Ggra4561.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4561.t1
Unique NameGgra4561.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:994129..994926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004343743.1
Preferred namePEX11B
PFAMsPEX11
Max annot lvl33154|Opisthokonta
KEGG koko:K13352
KEGG TC1.A.101.1,3.A.20.1.1
KEGG Pathwayko04146,map04146
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005779,GO:0006996,GO:0007031,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0016559,GO:0022607,GO:0023052,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032535,GO:0032991,GO:0042579,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044375,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048285,GO:0050789,GO:0050794,GO:0050896,GO:0051259,GO:0051260,GO:0051716,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0098588,GO:0098805
Evalue5.24e-11
EggNOG OGsKOG4186@1|root,KOG4186@2759|Eukaryota,39RIQ@33154|Opisthokonta
Descriptionperoxisomal biogenesis factor 11 beta
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4561Ggra4561Gracilaria gracilis GNS1m malegenetig00000898_pilon 994129..994926 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4561.t1.stop1Ggra4561.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 994129..994131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4561.t1.CDS1Ggra4561.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 994129..994926 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4561.t1.exon1Ggra4561.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 994129..994926 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4561.t1.start1Ggra4561.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 994924..994926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4561.t1Ggra4561.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 994129..994926 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4561.t1 ID=Ggra4561.t1|Name=Ggra4561.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=266bp
MSLERVPCSPLVIDTWHRALSNSEGRDKLFRLVQYVCKLLRGVKQAGGNT
ATTSGSGSALMAVESAMATSRQISRLLKWTSVYVKRRHDLMRIPNSSVEI
SNLISDLALFAYYLCDNVTFLCKTGVIKRDASKASRRAARFWMLSVMSGL
FSTVVTLMEIRRRHRITRELLLKTENQQQDGEGIDEALEDSTRHAAGKEM
GALMRLQRCAMVACTKQLSDLVVSCSLSTQGGLHTALVGGCGVVSSAVGC
WQTWPVDEVIEPNSE*
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spliced messenger RNA

>Ggra4561.t1 ID=Ggra4561.t1|Name=Ggra4561.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000898_pilon:994129..994926- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTTGAGCGAGTTCCATGCTCCCCACTCGTCATTGACACTTGGCA
CCGCGCGCTGTCCAATTCCGAAGGACGAGATAAGCTTTTCAGGTTGGTAC
AATATGTGTGCAAACTGCTTCGCGGTGTGAAACAAGCGGGCGGCAATACG
GCCACAACTTCAGGGTCAGGGTCCGCGCTGATGGCTGTAGAATCAGCCAT
GGCAACGTCAAGGCAGATCAGTCGTTTGCTCAAATGGACGTCGGTTTACG
TGAAGCGTCGTCATGACCTGATGAGAATTCCGAACTCAAGCGTCGAAATA
AGTAACTTGATATCAGATTTGGCTCTGTTTGCATACTATTTATGTGACAA
CGTTACGTTTTTGTGCAAAACGGGGGTGATAAAACGCGATGCCTCGAAGG
CTTCAAGAAGGGCCGCTCGTTTTTGGATGCTTTCTGTGATGAGCGGATTG
TTCAGCACGGTAGTAACGCTGATGGAGATTCGACGTCGTCACCGAATCAC
ACGCGAACTTCTCTTGAAAACAGAGAACCAGCAACAGGATGGCGAGGGAA
TAGATGAGGCTCTTGAAGATAGTACGCGACATGCGGCTGGCAAGGAGATG
GGGGCGTTGATGAGATTGCAGCGCTGTGCCATGGTGGCTTGTACCAAACA
ACTTTCGGACTTAGTGGTTTCGTGTAGTCTTAGCACACAAGGAGGACTGC
ACACGGCGCTGGTTGGGGGATGTGGCGTTGTGAGTAGTGCTGTTGGATGT
TGGCAGACTTGGCCGGTTGACGAAGTGATAGAACCGAACAGTGAGTGA
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protein sequence of Ggra4561.t1

