Ggra4566.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4566.t1
Unique NameGgra4566.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:1033236..1034611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010265087.1
PFAMsPMI_typeI
Max annot lvl35493|Streptophyta
KEGG rclassRC00376
KEGG koko:K01809
KEGG ReactionR01819
KEGG Pathwayko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130
KEGG ModuleM00114
GOsGO:0000003,GO:0000032,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004476,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006056,GO:0006057,GO:0006082,GO:0006139,GO:0006464,GO:0006486,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009108,GO:0009110,GO:0009225,GO:0009226,GO:0009298,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009636,GO:0009642,GO:0009646,GO:0009743,GO:0009744,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010154,GO:0014070,GO:0016043,GO:0016051,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017085,GO:0018130,GO:0019438,GO:0019538,GO:0019673,GO:0019752,GO:0019852,GO:0019853,GO:0022414,GO:0031505,GO:0031506,GO:0031667,GO:0032025,GO:0032501,GO:0032502,GO:0033273,GO:0033591,GO:0034284,GO:0034285,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042221,GO:0042364,GO:0042493,GO:0042546,GO:0043170,GO:0043412,GO:0043413,GO:0043436,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045229,GO:0046364,GO:0046394,GO:0046483,GO:0046680,GO:0046686,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0061458,GO:0070085,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700
Evalue0.000146
EggNOG OGsCOG1482@1|root,KOG2757@2759|Eukaryota,37SYP@33090|Viridiplantae,3G97N@35493|Streptophyta
EC5.3.1.8
DescriptionBelongs to the mannose-6-phosphate isomerase type 1 family
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4566Ggra4566Gracilaria gracilis GNS1m malegenetig00000898_pilon 1033236..1034611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4566.t1Ggra4566.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 1033236..1034611 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4566.t1.stop1Ggra4566.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 1033236..1033238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4566.t1.CDS1Ggra4566.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 1033236..1033558 -
Ggra4566.t1.CDS2Ggra4566.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 1034464..1034611 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4566.t1.exon1Ggra4566.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 1033236..1033558 -
Ggra4566.t1.exon2Ggra4566.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 1034464..1034611 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4566.t1.intron1Ggra4566.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 1033559..1034463 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4566.t1.start1Ggra4566.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 1034609..1034611 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4566.t1 ID=Ggra4566.t1|Name=Ggra4566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=157bp
MLTYQDAYPEIMNGTPIDEYSKLYLPLVEEYQLITRVLPSATKYKLPQLL
SNGVKCSVLRYADHQKSGADWHANTDSFRMLALEVLEKFGGYYVPLTTVF
IGDENDPDVVEQVFGTGEGGFHEKGSILGASPKTCASKILNWYNNGSAEP
FKGLST*
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spliced messenger RNA

>Ggra4566.t1 ID=Ggra4566.t1|Name=Ggra4566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00000898_pilon:1033236..1034611- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACCTATCAAGACGCATATCCAGAAATCATGAACGGCACTCCAAT
CGATGAATACTCTAAGCTTTACCTACCGCTTGTGGAAGAGTATCAGCTCA
TCACGCGCGTGTTACCATCTGCTACCAAATACAAGCTTCCTCAACTTCTC
TCGAATGGAGTGAAATGCAGCGTGCTTCGATATGCCGATCACCAAAAGAG
CGGTGCTGATTGGCATGCAAATACCGACTCCTTCAGAATGCTAGCCTTGG
AGGTGCTGGAGAAGTTCGGTGGGTACTACGTTCCATTGACTACGGTCTTC
ATTGGTGATGAAAACGATCCAGATGTCGTAGAACAGGTGTTTGGAACGGG
CGAAGGTGGTTTCCATGAGAAGGGGTCTATTCTTGGAGCTTCGCCAAAGA
CTTGCGCTTCGAAGATTTTGAACTGGTACAACAATGGTTCTGCTGAACCC
TTTAAGGGCCTTTCCACATAA
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protein sequence of Ggra4566.t1

