Ggra456.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra456.t1
Unique NameGgra456.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000242_piloncontigtig00000242_pilon:47923..49250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709232.1
Preferred nameNUDT21
PFAMsNUDIX_2
Max annot lvl2759|Eukaryota
KEGG koko:K08736,ko:K14397
KEGG Pathwayko01524,ko03015,ko03430,ko05200,ko05210,map01524,map03015,map03430,map05200,map05210
GOsGO:0000375,GO:0000377,GO:0000398,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005847,GO:0005849,GO:0005856,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010608,GO:0010628,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0017091,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031437,GO:0031439,GO:0031440,GO:0031442,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0042382,GO:0042802,GO:0042803,GO:0042826,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045597,GO:0045935,GO:0046483,GO:0046983,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:0098787,GO:0098789,GO:0110104,GO:1900363,GO:1900365,GO:1901360,GO:1901362,GO:1901363,GO:1901532,GO:1901534,GO:1901576,GO:1903311,GO:1903313,GO:1903706,GO:1903708,GO:1905456,GO:1905458,GO:1990120,GO:2000026,GO:2000736,GO:2000738,GO:2000973,GO:2000975
Evalue6.44e-57
EggNOG OGsKOG1689@1|root,KOG1689@2759|Eukaryota
Descriptionregulation of mRNA cleavage
COG categoryL
BRITEko00000,ko00001,ko03019,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra456Ggra456Gracilaria gracilis GNS1m malegenetig00000242_pilon 47923..49250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra456.t1Ggra456.t1Gracilaria gracilis GNS1m malepolypeptidetig00000242_pilon 47923..49250 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra456.t1.stop1Ggra456.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000242_pilon 47923..47925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra456.t1.CDS1Ggra456.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000242_pilon 47923..48173 -
Ggra456.t1.CDS2Ggra456.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000242_pilon 48386..49250 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra456.t1.exon1Ggra456.t1.exon1Gracilaria gracilis GNS1m maleexontig00000242_pilon 47923..48173 -
Ggra456.t1.exon2Ggra456.t1.exon2Gracilaria gracilis GNS1m maleexontig00000242_pilon 48386..49250 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra456.t1.intron1Ggra456.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000242_pilon 48174..48385 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra456.t1.start1Ggra456.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000242_pilon 49248..49250 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra456.t1 ID=Ggra456.t1|Name=Ggra456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp
