|Name=Ggra4572.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000898_pilon:1075188..1077052+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTTTCCAGTGATTCGAACTCTCGTCACAACGAGCAACCGCAAAC
CTCGCCTGCGAGAACTCCTTCTGCCTCTGACAACTCAGACATTCGGATTT
CCCGAATTCCTCTACTTCCTTCGACACCGTCGACTCCTGCGACTCCGCAC
TCGAGTACCGAAATGAATCCTTTCCAGGAACACGCTCGACAACCTCCCCA
GTCTGGGGCTTCTCAAGCTGAAACTTCAACTCCCGCATCCGGGTACATCG
GCGGGTTCGCCTCTACAACTCTTCCGCAGAGCGGCTATAACACGAACGCA
CCGACTCCGGTTAACGTTGCGGCTTGGAACTCGGCGCACGCGGTGCCAAA
ACTGGCGAACCCTTCGGGGTGGATTGCGCGCGAGTCATTGATGAAATTGG
ATCCGAGAACAGACGGAGGATGGTACTATTCCAGAGCTCCCAGGTTTAAC
CCGACGGCGGTTCGCAACGATGCGTTAATCGATTTCTATACCGTGAACGG
TTTGCTGCCTGGCGGCATTGCACGCGATGTCGTGAacgaggatgatccAA
TGGTGGATAACGCAGTCGGAAACCCAGTCGCGGGTGTTCAGACGGTAGCG
GTAGGAGTTGCGGCGAATCCAGGTGCTGGAGCAGTGGCGGCGGCGCCAGT
AGCTCCCGTAGAATGGGGAGTCGGCCCTCCACAGGGTAACCCTGACCCTC
AGGTGGTGGCGATGCGTAATCAGCTCCTCAATCTTAGAGTCCCGGTTCCC
CCGGATATGTACGACCTCGGCCAACTATTGGCGTTAGGCGCGCAGATGTT
CGCAAATCAGCCTCCGGGCGGCCCTCCCAATGCTGGAGGTGCCGGCCCTG
CGGCAGGCTTGCCGTACTCCCAACTCTAG
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protein sequence of Ggra4572.t1

>Ggra4572.t1 ID=Ggra4572.t1|Name=Ggra4572.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=293bp
MEFSSDSNSRHNEQPQTSPARTPSASDNSDIRISRIPLLPSTPSTPATPH
SSTEMNPFQEHARQPPQSGASQAETSTPASGYIGGFASTTLPQSGYNTNA
PTPVNVAAWNSAHAVPKLANPSGWIARESLMKLDPRTDGGWYYSRAPRFN
PTAVRNDALIDFYTVNGLLPGGIARDVVNEDDPMVDNAVGNPVAGVQTVA
VGVAANPGAGAVAAAPVAPVEWGVGPPQGNPDPQVVAMRNQLLNLRVPVP
PDMYDLGQLLALGAQMFANQPPGGPPNAGGAGPAAGLPYSQL*
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mRNA from alignment at tig00000898_pilon:1075188..1077052+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4572.t1 ID=Ggra4572.t1|Name=Ggra4572.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1865bp|location=Sequence derived from alignment at tig00000898_pilon:1075188..1077052+ (Gracilaria gracilis GNS1m male)
ATGGAGTTTTCCAGTGATTCGAACTCTCGTCACAACGAGCAACCGCAAAC
CTCGCCTGCGAGAACTCCTTCTGCCTCTGACAACTCAGACATTCGGATTT
CCCGAATTCCTCTACTTCCTTCGACACCGTCGACTCCTGCGACTCCGCAC
TCGAGTACCGAAATGAATCCTTTCCAGGAACACGCTCGACAACCTCCCCA
GTCTGGGGCTTCTCAAGCTGAAACTTCAACTCCCGCATCCGGGTACATCG
GCGGGTTCGCCTCTACAACTCTTCCGCAGAGCGGCTATAACACGAACGCA
CCGACTCCGGTTAACGTTGCGGCTTGGAACTCGGCGCACGCGGTGCCAAA
ACTGGCGAACCCTTCGGGGTGGATTGCGCGCGAGTCATTGATGAAATTGG
ATCCGAGAACAGACGGAGGATGGTACTATTCCAGAGCTCCCAGGTTTAAC
CCGACGGCGGTTCGCAACGATGCGTTAATCGATTTCTATACCGTGAACGG
TTTGCTGCCTGGCGGCATTGCACGCGATGTCGTGAGTTCCTGGGACTGGA
GAAACCGCGTGGCGGTACCAACCCACTTGATTGGGCGGCGTAGAAGACAC
