Ggra4568.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4568.t1
Unique Name	Ggra4568.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	518

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:1048827..1051608 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4568	Ggra4568	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 1048827..1051608 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4568.t1	Ggra4568.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 1048827..1051608 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4568.t1.start1	Ggra4568.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 1048827..1048829 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4568.t1.CDS1	Ggra4568.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 1048827..1049609 +
Ggra4568.t1.CDS2	Ggra4568.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 1050838..1051608 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4568.t1.exon1	Ggra4568.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 1048827..1049609 +
Ggra4568.t1.exon2	Ggra4568.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 1050838..1051608 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4568.t1.intron1	Ggra4568.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000898_pilon 1049610..1050837 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4568.t1.stop1	Ggra4568.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 1051606..1051608 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:1048827..1051608+
coding sequence from alignment at tig00000898_pilon:1048827..1051608+

mRNA sequence

>Ggra4568.t1 ID=Ggra4568.t1|Name=Ggra4568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=518bp
MEKSKQHDTTLPEYEFTEDPKDLMLSVMKWKLYAVENAASKSNQVQPVTD
APPTILANPAAAQSVPSPANPLDNLPSPDDFFNPASEKPNKKRRITVGGV
SIIDEQGKDTSNSPVNLGPYPGKGLSIPTITVNELLGGTILQSLVRKRVN
LKQAVAGLKWSRGANGEVMALEAEACRLARILNLSLLKFDTMQSALETSE
WMEVALKRLYAIIFVESSIQLRNATRAQAWRVAIPILEVYPSAQNLIPEL
ESRLNRQFAAEDTISVHQKARDALCLHTIDDINFILHDWTNREAETFQRL
CYNKLENYGLPIKSSKSCPIGKLVHTVIPITGWKIDLANRIAYPDPTKTL
QTICQALGLSPTAETDINMIESLTGKIIWCALGKRPLLSVLLNTYRYIHD
DSSGNPSEVLRARPVDELHRLSGLLPLAVVDLRKQFSNIVLCFDASPDAG
ALVYTELDDSDTQKFLTQASIPDTKGRAAAIKAFVGSKPWTTAFVHRWRR
KSHIDALEATTAFLGLE*

spliced messenger RNA

>Ggra4568.t1 ID=Ggra4568.t1|Name=Ggra4568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000898_pilon:1048827..1051608+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAAAGCAAACAGCATGACACCACTCTTCCTGAATATGAATTCAC
CGAGGATCCAAAGGACCTCATGTTGAGTGTGATGAAGTGGAAGTTATATG
CTGTCGAAAACGCAGCCTCCAAATCGAATCAGGTCCAACCAGTTACCGAC
GCCCCACCCACAATCTTAGCCAATCCCGCCGCGGCTCAAAGCGTACCGTC
GCCCGCAAACCCTCTCGATAACCTACCCTCACCTGACGATTTCTTCAACC
CTGCTTCTGAAAAACCGAACAAGAAGCGACGTATTACAGTCGGTGGGGTC
TCTATTATAGACGAGCAAGGGAAGGATACCTCCAACAGCCCAGTAAACCT
TGGCCCCTACCCGGGAAAAGGGCTGTCCATTCCAACAATCACCGTCAACG
AATTGTTGGGAGGTACAATCTTGCAATCACTCGTAAGAAAAAGAGTCAAC
CTCAAGCAAGCCGTGGCAGGATTGAAGTGGTCTCGAGGAGCAAACGGAGA
AGTTATGGCCTTAGAGGCCGAGGCCTGCAGACTCGCGCGAATCCTTAACC
TCTCCCTTCTCAAATTCGACACGATGCAATCAGCTCTCGAGACCTCAGAG
TGGATGGAGGTCGCATTGAAAAGGCTGTACGCAATAATATTTGTAGAGTC
CTCAATCCAGCTACGAAATGCCACTCGAGCTCAGGCTTGGAGAGTGGCGA
TACCAATCCTGGAAGTCTACCCATCTGCACAAAATCTAATCCCAGAGTTG
GAGAGTCGTCTCAACCGCCAATTTGCAGCCGAGGACACCATCTCCGTACA
CCAGAAGGCACGAGATGCGCTATGCCTGCATACCATTGACGACATCAATT
TTATCCTCCATGACTGGACAAACCGAGAGGCAGAAACCTTCCAAAGACTG
TGTTACAATAAGCTCGAAAACTATGGCCTCCCCATCAAGAGCTCCAAGTC
CTGTCCGATAGGAAAGCTTGTCCATACAGTAATCCCAATCACTGGATGGA
AGATCGATCTCGCCAATCGCATCGCCTATCCCGACCCTACCAAAACACTT
CAAACTATATGTCAGGCGTTGGGTCTCAGTCCAACAGCAGAGACGGACAT
CAACATGATCGAATCACTAACAGGGAAGATTATTTGGTGCGCCCTTGGCA
AACGACCGCTCCTCTCGGTGCTGCTCAACACATATCGATATATACACGAC
GACAGCTCCGGAAACCCTTCGGAAGTACTGCGAGCCCGTCCCGTTGACGA
GCTTCACAGGCTGTCAGGCCTACTGCCTCTCGCAGTAGTAGACTTGCGAA
AGCAATTCTCTAACATAGTTCTGTGCTTCGACGCCTCCCCGGATGCTGGC
GCCCTTGTGTACACCGAGCTCGATGACTCCGATACTCAGAAATTCTTAAC
CCAAGCTTCCATACCGGACACCAAAGGAAGAGCAGCCGCCATCAAGGCTT
TTGTCGGAAGCAAACCGTGGACGACTGCATTCGTTCACCGGTGGCGTCGC
AAAAGCCACATAGACGCGCTGGAAGCGACAACAGCTTTTCTAGGGCTAGA
GTAG