MTDVAAEPERAAPPLRRASPAAVPAPDSPPSAPTKPDLAALEPRVPVADA
SPSPSPPADGRAEKAVREEGDDVGDGTQREAELRPEEPCGEHASSQPHSP
SSGDHLENGVTERDEQPTSVEREDADVKRNGAACDSVEPDDKPSSLLDKP
ASDSSFDDPFAELDVVSTMDLFDVSNYTFGIKNEQCRCKLMLSSSKTELY
DHLRTTYNKRGIRRSVGAVILVHNHRFPHILLLQRKDGRGEYVLPGGRLR
PGESNEDGLQRKLVSKLTPSPTAEPDDDDTARPDVGEKLCSWYAIDFDRR
YFPYVPAHVTKPKEELHIYAVSLPSKFTFAVPNNLQLLAVPIFDIFNNSA
TYGDVISSIPSVLSKYHFNYC*
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spliced messenger RNA

>Ggra456.t1 ID=Ggra456.t1|Name=Ggra456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000242_pilon:47923..49250- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGATGTTGCCGCCGAGCCCGAGCGCGCCGCTCCGCCGTTGCGTCG
AGCGTCGCCCGCCGCTGTGCCGGCGCCCGACTCGCCGCCTTCCGCGCCGA
CAAAGCCCGATCTCGCCGCGCTTGAGCCGCGCGTGCCGGTGGCCGATGCG
TCGCCGTCGCCGTCGCCGCCCGCTGACGGGCGCGCGGAGAAGGCTGTGCG
CGAGGAGGGGGACGACGTTGGTGATGGCACGCAGCGTGAGGCTGAGCTGC
GCCCGGAGGAGCCATGTGGTGAGCATGCTTCTTCGCAGCCCCATTCTCCG
AGCAGTGGGGACCATTTGGAGAACGGGGTGACGGAACGAGACGAACAGCC
AACTAGCGTGGAGCGAGAGGACGCTGATGTCAAGCGGAACGGCGCGGCTT
GTGACAGTGTTGAGCCTGATGATAAGCCGTCGTCTTTGCTTGATAAGCCT
GCTTCGGATAGTTCTTTCGACGATCCGTTTGCCGAGTTGGATGTTGTTTC
CACCATGGATCTTTTCGATGTGTCCAATTATACCTTTGGTATAAAGAACG
AGCAATGTCGTTGTAAGCTTATGCTGTCCTCGTCCAAGACCGAGCTGTAC
GACCATTTACGCACAACGTACAACAAGCGTGGTATACGTCGTTCGGTTGG
TGCCGTCATTCTCGTTCACAACCACCGTTTTCCACACATTCTACTGCTGC
AGCGAAAAGATGGACGCGGCGAATATGTGCTACCGGGTGGTCGACTACGG
CCTGGTGAGAGCAATGAAGACGGTCTTCAAAGAAAACTCGTTTCCAAGCT
TACCCCGTCCCCCACGGCTGAGCCAGACGATGATGACACTGCTCGTCCAG
ATGTCGGTGAGAAATTATGTAGCTGGTACGCCATCGATTTTGACCGACGA
TACTTTCCGTACGTCCCAGCTCACGTCACCAAGCCCAAGGAAGAGCTTCA
CATCTACGCCGTATCATTACCGAGCAAGTTCACTTTCGCAGTGCCGAATA
ATTTGCAGCTCTTGGCCGTTCCTATATTCGACATCTTCAACAATTCCGCA
ACATATGGCGATGTCATCAGCTCCATTCCGTCTGTTCTGTCAAAGTATCA
CTTTAACTACTGCTAG
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protein sequence of Ggra456.t1

>Ggra456.t1 ID=Ggra456.t1|Name=Ggra456.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MTDVAAEPERAAPPLRRASPAAVPAPDSPPSAPTKPDLAALEPRVPVADA
SPSPSPPADGRAEKAVREEGDDVGDGTQREAELRPEEPCGEHASSQPHSP
SSGDHLENGVTERDEQPTSVEREDADVKRNGAACDSVEPDDKPSSLLDKP
ASDSSFDDPFAELDVVSTMDLFDVSNYTFGIKNEQCRCKLMLSSSKTELY
DHLRTTYNKRGIRRSVGAVILVHNHRFPHILLLQRKDGRGEYVLPGGRLR
PGESNEDGLQRKLVSKLTPSPTAEPDDDDTARPDVGEKLCSWYAIDFDRR
YFPYVPAHVTKPKEELHIYAVSLPSKFTFAVPNNLQLLAVPIFDIFNNSA
TYGDVISSIPSVLSKYHFNYC*
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mRNA from alignment at tig00000242_pilon:47923..49250-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra456.t1 ID=Ggra456.t1|Name=Ggra456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1328bp|location=Sequence derived from alignment at tig00000242_pilon:47923..49250- (Gracilaria gracilis GNS1m male)
ATGACCGATGTTGCCGCCGAGCCCGAGCGCGCCGCTCCGCCGTTGCGTCG
