Ggra4564.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4564.t1
Unique Name	Ggra4564.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	717

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:1006258..1008494 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4564	Ggra4564	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 1006258..1008494 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4564.t1	Ggra4564.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 1006258..1008494 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4564.t1.CDS1	Ggra4564.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 1006258..1006260 -
Ggra4564.t1.CDS2	Ggra4564.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 1006347..1008494 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4564.t1.exon1	Ggra4564.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 1006258..1006260 -
Ggra4564.t1.exon2	Ggra4564.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 1006347..1008494 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4564.t1.stop1	Ggra4564.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 1006258..1006260 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4564.t1.intron1	Ggra4564.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000898_pilon 1006261..1006346 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4564.t1.start1	Ggra4564.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 1008492..1008494 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:1006258..1008494-
coding sequence from alignment at tig00000898_pilon:1006258..1008494-

mRNA sequence

>Ggra4564.t1 ID=Ggra4564.t1|Name=Ggra4564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp
MYANRVRDAPSERHGFLERLRKSFLRNLSGDSSEIHTVLVPLNVDEEHWD
VLVGKRFIGTKRMRKDHPTVYFGDSLRWKCSRIVLDFFKEAFEVIVLGGN
RSAEVSKRNYMLDIRGYKRQEDAFSCGCYVIAIATEFATDRGFAPRKTFK
SGYNRELSKNYRWMAIRSRVLQILLVSQFFKKEKVTETMVSRYRVHHRED
YSRIRAQGQNRLKTLRHPILKRSDFKLEKEKGIQNALSARDTRAVDVDCG
SKTSVPRSSEETMLMCILDSITAGFDAIEERRSGNCGAVPAPQSSLGNDE
DVLGNNQTTPRLSLSTARRMRVERLNANLSPMPTRSSERKVRFLDSSTAV
KELLDNILADVSQHMESKEKQSGGNLMNMSSFELLQPIPDREGAHLEGEV
FDFMALMASIARAKRFLYGIHHFRYVKLRKKGNGRLINGRFRCQRHSKFA
SSCPSNIMVSLSSMNSNWTVRVNVNHTHAPAQVSDSDIQKRYQSLRRTMQ
SSFRTWEGKEQGKDKSYWNYLYQKCFPDPSASAIYVRKSIGEDMFLFPGG
VSVQENVLHPSSRSIHDTHPVSILPVPTKSNMVQPWEHSVGILRSPPTQV
VHQLESQVVPTVGSTNWKSDGEKDMKEKYMKAEVGVGSRRIDDMTHFSVV
NVSDVRLKSSDDVTYVDPEIGDNSLITQPESQEGKENVERAEGRSLQFSS
AELQHVDCALSEGEAE*