protein sequence of Ggra4568.t1

>Ggra4568.t1 ID=Ggra4568.t1|Name=Ggra4568.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=518bp
MEKSKQHDTTLPEYEFTEDPKDLMLSVMKWKLYAVENAASKSNQVQPVTD
APPTILANPAAAQSVPSPANPLDNLPSPDDFFNPASEKPNKKRRITVGGV
SIIDEQGKDTSNSPVNLGPYPGKGLSIPTITVNELLGGTILQSLVRKRVN
LKQAVAGLKWSRGANGEVMALEAEACRLARILNLSLLKFDTMQSALETSE
WMEVALKRLYAIIFVESSIQLRNATRAQAWRVAIPILEVYPSAQNLIPEL
ESRLNRQFAAEDTISVHQKARDALCLHTIDDINFILHDWTNREAETFQRL
CYNKLENYGLPIKSSKSCPIGKLVHTVIPITGWKIDLANRIAYPDPTKTL
QTICQALGLSPTAETDINMIESLTGKIIWCALGKRPLLSVLLNTYRYIHD
DSSGNPSEVLRARPVDELHRLSGLLPLAVVDLRKQFSNIVLCFDASPDAG
ALVYTELDDSDTQKFLTQASIPDTKGRAAAIKAFVGSKPWTTAFVHRWRR
KSHIDALEATTAFLGLE*

