Ggra4567.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4567.t1
Unique NameGgra4567.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:1046220..1047617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704023.1
PFAMsThioredoxin
Max annot lvl2759|Eukaryota
Evalue2.72e-20
EggNOG OGsCOG0526@1|root,KOG1672@2759|Eukaryota
Descriptionqueuosine biosynthetic process
COG categoryCO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4567Ggra4567Gracilaria gracilis GNS1m malegenetig00000898_pilon 1046220..1047617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4567.t1Ggra4567.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 1046220..1047617 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4567.t1.stop1Ggra4567.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 1046220..1046222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4567.t1.CDS1Ggra4567.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 1046220..1046711 -
Ggra4567.t1.CDS2Ggra4567.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 1046815..1047405 -
Ggra4567.t1.CDS3Ggra4567.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 1047528..1047617 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4567.t1.exon1Ggra4567.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 1046220..1046711 -
Ggra4567.t1.exon2Ggra4567.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 1046815..1047405 -
Ggra4567.t1.exon3Ggra4567.t1.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 1047528..1047617 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4567.t1.intron1Ggra4567.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 1046712..1046814 -
Ggra4567.t1.intron2Ggra4567.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 1047406..1047527 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4567.t1.start1Ggra4567.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 1047615..1047617 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4567.t1 ID=Ggra4567.t1|Name=Ggra4567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=391bp
MRSLAPEEPARSLTSPLPKLFRPEDDPLADSTNSPLLPPPPLPQKHPFND
SIVLANNEKSTWLQDVQTTWEVDTVRQSGILSTSKLGLELGDYFKTLKRF
VLEEEQQQPQDDDAPDTVPYHAPHNECPGDSSDEEDSHHVLPNGSGHMSQ
ISPEAAAPPVAPNINVAPSLHSPAPGSTNGPSLMPQPSGLMPLIPPTMSA
NLDLSTAYVPTLSSPFVPQLLPMSIITMKKDAEEKAVWRRNGHGTVHRIT
EKEFFPRAKASKRMVSIMFRPGSNRCAEELFEHIGRIAQRHLETLFTSMD
VEKALFLCDRLNIRILPSIVLVTDAEIDQVLVGLDQISTTGKFTTAGIEK
RLHSFGMLACTDIADDEEMGSVRTLSKVLLVQTFGMPLPN*
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spliced messenger RNA