>Ggra4561.t1 ID=Ggra4561.t1|Name=Ggra4561.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MSLERVPCSPLVIDTWHRALSNSEGRDKLFRLVQYVCKLLRGVKQAGGNT
ATTSGSGSALMAVESAMATSRQISRLLKWTSVYVKRRHDLMRIPNSSVEI
SNLISDLALFAYYLCDNVTFLCKTGVIKRDASKASRRAARFWMLSVMSGL
FSTVVTLMEIRRRHRITRELLLKTENQQQDGEGIDEALEDSTRHAAGKEM
GALMRLQRCAMVACTKQLSDLVVSCSLSTQGGLHTALVGGCGVVSSAVGC
WQTWPVDEVIEPNSE*
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mRNA from alignment at tig00000898_pilon:994129..994926-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4561.t1 ID=Ggra4561.t1|Name=Ggra4561.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000898_pilon:994129..994926- (Gracilaria gracilis GNS1m male)
ATGTCGCTTGAGCGAGTTCCATGCTCCCCACTCGTCATTGACACTTGGCA
CCGCGCGCTGTCCAATTCCGAAGGACGAGATAAGCTTTTCAGGTTGGTAC
AATATGTGTGCAAACTGCTTCGCGGTGTGAAACAAGCGGGCGGCAATACG
GCCACAACTTCAGGGTCAGGGTCCGCGCTGATGGCTGTAGAATCAGCCAT
GGCAACGTCAAGGCAGATCAGTCGTTTGCTCAAATGGACGTCGGTTTACG
TGAAGCGTCGTCATGACCTGATGAGAATTCCGAACTCAAGCGTCGAAATA
AGTAACTTGATATCAGATTTGGCTCTGTTTGCATACTATTTATGTGACAA
CGTTACGTTTTTGTGCAAAACGGGGGTGATAAAACGCGATGCCTCGAAGG
CTTCAAGAAGGGCCGCTCGTTTTTGGATGCTTTCTGTGATGAGCGGATTG
TTCAGCACGGTAGTAACGCTGATGGAGATTCGACGTCGTCACCGAATCAC
ACGCGAACTTCTCTTGAAAACAGAGAACCAGCAACAGGATGGCGAGGGAA
TAGATGAGGCTCTTGAAGATAGTACGCGACATGCGGCTGGCAAGGAGATG
GGGGCGTTGATGAGATTGCAGCGCTGTGCCATGGTGGCTTGTACCAAACA
ACTTTCGGACTTAGTGGTTTCGTGTAGTCTTAGCACACAAGGAGGACTGC
ACACGGCGCTGGTTGGGGGATGTGGCGTTGTGAGTAGTGCTGTTGGATGT
TGGCAGACTTGGCCGGTTGACGAAGTGATAGAACCGAACAGTGAGTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:994129..994926-

>Ggra4561.t1 ID=Ggra4561.t1|Name=Ggra4561.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000898_pilon:994129..994926- (Gracilaria gracilis GNS1m male)
ATGTCGCTTGAGCGAGTTCCATGCTCCCCACTCGTCATTGACACTTGGCA
CCGCGCGCTGTCCAATTCCGAAGGACGAGATAAGCTTTTCAGGTTGGTAC
AATATGTGTGCAAACTGCTTCGCGGTGTGAAACAAGCGGGCGGCAATACG
GCCACAACTTCAGGGTCAGGGTCCGCGCTGATGGCTGTAGAATCAGCCAT
GGCAACGTCAAGGCAGATCAGTCGTTTGCTCAAATGGACGTCGGTTTACG
TGAAGCGTCGTCATGACCTGATGAGAATTCCGAACTCAAGCGTCGAAATA
AGTAACTTGATATCAGATTTGGCTCTGTTTGCATACTATTTATGTGACAA
CGTTACGTTTTTGTGCAAAACGGGGGTGATAAAACGCGATGCCTCGAAGG
CTTCAAGAAGGGCCGCTCGTTTTTGGATGCTTTCTGTGATGAGCGGATTG
TTCAGCACGGTAGTAACGCTGATGGAGATTCGACGTCGTCACCGAATCAC
ACGCGAACTTCTCTTGAAAACAGAGAACCAGCAACAGGATGGCGAGGGAA
TAGATGAGGCTCTTGAAGATAGTACGCGACATGCGGCTGGCAAGGAGATG
GGGGCGTTGATGAGATTGCAGCGCTGTGCCATGGTGGCTTGTACCAAACA
ACTTTCGGACTTAGTGGTTTCGTGTAGTCTTAGCACACAAGGAGGACTGC
ACACGGCGCTGGTTGGGGGATGTGGCGTTGTGAGTAGTGCTGTTGGATGT
TGGCAGACTTGGCCGGTTGACGAAGTGATAGAACCGAACAGTGAGTGA
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