mRNA from alignment at tig00000898_pilon:1048827..1051608+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4568.t1 ID=Ggra4568.t1|Name=Ggra4568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2782bp|location=Sequence derived from alignment at tig00000898_pilon:1048827..1051608+ (Gracilaria gracilis GNS1m male)
ATGGAGAAAAGCAAACAGCATGACACCACTCTTCCTGAATATGAATTCAC
CGAGGATCCAAAGGACCTCATGTTGAGTGTGATGAAGTGGAAGTTATATG
CTGTCGAAAACGCAGCCTCCAAATCGAATCAGGTCCAACCAGTTACCGAC
GCCCCACCCACAATCTTAGCCAATCCCGCCGCGGCTCAAAGCGTACCGTC
GCCCGCAAACCCTCTCGATAACCTACCCTCACCTGACGATTTCTTCAACC
CTGCTTCTGAAAAACCGAACAAGAAGCGACGTATTACAGTCGGTGGGGTC
TCTATTATAGACGAGCAAGGGAAGGATACCTCCAACAGCCCAGTAAACCT
TGGCCCCTACCCGGGAAAAGGGCTGTCCATTCCAACAATCACCGTCAACG
AATTGTTGGGAGGTACAATCTTGCAATCACTCGTAAGAAAAAGAGTCAAC
CTCAAGCAAGCCGTGGCAGGATTGAAGTGGTCTCGAGGAGCAAACGGAGA
AGTTATGGCCTTAGAGGCCGAGGCCTGCAGACTCGCGCGAATCCTTAACC
TCTCCCTTCTCAAATTCGACACGATGCAATCAGCTCTCGAGACCTCAGAG
TGGATGGAGGTCGCATTGAAAAGGCTGTACGCAATAATATTTGTAGAGTC
CTCAATCCAGCTACGAAATGCCACTCGAGCTCAGGCTTGGAGAGTGGCGA
TACCAATCCTGGAAGTCTACCCATCTGCACAAAATCTAATCCCAGAGTTG
GAGAGTCGTCTCAACCGCCAATTTGCAGCCGAGGTGAAAACCATGACAGC
GTTCCGCTCCTCGAGAAATCGAGGCAACAACCATAACGCAACTCACCGAC
GGGGTCAAAATCTCTCACCCAAACAGATGGAAAGGCACAGATAACACGAA
CTAGGCCCAGAACATTCCCTCTGCCAATCTCCCCGGCGTTCCCAGACCAT
TCTGTTCTCGGAAACATTATAACTGCTCTGAATCACTTGTACCTTGGACC
AATCCAAAGCCAAAGCAACTTCTCAACGCAAAACTACCACACTCAGCAGG
CGGTGACATCTATCAAATCAAGATCAACCCTATGGCTGCAGTGCCTCGCA
ACCAACACCCACGACGACGACCATGGCTGCATTTCTAAGCCGCCACACAT
AGTCACCACATCTGAGGATCTGGGTCCTGAATGGAAGTCTGTGTTCGACG
AATATATGGAGAGCAATGAAGGCCATGTTCTCAGCAGAGGCGCGTTCACC
CCGCTGAACGCAACGCGAATTGACTTGCCAAAGAACAACATATCCAGAAA
GAGCATCTTCCAAATAGAACTACTGCAACACGACTCTGATGCACTTTTCT
CCTGGAGAAACTTCCAAAACCTCTGTCAATCGGAGACCGCGCCCTTATCG
CCCACCTCAGCCCCTaaagttctcggctcgcaagtccagtacgcgaatct
tctgctcaaggctcacgaagctaacatgctctcctggtcgattgttaagg
aagagagcgacatataccggcaaattgcagatcgaataaccatgtactcc
ttctctgtcaaaaaggacgaacacagggacagacttatcagttggcccaa
ggagcaaaacaacattttcccagacccaccttacacctacctcctctgcc
cggacgtgttttccaagtacattccggaacccggagcgctctcttccttc
taccttgacatggagaacatgttgcacaacattccgctccccctggatat
ggccaagatcttccctctcgagaagctaccattatcggcccttcccctag
agcttgcggaaaagttcgcaaggagcttgacctcgctccaaactccggcc
cacttctgcatccactccagaaaaccctgccaatgggctataagtgggca
gtgcacatttcccacACAGCTGCACGAAGGATAATTCAACGGAGCTTCTG
GTTGTTCACAAAAAACCCCCATTGCCCAAGACCTCCCTCGCGCCTTTTGT
GTTTCTTAAAGGACACCATCTCCGTACACCAGAAGGCACGAGATGCGCTA
TGCCTGCATACCATTGACGACATCAATTTTATCCTCCATGACTGGACAAA
CCGAGAGGCAGAAACCTTCCAAAGACTGTGTTACAATAAGCTCGAAAACT
ATGGCCTCCCCATCAAGAGCTCCAAGTCCTGTCCGATAGGAAAGCTTGTC
CATACAGTAATCCCAATCACTGGATGGAAGATCGATCTCGCCAATCGCAT
CGCCTATCCCGACCCTACCAAAACACTTCAAACTATATGTCAGGCGTTGG
GTCTCAGTCCAACAGCAGAGACGGACATCAACATGATCGAATCACTAACA
GGGAAGATTATTTGGTGCGCCCTTGGCAAACGACCGCTCCTCTCGGTGCT
GCTCAACACATATCGATATATACACGACGACAGCTCCGGAAACCCTTCGG
AAGTACTGCGAGCCCGTCCCGTTGACGAGCTTCACAGGCTGTCAGGCCTA
CTGCCTCTCGCAGTAGTAGACTTGCGAAAGCAATTCTCTAACATAGTTCT
GTGCTTCGACGCCTCCCCGGATGCTGGCGCCCTTGTGTACACCGAGCTCG
ATGACTCCGATACTCAGAAATTCTTAACCCAAGCTTCCATACCGGACACC
AAAGGAAGAGCAGCCGCCATCAAGGCTTTTGTCGGAAGCAAACCGTGGAC
GACTGCATTCGTTCACCGGTGGCGTCGCAAAAGCCACATAGACGCGCTGG
AAGCGACAACAGCTTTTCTAGGGCTAGAGTAG