spliced messenger RNA

>Ggra4564.t1 ID=Ggra4564.t1|Name=Ggra4564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2151bp|location=Sequence derived from alignment at tig00000898_pilon:1006258..1008494- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGCAAACAGAGTTAGAGATGCCCCTTCCGAGCGCCACGGTTTTCT
TGAGAGACTTCGAAAGTCATTTCTAAGGAATCTTTCTGGTGATAGTAGCG
AGATACATACTGTATTGGTGCCGTTGAATGTGGATGAAGAGCACTGGGAT
GTTCTTGTTGGTAAGCGATTTATTGGTACAAAACGTATGCGAAAAGACCA
CCCCACAGTGTACTTTGGGGATAGTTTAAGGTGGAAATGCTCAAGGATTG
TTTTGGATTTCTTTAAGGAGGCTTTCGAGGTTATTGTCCTCGGTGGAAAT
CGTTCGGCTGAAGTCTCGAAAAGAAACTATATGCTTGATATTCGAGGATA
CAAACGGCAGGAAGATGCATTTAGCTGTGGATGTTACGTTATCGCAATCG
CTACCGAATTCGCGACGGACAGGGGTTTTGCTCCAAGAAAGACTTTTAAG
TCTGGATACAATCGGGAGCTCTCCAAAAACTACCGCTGGATGGCCATTCG
GAGCCGTGTTTTACAGATCCTATTGGTCTCCCAGTTCTTTAAGAAGGAGA
AAGTCACAGAAACTATGGTTTCTAGGTACAGGGTGCATCATCGAGAGGAC
TACTCACGAATTCGTGCACAGGGGCAGAATCGCTTAAAAACTCTCAGACA
TCCCATTCTAAAGCGTTCAGATTTCAAGTTAGAGAAGGAAAAGGGCATCC
AGAACGCTTTATCTGCACGAGATACTAGAGCAGTGGATGTTGATTGTGGG
AGCAAAACATCTGTACCGCGGTCGAGTGAGGAGACGATGCTGATGTGTAT
CCTGGACAGCATTACAGCTGGATTTGACGCTATCGAAGAGAGAAGGTCAG
GCAATTGTGGTGCGGTACCTGCGCCACAGAGCAGTTTGGGCAATGATGAG
GATGTTCTGGGCAATAACCAGACCACTCCGCGGCTATCACTCAGTACAGC
TCGTAGGATGAGGGTAGAAAGATTGAATGCCAATTTGTCACCCATGCCGA
CTCGTAGCTCCGAACGCAAGGTTCGATTCTTAGACAGCTCCACGGCTGTA
AAAGAACTACTGGATAACATCTTAGCGGATGTATCACAACATATGGAATC
CAAGGAAAAACAATCGGGAGGGAATCTCATGAATATGAGTAGTTTTGAGC
TTCTCCAGCCGATTCCCGACCGTGAGGGAGCCCATCTCGAGGGAGAGGTG
TTCGATTTTATGGCTCTCATGGCATCCATTGCCCGCGCAAAGAGATTCCT
GTACGGAATTCATCACTTTAGATATGTGAAACTGAGAAAGAAGGGCAATG
GACGTCTTATTAATGGTCGGTTCAGGTGCCAGAGACACAGCAAGTTCGCC
AGCTCATGCCCATCGAATATTATGGTGTCTTTGTCGAGCATGAACTCCAA
CTGGACGGTCCGTGTTAATGTGAATCACACCCACGCCCCTGCTCAGGTTT
CTGACTCGGACATTCAGAAGCGCTACCAGTCTCTCCGAAGGACAATGCAA
AGTAGTTTTCGGACGTGGGAAGGTAAGGAGCAGGGAAAGGATAAAAGTTA
TTGGAACTACCTGTACCAAAAGTGCTTCCCTGATCCCTCTGCATCGGCGA
TATATGTTAGAAAGAGTATAGGGGAAGATATGTTTCTTTTTCCTGGCGGA
GTATCTGTGCAAGAAAATGTACTACATCCTTCCTCTCGTTCTATACATGA
CACTCACCCCGTGTCTATACTGCCAGTACCTACAAAAAGCAATATGGTAC
AGCCCTGGGAACATTCAGTCGGGATACTACGCTCTCCACCGACACAAGTG
GTTCATCAACTGGAGTCGCAGGTTGTCCCTACTGTGGGCAGTACAAACTG
GAAAAGTGACGGGGAGAAGGACATGAAAGAGAAGTACATGAAGGCGGAAG
TGGGTGTGGGCTCACGTCGCATAGATGATATGACTCATTTCTCAGTGGTC
AACGTCAGCGACGTGAGATTGAAAAGCAGTGACGACGTCACGTACGTCGA
TCCTGAGATCGGTGACAACTCTTTAATTACACAACCAGAGTCCCAGGAGG
GCAAAGAGAATGTGGAGAGAGCTGAGGGACGATCGCTACAGTTCAGTTCT
GCGGAGCTACAACACGTTGACTGTGCCCTATCGGAGGGAGAAGCAGAGTG
A