>Ggra4567.t1 ID=Ggra4567.t1|Name=Ggra4567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000898_pilon:1046220..1047617- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAGTCTCGCGCCAGAGGAGCCTGCTCGTTCTTTGACGTCGCCTTT
GCCCAAGCTCTTTAGACCAGAAGATGATCCTCTTGCTGACAGTACCAATT
CCCCGCTGCTTCCACCTCCGCCGCTACCACAAAAGCATCCGTTCAACGAT
AGCATCGTGCTGGCAAACAATGAGAAGTCTACCTGGCTTCAAGACGTCCA
AACCACCTGGGAAGTCGACACCGTACGGCAGAGTGGCATACTCTCCACGT
CTAAATTAGGCCTAGAGCTGGGCGATTACTTCAAAACCCTCAAGCGCTTC
GTACTCGAAGAGGAGCAACAGCAACCCCAAGACGATGACGCGCCTGATAC
GGTGCCCTACCATGCTCCCCACAATGAGTGCCCCGGCGACTCGTCTGACG
AAGAAGATTCGCACCACGTTCTCCCCAATGGATCTGGTCATATGTCACAG
ATTTCTCCCGAAGCGGCTGCCCCACCAGTTGCCCCTAATATCAATGTGGC
ACCTTCTTTACATTCTCCTGCCCCGGGAAGCACCAATGGTCCGTCGTTAA
TGCCGCAACCATCTGGCCTAATGCCTTTAATCCCTCCGACAATGTCAGCA
AACCTAGACCTCTCCACTGCGTACGTTCCGACGCTTTCATCTCCGTTTGT
TCCGCAACTACTGCCTATGTCAATTATAACGATGAAGAAAGATGCTGAAG
AGAAAGCCGTATGGCGAAGAAACGGTCATGGTACGGTCCATCGTATCACA
GAAAAGGAGTTCTTTCCGCGAGCAAAAGCTTCAAAGCGCATGGTGTCCAT
AATGTTTAGACCCGGCTCAAACAGGTGTGCGGAAGAGTTATTTGAGCACA
TCGGCAGGATAGCTCAACGTCATCTTGAAACCCTATTCACGTCGATGGAC
GTTGAAAAAGCTCTTTTCTTGTGTGACAGGTTGAATATTCGTATTCTACC
GTCAATAGTACTGGTTACAGATGCTGAGATTGACCAGGTCCTTGTGGGCC
TCGATCAAATAAGCACCACTGGCAAGTTTACCACTGCTGGCATTGAGAAG
CGGTTGCATTCATTCGGTATGCTAGCCTGCACGGACATCGCTGATGATGA
GGAGATGGGATCTGTCAGAACGCTCTCGAAGGTGTTGCTAGTTCAGACCT
TCGGGATGCCATTGCCAAACTAG
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protein sequence of Ggra4567.t1

>Ggra4567.t1 ID=Ggra4567.t1|Name=Ggra4567.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=391bp
MRSLAPEEPARSLTSPLPKLFRPEDDPLADSTNSPLLPPPPLPQKHPFND
SIVLANNEKSTWLQDVQTTWEVDTVRQSGILSTSKLGLELGDYFKTLKRF
VLEEEQQQPQDDDAPDTVPYHAPHNECPGDSSDEEDSHHVLPNGSGHMSQ
ISPEAAAPPVAPNINVAPSLHSPAPGSTNGPSLMPQPSGLMPLIPPTMSA
NLDLSTAYVPTLSSPFVPQLLPMSIITMKKDAEEKAVWRRNGHGTVHRIT
EKEFFPRAKASKRMVSIMFRPGSNRCAEELFEHIGRIAQRHLETLFTSMD
VEKALFLCDRLNIRILPSIVLVTDAEIDQVLVGLDQISTTGKFTTAGIEK
RLHSFGMLACTDIADDEEMGSVRTLSKVLLVQTFGMPLPN*
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mRNA from alignment at tig00000898_pilon:1046220..1047617-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4567.t1 ID=Ggra4567.t1|Name=Ggra4567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000898_pilon:1046220..1047617- (Gracilaria gracilis GNS1m male)
ATGAGGAGTCTCGCGCCAGAGGAGCCTGCTCGTTCTTTGACGTCGCCTTT
GCCCAAGCTCTTTAGACCAGAAGATGATCCTCTTGCTGACGTACCTCCAC
CGCAGAAGCCGTCCATTTCGAGCATTCGCAACGCCTGACGCGTCATACGC
GATATCACCGTACCCAAGGACGAGCGCGCCATTCCCATAAGCGACGATCA
CACATTGGCCAGAGTACCAATTCCCCGCTGCTTCCACCTCCGCCGCTACC
ACAAAAGCATCCGTTCAACGATAGCATCGTGCTGGCAAACAATGAGAAGT
CTACCTGGCTTCAAGACGTCCAAACCACCTGGGAAGTCGACACCGTACGG