Coding sequence (CDS) from alignment at tig00000898_pilon:1048827..1051608+

>Ggra4568.t1 ID=Ggra4568.t1|Name=Ggra4568.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1554bp|location=Sequence derived from alignment at tig00000898_pilon:1048827..1051608+ (Gracilaria gracilis GNS1m male)
ATGGAGAAAAGCAAACAGCATGACACCACTCTTCCTGAATATGAATTCAC
CGAGGATCCAAAGGACCTCATGTTGAGTGTGATGAAGTGGAAGTTATATG
CTGTCGAAAACGCAGCCTCCAAATCGAATCAGGTCCAACCAGTTACCGAC
GCCCCACCCACAATCTTAGCCAATCCCGCCGCGGCTCAAAGCGTACCGTC
GCCCGCAAACCCTCTCGATAACCTACCCTCACCTGACGATTTCTTCAACC
CTGCTTCTGAAAAACCGAACAAGAAGCGACGTATTACAGTCGGTGGGGTC
TCTATTATAGACGAGCAAGGGAAGGATACCTCCAACAGCCCAGTAAACCT
TGGCCCCTACCCGGGAAAAGGGCTGTCCATTCCAACAATCACCGTCAACG
AATTGTTGGGAGGTACAATCTTGCAATCACTCGTAAGAAAAAGAGTCAAC
CTCAAGCAAGCCGTGGCAGGATTGAAGTGGTCTCGAGGAGCAAACGGAGA
AGTTATGGCCTTAGAGGCCGAGGCCTGCAGACTCGCGCGAATCCTTAACC
TCTCCCTTCTCAAATTCGACACGATGCAATCAGCTCTCGAGACCTCAGAG
TGGATGGAGGTCGCATTGAAAAGGCTGTACGCAATAATATTTGTAGAGTC
CTCAATCCAGCTACGAAATGCCACTCGAGCTCAGGCTTGGAGAGTGGCGA
TACCAATCCTGGAAGTCTACCCATCTGCACAAAATCTAATCCCAGAGTTG
GAGAGTCGTCTCAACCGCCAATTTGCAGCCGAGGACACCATCTCCGTACA
CCAGAAGGCACGAGATGCGCTATGCCTGCATACCATTGACGACATCAATT
TTATCCTCCATGACTGGACAAACCGAGAGGCAGAAACCTTCCAAAGACTG
TGTTACAATAAGCTCGAAAACTATGGCCTCCCCATCAAGAGCTCCAAGTC
CTGTCCGATAGGAAAGCTTGTCCATACAGTAATCCCAATCACTGGATGGA
AGATCGATCTCGCCAATCGCATCGCCTATCCCGACCCTACCAAAACACTT
CAAACTATATGTCAGGCGTTGGGTCTCAGTCCAACAGCAGAGACGGACAT
CAACATGATCGAATCACTAACAGGGAAGATTATTTGGTGCGCCCTTGGCA
AACGACCGCTCCTCTCGGTGCTGCTCAACACATATCGATATATACACGAC
GACAGCTCCGGAAACCCTTCGGAAGTACTGCGAGCCCGTCCCGTTGACGA
GCTTCACAGGCTGTCAGGCCTACTGCCTCTCGCAGTAGTAGACTTGCGAA
AGCAATTCTCTAACATAGTTCTGTGCTTCGACGCCTCCCCGGATGCTGGC
GCCCTTGTGTACACCGAGCTCGATGACTCCGATACTCAGAAATTCTTAAC
CCAAGCTTCCATACCGGACACCAAAGGAAGAGCAGCCGCCATCAAGGCTT
TTGTCGGAAGCAAACCGTGGACGACTGCATTCGTTCACCGGTGGCGTCGC
AAAAGCCACATAGACGCGCTGGAAGCGACAACAGCTTTTCTAGGGCTAGA
GTAG