AGCGTCGCCCGCCGCTGTGCCGGCGCCCGACTCGCCGCCTTCCGCGCCGA
CAAAGCCCGATCTCGCCGCGCTTGAGCCGCGCGTGCCGGTGGCCGATGCG
TCGCCGTCGCCGTCGCCGCCCGCTGACGGGCGCGCGGAGAAGGCTGTGCG
CGAGGAGGGGGACGACGTTGGTGATGGCACGCAGCGTGAGGCTGAGCTGC
GCCCGGAGGAGCCATGTGGTGAGCATGCTTCTTCGCAGCCCCATTCTCCG
AGCAGTGGGGACCATTTGGAGAACGGGGTGACGGAACGAGACGAACAGCC
AACTAGCGTGGAGCGAGAGGACGCTGATGTCAAGCGGAACGGCGCGGCTT
GTGACAGTGTTGAGCCTGATGATAAGCCGTCGTCTTTGCTTGATAAGCCT
GCTTCGGATAGTTCTTTCGACGATCCGTTTGCCGAGTTGGATGTTGTTTC
CACCATGGATCTTTTCGATGTGTCCAATTATACCTTTGGTATAAAGAACG
AGCAATGTCGTTGTAAGCTTATGCTGTCCTCGTCCAAGACCGAGCTGTAC
GACCATTTACGCACAACGTACAACAAGCGTGGTATACGTCGTTCGGTTGG
TGCCGTCATTCTCGTTCACAACCACCGTTTTCCACACATTCTACTGCTGC
AGCGAAAAGATGGACGCGGCGAATATGTGCTACCGGGTGGTCGACTACGG
CCTGGTGAGAGCAATGAAGACGGTCTTCAAAGAAAACTCGTTTCCAAGCT
TACCCCGTCCCCCACGGCTGAGCCAGACGATGATGACACTGCTCGTCCAG
ATGTCGGTGAGAAATGTACGATAACTTTTTGTCGCAGCAGCTTTGTTACT
AAAATGTGTTTCCCAATGCCACCACGCGCAGCCAAAAACACACCACTTCC
TTCAAGCGCCCCCTCGTTCGCTCTCCCTGTTAACAATTGTGCTGACTTGT
TCTTTTTTGTCTTCTTTTTGTCTTCGTCCCGATGCGTTCTTTCCTGCGCC
CGTACTTGCCCGTTGAGCGCCACTCAGTATGTAGCTGGTACGCCATCGAT
TTTGACCGACGATACTTTCCGTACGTCCCAGCTCACGTCACCAAGCCCAA
GGAAGAGCTTCACATCTACGCCGTATCATTACCGAGCAAGTTCACTTTCG
CAGTGCCGAATAATTTGCAGCTCTTGGCCGTTCCTATATTCGACATCTTC
AACAATTCCGCAACATATGGCGATGTCATCAGCTCCATTCCGTCTGTTCT
GTCAAAGTATCACTTTAACTACTGCTAG
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Coding sequence (CDS) from alignment at tig00000242_pilon:47923..49250-

>Ggra456.t1 ID=Ggra456.t1|Name=Ggra456.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00000242_pilon:47923..49250- (Gracilaria gracilis GNS1m male)
ATGACCGATGTTGCCGCCGAGCCCGAGCGCGCCGCTCCGCCGTTGCGTCG
AGCGTCGCCCGCCGCTGTGCCGGCGCCCGACTCGCCGCCTTCCGCGCCGA
CAAAGCCCGATCTCGCCGCGCTTGAGCCGCGCGTGCCGGTGGCCGATGCG
TCGCCGTCGCCGTCGCCGCCCGCTGACGGGCGCGCGGAGAAGGCTGTGCG
CGAGGAGGGGGACGACGTTGGTGATGGCACGCAGCGTGAGGCTGAGCTGC
GCCCGGAGGAGCCATGTGGTGAGCATGCTTCTTCGCAGCCCCATTCTCCG
AGCAGTGGGGACCATTTGGAGAACGGGGTGACGGAACGAGACGAACAGCC
AACTAGCGTGGAGCGAGAGGACGCTGATGTCAAGCGGAACGGCGCGGCTT
GTGACAGTGTTGAGCCTGATGATAAGCCGTCGTCTTTGCTTGATAAGCCT
GCTTCGGATAGTTCTTTCGACGATCCGTTTGCCGAGTTGGATGTTGTTTC
CACCATGGATCTTTTCGATGTGTCCAATTATACCTTTGGTATAAAGAACG
AGCAATGTCGTTGTAAGCTTATGCTGTCCTCGTCCAAGACCGAGCTGTAC
GACCATTTACGCACAACGTACAACAAGCGTGGTATACGTCGTTCGGTTGG
TGCCGTCATTCTCGTTCACAACCACCGTTTTCCACACATTCTACTGCTGC
AGCGAAAAGATGGACGCGGCGAATATGTGCTACCGGGTGGTCGACTACGG
CCTGGTGAGAGCAATGAAGACGGTCTTCAAAGAAAACTCGTTTCCAAGCT
TACCCCGTCCCCCACGGCTGAGCCAGACGATGATGACACTGCTCGTCCAG
ATGTCGGTGAGAAATTATGTAGCTGGTACGCCATCGATTTTGACCGACGA
TACTTTCCGTACGTCCCAGCTCACGTCACCAAGCCCAAGGAAGAGCTTCA
CATCTACGCCGTATCATTACCGAGCAAGTTCACTTTCGCAGTGCCGAATA
ATTTGCAGCTCTTGGCCGTTCCTATATTCGACATCTTCAACAATTCCGCA
ACATATGGCGATGTCATCAGCTCCATTCCGTCTGTTCTGTCAAAGTATCA
CTTTAACTACTGCTAG
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