protein sequence of Ggra4564.t1

>Ggra4564.t1 ID=Ggra4564.t1|Name=Ggra4564.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=717bp
MYANRVRDAPSERHGFLERLRKSFLRNLSGDSSEIHTVLVPLNVDEEHWD
VLVGKRFIGTKRMRKDHPTVYFGDSLRWKCSRIVLDFFKEAFEVIVLGGN
RSAEVSKRNYMLDIRGYKRQEDAFSCGCYVIAIATEFATDRGFAPRKTFK
SGYNRELSKNYRWMAIRSRVLQILLVSQFFKKEKVTETMVSRYRVHHRED
YSRIRAQGQNRLKTLRHPILKRSDFKLEKEKGIQNALSARDTRAVDVDCG
SKTSVPRSSEETMLMCILDSITAGFDAIEERRSGNCGAVPAPQSSLGNDE
DVLGNNQTTPRLSLSTARRMRVERLNANLSPMPTRSSERKVRFLDSSTAV
KELLDNILADVSQHMESKEKQSGGNLMNMSSFELLQPIPDREGAHLEGEV
FDFMALMASIARAKRFLYGIHHFRYVKLRKKGNGRLINGRFRCQRHSKFA
SSCPSNIMVSLSSMNSNWTVRVNVNHTHAPAQVSDSDIQKRYQSLRRTMQ
SSFRTWEGKEQGKDKSYWNYLYQKCFPDPSASAIYVRKSIGEDMFLFPGG
VSVQENVLHPSSRSIHDTHPVSILPVPTKSNMVQPWEHSVGILRSPPTQV
VHQLESQVVPTVGSTNWKSDGEKDMKEKYMKAEVGVGSRRIDDMTHFSVV
NVSDVRLKSSDDVTYVDPEIGDNSLITQPESQEGKENVERAEGRSLQFSS
AELQHVDCALSEGEAE*