CAGAGTGGCATACTCTCCACGTCTAAATTAGGCCTAGAGCTGGGCGATTA
CTTCAAAACCCTCAAGCGCTTCGTACTCGAAGAGGAGCAACAGCAACCCC
AAGACGATGACGCGCCTGATACGGTGCCCTACCATGCTCCCCACAATGAG
TGCCCCGGCGACTCGTCTGACGAAGAAGATTCGCACCACGTTCTCCCCAA
TGGATCTGGTCATATGTCACAGATTTCTCCCGAAGCGGCTGCCCCACCAG
TTGCCCCTAATATCAATGTGGCACCTTCTTTACATTCTCCTGCCCCGGGA
AGCACCAATGGTCCGTCGTTAATGCCGCAACCATCTGGCCTAATGCCTTT
AATCCCTCCGACAATGTCAGCAAACCTAGACCTCTCCACTGCGTACGTTC
CGACGCTTTCATCTCCGTTTGTTCCGCAACTACTGCCTATGTCAATTATA
ACGGTACCTTGAAAGCCTGTAAGAACGGCTGGACTCGGAGATAGATCGGT
TGAACAACATCGACGATGATGACTTGGAAGCCATTCGCCGCAAACGCTTG
GCGGAGATGAAGAAAGATGCTGAAGAGAAAGCCGTATGGCGAAGAAACGG
TCATGGTACGGTCCATCGTATCACAGAAAAGGAGTTCTTTCCGCGAGCAA
AAGCTTCAAAGCGCATGGTGTCCATAATGTTTAGACCCGGCTCAAACAGG
TGTGCGGAAGAGTTATTTGAGCACATCGGCAGGATAGCTCAACGTCATCT
TGAAACCCTATTCACGTCGATGGACGTTGAAAAAGCTCTTTTCTTGTGTG
ACAGGTTGAATATTCGTATTCTACCGTCAATAGTACTGGTTACAGATGCT
GAGATTGACCAGGTCCTTGTGGGCCTCGATCAAATAAGCACCACTGGCAA
GTTTACCACTGCTGGCATTGAGAAGCGGTTGCATTCATTCGGTATGCTAG
CCTGCACGGACATCGCTGATGATGAGGAGATGGGATCTGTCAGAACGCTC
TCGAAGGTGTTGCTAGTTCAGACCTTCGGGATGCCATTGCCAAACTAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:1046220..1047617-

>Ggra4567.t1 ID=Ggra4567.t1|Name=Ggra4567.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00000898_pilon:1046220..1047617- (Gracilaria gracilis GNS1m male)
ATGAGGAGTCTCGCGCCAGAGGAGCCTGCTCGTTCTTTGACGTCGCCTTT
GCCCAAGCTCTTTAGACCAGAAGATGATCCTCTTGCTGACAGTACCAATT
CCCCGCTGCTTCCACCTCCGCCGCTACCACAAAAGCATCCGTTCAACGAT
AGCATCGTGCTGGCAAACAATGAGAAGTCTACCTGGCTTCAAGACGTCCA
AACCACCTGGGAAGTCGACACCGTACGGCAGAGTGGCATACTCTCCACGT
CTAAATTAGGCCTAGAGCTGGGCGATTACTTCAAAACCCTCAAGCGCTTC
GTACTCGAAGAGGAGCAACAGCAACCCCAAGACGATGACGCGCCTGATAC
GGTGCCCTACCATGCTCCCCACAATGAGTGCCCCGGCGACTCGTCTGACG
AAGAAGATTCGCACCACGTTCTCCCCAATGGATCTGGTCATATGTCACAG
ATTTCTCCCGAAGCGGCTGCCCCACCAGTTGCCCCTAATATCAATGTGGC
ACCTTCTTTACATTCTCCTGCCCCGGGAAGCACCAATGGTCCGTCGTTAA
TGCCGCAACCATCTGGCCTAATGCCTTTAATCCCTCCGACAATGTCAGCA
AACCTAGACCTCTCCACTGCGTACGTTCCGACGCTTTCATCTCCGTTTGT
TCCGCAACTACTGCCTATGTCAATTATAACGATGAAGAAAGATGCTGAAG
AGAAAGCCGTATGGCGAAGAAACGGTCATGGTACGGTCCATCGTATCACA
GAAAAGGAGTTCTTTCCGCGAGCAAAAGCTTCAAAGCGCATGGTGTCCAT
AATGTTTAGACCCGGCTCAAACAGGTGTGCGGAAGAGTTATTTGAGCACA
TCGGCAGGATAGCTCAACGTCATCTTGAAACCCTATTCACGTCGATGGAC
GTTGAAAAAGCTCTTTTCTTGTGTGACAGGTTGAATATTCGTATTCTACC
GTCAATAGTACTGGTTACAGATGCTGAGATTGACCAGGTCCTTGTGGGCC
TCGATCAAATAAGCACCACTGGCAAGTTTACCACTGCTGGCATTGAGAAG
CGGTTGCATTCATTCGGTATGCTAGCCTGCACGGACATCGCTGATGATGA
GGAGATGGGATCTGTCAGAACGCTCTCGAAGGTGTTGCTAGTTCAGACCT
TCGGGATGCCATTGCCAAACTAG
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