TCCCGATGAAGCCAGAGCTTCAATGGCAAGGGTTGCTTACTTCCGTTTTG
GAACGTTGCTCCTTCCCGGAGATTATTCCACCCTCGTACGGGTTTGATCT
GTCTCGCTTCCGTACTTACAGAGAAATTCAATATGGCGCAAACCTTGCGA
ACTTCGATGCGAACGAACCATTACCTGACGAAATCCCCGAGGATCTTCTA
CTGTTCCACAGGCCAGTCATCAGAGCGGAATTTTGTTTTCTGCGACGCCC
TTCCGAAAGGGGAAGTTTCTTCGACCGACTGCGAAACGAACGCAAGTGGA
GATCCGGGTTCgggtatttgattcctcaccagaacatcgaggtcgagaac
ctccgtcccgaggcactagtgggtagattcgcgccgttaccggcttggtg
gaccatgtacgaggtccctcgcggttgtttcgcggaactgccgctgtgca
tcttctatgtaggatctcgcatgcttgcgaacccgaattacaactactgg
atgttgttcatcgccgaatgggctgcccgcgttcccgcgtttcccctctg
ggaggcttacgatcaacaccgaatctggtacattcctccaaagttgcgga
tcgtcatgagggcactcgacctgtacaccccgctgggttccgaggcgaat
gtgatcgaactagagcacatcctcgaactcattgatgagactgactggaa
ttccgttcctgcggagaatgtcccaaggggaactcaggcgtcattcgaca
gatcacctcgacgcaggcatccgggtgccggagacttcatctactacaac
tcgtgggagagcgtccggatttcccgggctcaagcgcatgcgctacgaca
ggttcatcgggccgtaccgactggtcacccaactgggttcatgttctccg
acgcatactacccctcaatagacgaggatgatccAATGGTGGATAACGCA
GTCGGAAACCCAGTCGCGGGTGTTCAGACGGTAGCGGTAGGAGTTGCGGC
GAATCCAGGTGCTGGAGCAGTGGCGGCGGCGCCAGTAGCTCCCGTAGAAT
GGGGAGTCGGCCCTCCACAGGGTAACCCTGACCCTCAGGTGGTGGCGATG
CGTAATCAGCTCCTCAATCTTAGAGTCCCGGTTCCCCCGGATATGTACGA
CCTCGGCCAACTATTGGCGTTAGGCGCGCAGATGTTCGCAAATCAGCCTC
CGGGCGGCCCTCCCAATGCTGGAGGTGCCGGCCCTGCGGCAGGCTTGCCG
TACTCCCAACTCTAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:1075188..1077052+

>Ggra4572.t1 ID=Ggra4572.t1|Name=Ggra4572.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00000898_pilon:1075188..1077052+ (Gracilaria gracilis GNS1m male)
ATGGAGTTTTCCAGTGATTCGAACTCTCGTCACAACGAGCAACCGCAAAC
CTCGCCTGCGAGAACTCCTTCTGCCTCTGACAACTCAGACATTCGGATTT
CCCGAATTCCTCTACTTCCTTCGACACCGTCGACTCCTGCGACTCCGCAC
TCGAGTACCGAAATGAATCCTTTCCAGGAACACGCTCGACAACCTCCCCA
GTCTGGGGCTTCTCAAGCTGAAACTTCAACTCCCGCATCCGGGTACATCG
GCGGGTTCGCCTCTACAACTCTTCCGCAGAGCGGCTATAACACGAACGCA
CCGACTCCGGTTAACGTTGCGGCTTGGAACTCGGCGCACGCGGTGCCAAA
ACTGGCGAACCCTTCGGGGTGGATTGCGCGCGAGTCATTGATGAAATTGG
ATCCGAGAACAGACGGAGGATGGTACTATTCCAGAGCTCCCAGGTTTAAC
CCGACGGCGGTTCGCAACGATGCGTTAATCGATTTCTATACCGTGAACGG
TTTGCTGCCTGGCGGCATTGCACGCGATGTCGTGAacgaggatgatccAA
TGGTGGATAACGCAGTCGGAAACCCAGTCGCGGGTGTTCAGACGGTAGCG
GTAGGAGTTGCGGCGAATCCAGGTGCTGGAGCAGTGGCGGCGGCGCCAGT
AGCTCCCGTAGAATGGGGAGTCGGCCCTCCACAGGGTAACCCTGACCCTC
AGGTGGTGGCGATGCGTAATCAGCTCCTCAATCTTAGAGTCCCGGTTCCC
CCGGATATGTACGACCTCGGCCAACTATTGGCGTTAGGCGCGCAGATGTT
CGCAAATCAGCCTCCGGGCGGCCCTCCCAATGCTGGAGGTGCCGGCCCTG
CGGCAGGCTTGCCGTACTCCCAACTCTAG
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