Ggra4570.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4570.t1
Unique NameGgra4570.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length191
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:1065091..1065716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SLH0
PFAMsClat_adaptor_s
Max annot lvl3041|Chlorophyta
KEGG koko:K12394
KEGG Pathwayko04142,map04142
Evalue9.42e-31
EggNOG OGsCOG5030@1|root,KOG0934@2759|Eukaryota,37JP3@33090|Viridiplantae,34KII@3041|Chlorophyta
DescriptionBelongs to the adaptor complexes small subunit family
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4570Ggra4570Gracilaria gracilis GNS1m malegenetig00000898_pilon 1065091..1065716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4570.t1Ggra4570.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 1065091..1065716 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4570.t1.start1Ggra4570.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 1065091..1065093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4570.t1.CDS1Ggra4570.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 1065091..1065411 +
Ggra4570.t1.CDS2Ggra4570.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 1065465..1065716 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4570.t1.exon1Ggra4570.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 1065091..1065411 +
Ggra4570.t1.exon2Ggra4570.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 1065465..1065716 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4570.t1.intron1Ggra4570.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 1065412..1065464 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4570.t1.stop1Ggra4570.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 1065714..1065716 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4570.t1 ID=Ggra4570.t1|Name=Ggra4570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=191bp
MVINREGKVRLSKWYESVTDTERAATLRDIQSLVLTSSSKMCNVVDRNAN
KLVYERYASLYFISCFDADDNKLMMMEFLHVFVEVLDKYIRNLRELELIF
HFTRAHTAHMAKLRTLTLVSLEYARSELQYARLREALAVSTIRRVEDVVI
DAVYAGLLRARMNQHAGTVEVSAVEGRDVLIPDGIEPIVN*
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spliced messenger RNA

>Ggra4570.t1 ID=Ggra4570.t1|Name=Ggra4570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00000898_pilon:1065091..1065716+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGATCAACCGCGAAGGAAAGGTACGGCTTTCCAAGTGGTACGAGTC
GGTCACCGACACCGAACGCGCAGCAACCCTTCGCGACATACAATCGCTGG
TACTCACAAGCAGTTCAAAGATGTGCAACGTGGTCGATCGCAATGCGAAC
AAACTCGTGTACGAACGTTACGCCAGTCTATATTTTATCTCCTGCTTCGA
CGCAGACGATAACAAACTGATGATGATGGAGTTTTTACATGTGTTTGTGG
AGGTTCTGGACAAGTACATTAGAAACTTGCGTGAACTTGAATTGATCTTC
CACTTTACGAGGGCACACACGGCGCACATGGCCAAGCTGCGCACGCTCAC
GCTGGTGTCGCTGGAGTACGCGCGCAGCGAGTTGCAGTACGCGCGGCTGC
GTGAGGCGCTGGCCGTGAGTACCATTCGACGGGTTGAGGACGTGGTGATT
GACGCCGTATACGCCGGTCTACTTCGCGCAAGGATGAATCAACACGCAGG
CACGGTAGAGGTATCAGCGGTGGAAGGGCGTGACGTTTTGATTCCGGACG
GCATCGAACCGATAGTGAACTAG
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protein sequence of Ggra4570.t1

>Ggra4570.t1 ID=Ggra4570.t1|Name=Ggra4570.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=191bp
MVINREGKVRLSKWYESVTDTERAATLRDIQSLVLTSSSKMCNVVDRNAN
KLVYERYASLYFISCFDADDNKLMMMEFLHVFVEVLDKYIRNLRELELIF
HFTRAHTAHMAKLRTLTLVSLEYARSELQYARLREALAVSTIRRVEDVVI
DAVYAGLLRARMNQHAGTVEVSAVEGRDVLIPDGIEPIVN*
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mRNA from alignment at tig00000898_pilon:1065091..1065716+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4570.t1 ID=Ggra4570.t1|Name=Ggra4570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=626bp|location=Sequence derived from alignment at tig00000898_pilon:1065091..1065716+ (Gracilaria gracilis GNS1m male)
ATGGTGATCAACCGCGAAGGAAAGGTACGGCTTTCCAAGTGGTACGAGTC
GGTCACCGACACCGAACGCGCAGCAACCCTTCGCGACATACAATCGCTGG
TACTCACAAGCAGTTCAAAGATGTGCAACGTGGTCGATCGCAATGCGAAC
AAACTCGTGTACGAACGTTACGCCAGTCTATATTTTATCTCCTGCTTCGA
CGCAGACGATAACAAACTGATGATGATGGAGTTTTTACATGTGTTTGTGG
AGGTTCTGGACAAGTACATTAGAAACTTGCGTGAACTTGAATTGATCTTC
CACTTTACGAGGGCACACACGGTACCGCCCAAGACTATCACCGAAACCGC
GCCGTATTCCCGCCGCTCTCGAAGGCGCACATGGCCAAGCTGCGCACGCT
CACGCTGGTGTCGCTGGAGTACGCGCGCAGCGAGTTGCAGTACGCGCGGC
TGCGTGAGGCGCTGGCCGTGAGTACCATTCGACGGGTTGAGGACGTGGTG
ATTGACGCCGTATACGCCGGTCTACTTCGCGCAAGGATGAATCAACACGC
AGGCACGGTAGAGGTATCAGCGGTGGAAGGGCGTGACGTTTTGATTCCGG
ACGGCATCGAACCGATAGTGAACTAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:1065091..1065716+

>Ggra4570.t1 ID=Ggra4570.t1|Name=Ggra4570.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=573bp|location=Sequence derived from alignment at tig00000898_pilon:1065091..1065716+ (Gracilaria gracilis GNS1m male)
ATGGTGATCAACCGCGAAGGAAAGGTACGGCTTTCCAAGTGGTACGAGTC
GGTCACCGACACCGAACGCGCAGCAACCCTTCGCGACATACAATCGCTGG
TACTCACAAGCAGTTCAAAGATGTGCAACGTGGTCGATCGCAATGCGAAC
AAACTCGTGTACGAACGTTACGCCAGTCTATATTTTATCTCCTGCTTCGA
CGCAGACGATAACAAACTGATGATGATGGAGTTTTTACATGTGTTTGTGG
AGGTTCTGGACAAGTACATTAGAAACTTGCGTGAACTTGAATTGATCTTC
CACTTTACGAGGGCACACACGGCGCACATGGCCAAGCTGCGCACGCTCAC
GCTGGTGTCGCTGGAGTACGCGCGCAGCGAGTTGCAGTACGCGCGGCTGC
GTGAGGCGCTGGCCGTGAGTACCATTCGACGGGTTGAGGACGTGGTGATT
GACGCCGTATACGCCGGTCTACTTCGCGCAAGGATGAATCAACACGCAGG
CACGGTAGAGGTATCAGCGGTGGAAGGGCGTGACGTTTTGATTCCGGACG
GCATCGAACCGATAGTGAACTAG
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