Ggra4558.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4558.t1
Unique NameGgra4558.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:991272..991892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S101_10V6.1
PFAMsRibosomal_L14e
Max annot lvl35493|Streptophyta
KEGG koko:K02875
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0012505,GO:0015934,GO:0016020,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0042273,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071840,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue3.23e-38
EggNOG OGsCOG2163@1|root,KOG3421@2759|Eukaryota,37TPZ@33090|Viridiplantae,3GHYC@35493|Streptophyta
Description60S ribosomal Protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4558Ggra4558Gracilaria gracilis GNS1m malegenetig00000898_pilon 991272..991892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4558.t1Ggra4558.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 991272..991892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4558.t1.CDS1Ggra4558.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 991272..991274 +
Ggra4558.t1.CDS2Ggra4558.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 991482..991892 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4558.t1.exon1Ggra4558.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 991272..991274 +
Ggra4558.t1.exon2Ggra4558.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 991482..991892 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4558.t1.start1Ggra4558.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 991272..991274 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4558.t1.intron1Ggra4558.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 991275..991481 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4558.t1.stop1Ggra4558.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 991890..991892 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4558.t1 ID=Ggra4558.t1|Name=Ggra4558.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=138bp
MTFKRFVEAGRVALVNYGEYLNKLVVIVDILDQRRVLIEGPTTSVRRQII
NVKRLALTSFTLEAVARGASSEDVKKAYEDAQIDAKFAASSWGLKLARKK
KRAALDDFGRFKVMVARMKKSKAVNTELAKLRPATTA*
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spliced messenger RNA

>Ggra4558.t1 ID=Ggra4558.t1|Name=Ggra4558.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp|location=Sequence derived from alignment at tig00000898_pilon:991272..991892+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTCAAACGTTTTGTTGAAGCGGGACGCGTGGCGCTTGTTAACTA
CGGCGAATACCTCAACAAGCTGGTAGTAATCGTCGACATTCTCGATCAGC
GACGCGTTCTCATAGAAGGACCAACTACATCAGTGCGCCGTCAAATAATC
AACGTCAAACGCCTTGCATTAACTTCTTTCACACTTGAGGCTGTTGCCCG
CGGCGCGTCTTCTGAAGATGTGAAGAAAGCTTACGAAGACGCTCAGATCG
ATGCTAAGTTCGCCGCTTCCAGCTGGGGCTTGAAGTTGGCAAGAAAGAAA
AAACGTGCTGCTCTGGATGATTTTGGTAGATTCAAGGTGATGGTTGCGCG
CATGAAGAAGAGCAAGGCCGTCAACACTGAGCTTGCCAAACTCAGGCCAG
CTACTACTGCGTAA
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protein sequence of Ggra4558.t1

>Ggra4558.t1 ID=Ggra4558.t1|Name=Ggra4558.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=138bp
MTFKRFVEAGRVALVNYGEYLNKLVVIVDILDQRRVLIEGPTTSVRRQII
NVKRLALTSFTLEAVARGASSEDVKKAYEDAQIDAKFAASSWGLKLARKK
KRAALDDFGRFKVMVARMKKSKAVNTELAKLRPATTA*
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mRNA from alignment at tig00000898_pilon:991272..991892+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4558.t1 ID=Ggra4558.t1|Name=Ggra4558.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000898_pilon:991272..991892+ (Gracilaria gracilis GNS1m male)
ATGGTACGTGTGTTCCTGCTCAGATTCGTTCTCCCATCTCCGAACCGCAT
TGCGTCGCCATACTGTCGCGCAGCCCGCTGCCTTTGATGAATCACGGAGT
GGGAATATCAGTATATCCTAATCACAATCAACTAACTCTCCCATTTGCAT
GGAAATCACATGGATTACCTTCCGTATCACTTGATCGTTACCTTCTGAAA
AACACAACAGACGTTCAAACGTTTTGTTGAAGCGGGACGCGTGGCGCTTG
TTAACTACGGCGAATACCTCAACAAGCTGGTAGTAATCGTCGACATTCTC
GATCAGCGACGCGTTCTCATAGAAGGACCAACTACATCAGTGCGCCGTCA
AATAATCAACGTCAAACGCCTTGCATTAACTTCTTTCACACTTGAGGCTG
TTGCCCGCGGCGCGTCTTCTGAAGATGTGAAGAAAGCTTACGAAGACGCT
CAGATCGATGCTAAGTTCGCCGCTTCCAGCTGGGGCTTGAAGTTGGCAAG
AAAGAAAAAACGTGCTGCTCTGGATGATTTTGGTAGATTCAAGGTGATGG
TTGCGCGCATGAAGAAGAGCAAGGCCGTCAACACTGAGCTTGCCAAACTC
AGGCCAGCTACTACTGCGTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:991272..991892+

>Ggra4558.t1 ID=Ggra4558.t1|Name=Ggra4558.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=414bp|location=Sequence derived from alignment at tig00000898_pilon:991272..991892+ (Gracilaria gracilis GNS1m male)
ATGACGTTCAAACGTTTTGTTGAAGCGGGACGCGTGGCGCTTGTTAACTA
CGGCGAATACCTCAACAAGCTGGTAGTAATCGTCGACATTCTCGATCAGC
GACGCGTTCTCATAGAAGGACCAACTACATCAGTGCGCCGTCAAATAATC
AACGTCAAACGCCTTGCATTAACTTCTTTCACACTTGAGGCTGTTGCCCG
CGGCGCGTCTTCTGAAGATGTGAAGAAAGCTTACGAAGACGCTCAGATCG
ATGCTAAGTTCGCCGCTTCCAGCTGGGGCTTGAAGTTGGCAAGAAAGAAA
AAACGTGCTGCTCTGGATGATTTTGGTAGATTCAAGGTGATGGTTGCGCG
CATGAAGAAGAGCAAGGCCGTCAACACTGAGCTTGCCAAACTCAGGCCAG
CTACTACTGCGTAA
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