mRNA from alignment at tig00000898_pilon:1006258..1008494-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4564.t1 ID=Ggra4564.t1|Name=Ggra4564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2237bp|location=Sequence derived from alignment at tig00000898_pilon:1006258..1008494- (Gracilaria gracilis GNS1m male)
ATGTATGCAAACAGAGTTAGAGATGCCCCTTCCGAGCGCCACGGTTTTCT
TGAGAGACTTCGAAAGTCATTTCTAAGGAATCTTTCTGGTGATAGTAGCG
AGATACATACTGTATTGGTGCCGTTGAATGTGGATGAAGAGCACTGGGAT
GTTCTTGTTGGTAAGCGATTTATTGGTACAAAACGTATGCGAAAAGACCA
CCCCACAGTGTACTTTGGGGATAGTTTAAGGTGGAAATGCTCAAGGATTG
TTTTGGATTTCTTTAAGGAGGCTTTCGAGGTTATTGTCCTCGGTGGAAAT
CGTTCGGCTGAAGTCTCGAAAAGAAACTATATGCTTGATATTCGAGGATA
CAAACGGCAGGAAGATGCATTTAGCTGTGGATGTTACGTTATCGCAATCG
CTACCGAATTCGCGACGGACAGGGGTTTTGCTCCAAGAAAGACTTTTAAG
TCTGGATACAATCGGGAGCTCTCCAAAAACTACCGCTGGATGGCCATTCG
GAGCCGTGTTTTACAGATCCTATTGGTCTCCCAGTTCTTTAAGAAGGAGA
AAGTCACAGAAACTATGGTTTCTAGGTACAGGGTGCATCATCGAGAGGAC
TACTCACGAATTCGTGCACAGGGGCAGAATCGCTTAAAAACTCTCAGACA
TCCCATTCTAAAGCGTTCAGATTTCAAGTTAGAGAAGGAAAAGGGCATCC
AGAACGCTTTATCTGCACGAGATACTAGAGCAGTGGATGTTGATTGTGGG
AGCAAAACATCTGTACCGCGGTCGAGTGAGGAGACGATGCTGATGTGTAT
CCTGGACAGCATTACAGCTGGATTTGACGCTATCGAAGAGAGAAGGTCAG
GCAATTGTGGTGCGGTACCTGCGCCACAGAGCAGTTTGGGCAATGATGAG
GATGTTCTGGGCAATAACCAGACCACTCCGCGGCTATCACTCAGTACAGC
TCGTAGGATGAGGGTAGAAAGATTGAATGCCAATTTGTCACCCATGCCGA
CTCGTAGCTCCGAACGCAAGGTTCGATTCTTAGACAGCTCCACGGCTGTA
AAAGAACTACTGGATAACATCTTAGCGGATGTATCACAACATATGGAATC
CAAGGAAAAACAATCGGGAGGGAATCTCATGAATATGAGTAGTTTTGAGC
TTCTCCAGCCGATTCCCGACCGTGAGGGAGCCCATCTCGAGGGAGAGGTG
TTCGATTTTATGGCTCTCATGGCATCCATTGCCCGCGCAAAGAGATTCCT
GTACGGAATTCATCACTTTAGATATGTGAAACTGAGAAAGAAGGGCAATG
GACGTCTTATTAATGGTCGGTTCAGGTGCCAGAGACACAGCAAGTTCGCC
AGCTCATGCCCATCGAATATTATGGTGTCTTTGTCGAGCATGAACTCCAA
CTGGACGGTCCGTGTTAATGTGAATCACACCCACGCCCCTGCTCAGGTTT
CTGACTCGGACATTCAGAAGCGCTACCAGTCTCTCCGAAGGACAATGCAA
AGTAGTTTTCGGACGTGGGAAGGTAAGGAGCAGGGAAAGGATAAAAGTTA
TTGGAACTACCTGTACCAAAAGTGCTTCCCTGATCCCTCTGCATCGGCGA
TATATGTTAGAAAGAGTATAGGGGAAGATATGTTTCTTTTTCCTGGCGGA
GTATCTGTGCAAGAAAATGTACTACATCCTTCCTCTCGTTCTATACATGA
CACTCACCCCGTGTCTATACTGCCAGTACCTACAAAAAGCAATATGGTAC
AGCCCTGGGAACATTCAGTCGGGATACTACGCTCTCCACCGACACAAGTG
GTTCATCAACTGGAGTCGCAGGTTGTCCCTACTGTGGGCAGTACAAACTG
GAAAAGTGACGGGGAGAAGGACATGAAAGAGAAGTACATGAAGGCGGAAG
TGGGTGTGGGCTCACGTCGCATAGATGATATGACTCATTTCTCAGTGGTC
AACGTCAGCGACGTGAGATTGAAAAGCAGTGACGACGTCACGTACGTCGA
TCCTGAGATCGGTGACAACTCTTTAATTACACAACCAGAGTCCCAGGAGG
GCAAAGAGAATGTGGAGAGAGCTGAGGGACGATCGCTACAGTTCAGTTCT
GCGGAGCTACAACACGTTGACTGTGCCCTATCGGAGGGAGAAGCAGAGGT
CAAAAGCGGGAACGAGAGGGACACAGAGATGGAAGACGTTGGGGCTTCTG
AACTAATCGAACGCTTTTTATTTCTTGACGATAGTGA