>Ggra4566.t1 ID=Ggra4566.t1|Name=Ggra4566.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=157bp
MLTYQDAYPEIMNGTPIDEYSKLYLPLVEEYQLITRVLPSATKYKLPQLL
SNGVKCSVLRYADHQKSGADWHANTDSFRMLALEVLEKFGGYYVPLTTVF
IGDENDPDVVEQVFGTGEGGFHEKGSILGASPKTCASKILNWYNNGSAEP
FKGLST*
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mRNA from alignment at tig00000898_pilon:1033236..1034611-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4566.t1 ID=Ggra4566.t1|Name=Ggra4566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1376bp|location=Sequence derived from alignment at tig00000898_pilon:1033236..1034611- (Gracilaria gracilis GNS1m male)
ATGCTCACCTATCAAGACGCATATCCAGAAATCATGAACGGCACTCCAAT
CGATGAATACTCTAAGCTTTACCTACCGCTTGTGGAAGAGTATCAGCTCA
TCACGCGCGTGTTACCATCTGCTACCAAATACAAGCTTCCTCAACTTCGT
GGGCCCAGCATCATCATGTGTCTGGACGGTAGTGGATAGGTTTTCCTTTC
AAACGCACTTTCAGAAGCTCGACACGAACTGTATCCGCTTGGACCCGGGC
GTATTTATTACGTAGAAGACTCTGCATCCCTCGTTGTGGAGGCAAAAGGA
TCTGCTGTGGCTGGCCCTCCATCACCGGATCTTGTCTTTTTCCGTGCAAG
TGTCAACCAAAGCAAACTGGGAGTGACGAGCGCAAGCAGTGAACGTTTGA
CCGCAACCGTTTGGTCATTGAATTCGGCGATCACGTGCAGCGATTGCGGC
GTTAACGAAAGACTTTCAAATCGCCTTTCGATCCTTTGTCCTCCTCAATC
AACGGCATTGTTTTGGAATCGATGGCGTTTAAAAACTGTTGTGTCGGACG
GAGCGGTGCGAAGTTGGCAACGGTAGGTTCGAGCCACACGGTGAACTTGT
GGTTCTCTCTGCGAAGCACTTCTGGAGCCTCGAGTGCGCTCGGTTTGGCA
TTCATTGCGTCTATGCGATAGATTCTTTCTATGCGCTCGAATAACCAGTC
TCGTATTAACGCTAGAGCGTCTGACAGTTCAAACGCGGTTTCCGGAAACG
CAAGTGGCACCTTATCGGGCTGTGGTTCGGAGGCAGTGGTTCTGGTAACC
CTTTTTGAACGAAAGATGACGGGCAACACCTCTGTCTCGCTCATTTGGAG
ATTTGAACGTTTCGTTACCCACCTAGAAGTATTCATATGCGATCGTTAAG
CAGCTGCTAATCTTTAAAGTTAGAGAGACACACAAGGACAAAAGTCAGCA
TGTTTGACGCCAGAAACGGTTCGATAAAAACGCATACTGCGGCAACTGTT
GTGTCTCAGCTCTCATAATCATCCCGCATTGAAGCGCTCGTGTTTGCACA
AAGTCTCGAATGGAGTGAAATGCAGCGTGCTTCGATATGCCGATCACCAA
AAGAGCGGTGCTGATTGGCATGCAAATACCGACTCCTTCAGAATGCTAGC
CTTGGAGGTGCTGGAGAAGTTCGGTGGGTACTACGTTCCATTGACTACGG
TCTTCATTGGTGATGAAAACGATCCAGATGTCGTAGAACAGGTGTTTGGA
ACGGGCGAAGGTGGTTTCCATGAGAAGGGGTCTATTCTTGGAGCTTCGCC
AAAGACTTGCGCTTCGAAGATTTTGAACTGGTACAACAATGGTTCTGCTG
AACCCTTTAAGGGCCTTTCCACATAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:1033236..1034611-

>Ggra4566.t1 ID=Ggra4566.t1|Name=Ggra4566.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00000898_pilon:1033236..1034611- (Gracilaria gracilis GNS1m male)
ATGCTCACCTATCAAGACGCATATCCAGAAATCATGAACGGCACTCCAAT
CGATGAATACTCTAAGCTTTACCTACCGCTTGTGGAAGAGTATCAGCTCA
TCACGCGCGTGTTACCATCTGCTACCAAATACAAGCTTCCTCAACTTCTC
TCGAATGGAGTGAAATGCAGCGTGCTTCGATATGCCGATCACCAAAAGAG
CGGTGCTGATTGGCATGCAAATACCGACTCCTTCAGAATGCTAGCCTTGG
AGGTGCTGGAGAAGTTCGGTGGGTACTACGTTCCATTGACTACGGTCTTC
ATTGGTGATGAAAACGATCCAGATGTCGTAGAACAGGTGTTTGGAACGGG
CGAAGGTGGTTTCCATGAGAAGGGGTCTATTCTTGGAGCTTCGCCAAAGA
CTTGCGCTTCGAAGATTTTGAACTGGTACAACAATGGTTCTGCTGAACCC
TTTAAGGGCCTTTCCACATAA
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