Coding sequence (CDS) from alignment at tig00000898_pilon:1006258..1008494-

>Ggra4564.t1 ID=Ggra4564.t1|Name=Ggra4564.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2151bp|location=Sequence derived from alignment at tig00000898_pilon:1006258..1008494- (Gracilaria gracilis GNS1m male)
ATGTATGCAAACAGAGTTAGAGATGCCCCTTCCGAGCGCCACGGTTTTCT
TGAGAGACTTCGAAAGTCATTTCTAAGGAATCTTTCTGGTGATAGTAGCG
AGATACATACTGTATTGGTGCCGTTGAATGTGGATGAAGAGCACTGGGAT
GTTCTTGTTGGTAAGCGATTTATTGGTACAAAACGTATGCGAAAAGACCA
CCCCACAGTGTACTTTGGGGATAGTTTAAGGTGGAAATGCTCAAGGATTG
TTTTGGATTTCTTTAAGGAGGCTTTCGAGGTTATTGTCCTCGGTGGAAAT
CGTTCGGCTGAAGTCTCGAAAAGAAACTATATGCTTGATATTCGAGGATA
CAAACGGCAGGAAGATGCATTTAGCTGTGGATGTTACGTTATCGCAATCG
CTACCGAATTCGCGACGGACAGGGGTTTTGCTCCAAGAAAGACTTTTAAG
TCTGGATACAATCGGGAGCTCTCCAAAAACTACCGCTGGATGGCCATTCG
GAGCCGTGTTTTACAGATCCTATTGGTCTCCCAGTTCTTTAAGAAGGAGA
AAGTCACAGAAACTATGGTTTCTAGGTACAGGGTGCATCATCGAGAGGAC
TACTCACGAATTCGTGCACAGGGGCAGAATCGCTTAAAAACTCTCAGACA
TCCCATTCTAAAGCGTTCAGATTTCAAGTTAGAGAAGGAAAAGGGCATCC
AGAACGCTTTATCTGCACGAGATACTAGAGCAGTGGATGTTGATTGTGGG
AGCAAAACATCTGTACCGCGGTCGAGTGAGGAGACGATGCTGATGTGTAT
CCTGGACAGCATTACAGCTGGATTTGACGCTATCGAAGAGAGAAGGTCAG
GCAATTGTGGTGCGGTACCTGCGCCACAGAGCAGTTTGGGCAATGATGAG
GATGTTCTGGGCAATAACCAGACCACTCCGCGGCTATCACTCAGTACAGC
TCGTAGGATGAGGGTAGAAAGATTGAATGCCAATTTGTCACCCATGCCGA
CTCGTAGCTCCGAACGCAAGGTTCGATTCTTAGACAGCTCCACGGCTGTA
AAAGAACTACTGGATAACATCTTAGCGGATGTATCACAACATATGGAATC
CAAGGAAAAACAATCGGGAGGGAATCTCATGAATATGAGTAGTTTTGAGC
TTCTCCAGCCGATTCCCGACCGTGAGGGAGCCCATCTCGAGGGAGAGGTG
TTCGATTTTATGGCTCTCATGGCATCCATTGCCCGCGCAAAGAGATTCCT
GTACGGAATTCATCACTTTAGATATGTGAAACTGAGAAAGAAGGGCAATG
GACGTCTTATTAATGGTCGGTTCAGGTGCCAGAGACACAGCAAGTTCGCC
AGCTCATGCCCATCGAATATTATGGTGTCTTTGTCGAGCATGAACTCCAA
CTGGACGGTCCGTGTTAATGTGAATCACACCCACGCCCCTGCTCAGGTTT
CTGACTCGGACATTCAGAAGCGCTACCAGTCTCTCCGAAGGACAATGCAA
AGTAGTTTTCGGACGTGGGAAGGTAAGGAGCAGGGAAAGGATAAAAGTTA
TTGGAACTACCTGTACCAAAAGTGCTTCCCTGATCCCTCTGCATCGGCGA
TATATGTTAGAAAGAGTATAGGGGAAGATATGTTTCTTTTTCCTGGCGGA
GTATCTGTGCAAGAAAATGTACTACATCCTTCCTCTCGTTCTATACATGA
CACTCACCCCGTGTCTATACTGCCAGTACCTACAAAAAGCAATATGGTAC
AGCCCTGGGAACATTCAGTCGGGATACTACGCTCTCCACCGACACAAGTG
GTTCATCAACTGGAGTCGCAGGTTGTCCCTACTGTGGGCAGTACAAACTG
GAAAAGTGACGGGGAGAAGGACATGAAAGAGAAGTACATGAAGGCGGAAG
TGGGTGTGGGCTCACGTCGCATAGATGATATGACTCATTTCTCAGTGGTC
AACGTCAGCGACGTGAGATTGAAAAGCAGTGACGACGTCACGTACGTCGA
TCCTGAGATCGGTGACAACTCTTTAATTACACAACCAGAGTCCCAGGAGG
GCAAAGAGAATGTGGAGAGAGCTGAGGGACGATCGCTACAGTTCAGTTCT
GCGGAGCTACAACACGTTGACTGTGCCCTATCGGAGGGAGAAGCAGAGTG
A