Ggra4556.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4556.t1
Unique NameGgra4556.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:989128..990034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4556Ggra4556Gracilaria gracilis GNS1m malegenetig00000898_pilon 989128..990034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4556.t1Ggra4556.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 989128..990034 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4556.t1.stop1Ggra4556.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 989128..989130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4556.t1.CDS1Ggra4556.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 989128..989504 -
Ggra4556.t1.CDS2Ggra4556.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 989593..989757 -
Ggra4556.t1.CDS3Ggra4556.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 989848..990034 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4556.t1.exon1Ggra4556.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 989128..989504 -
Ggra4556.t1.exon2Ggra4556.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 989593..989757 -
Ggra4556.t1.exon3Ggra4556.t1.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 989848..990034 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4556.t1.intron1Ggra4556.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 989505..989592 -
Ggra4556.t1.intron2Ggra4556.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 989758..989847 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4556.t1.start1Ggra4556.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 990032..990034 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4556.t1 ID=Ggra4556.t1|Name=Ggra4556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=243bp
MTTRTSAHVPALGLPPKGSTAKSASMRRDSAPSTAGSPRTQHAQTSSQRQ
AVVNRIQFRLAVGHACALVAVAVLIHGALIHSSNLAPNAVALLMCAIPLR
TILSLTDHSITQPTKQSGLNLALKAAVLFSSNALHILATRVSPLRFTRLI
GYSAMDVSATWLEMTVNAKMPSIHPFAIPLSFVYSAADIYLAAIIAGTQP
IVDIFYPFLTLRFVINLRLMLVCSYKIVRQEEMNRSAPHSTR*
back to top

spliced messenger RNA

>Ggra4556.t1 ID=Ggra4556.t1|Name=Ggra4556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000898_pilon:989128..990034- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACCCGCACGTCAGCACACGTCCCAGCGCTCGGTCTCCCGCCGAA
GGGGAGCACTGCCAAATCAGCTTCGATGCGTCGCGATTCCGCTCCGTCCA
CCGCCGGTTCGCCGCGCACGCAGCACGCACAAACTTCCTCGCAGAGGCAA
GCCGTCGTCAACAGAATTCAGTTTCGTTTGGCAGTTGGCCATGCTTGTGC
TCTGGTTGCCGTTGCCGTGCTCATTCATGGCGCACTCATTCATTCCTCCA
ACTTGGCTCCCAATGCTGTCGCCTTGCTAATGTGTGCCATTCCGTTACGC
ACCATTCTATCGCTCACAGACCACAGCATTACCCAACCTACCAAACAATC
TGGTCTCAACCTAGCGCTCAAGGCAGCCGTGCTATTTTCGTCGAATGCAC
TTCACATACTTGCAACCCGCGTATCTCCCCTTCGTTTTACTCGATTAATA
GGCTATTCAGCCATGGATGTCAGCGCTACTTGGTTGGAAATGACGGTCAA
CGCCAAGATGCCCTCAATCCACCCTTTTGCCATTCCACTCTCGTTCGTGT
ATAGCGCCGCTGATATCTATCTGGCGGCTATCATTGCCGGGACACAGCCG
ATTGTGGACATTTTCTATCCCTTTCTAACTCTAAGATTTGTAATCAATCT
CAGACTAATGCTCGTATGCTCCTACAAGATTGTTCGACAAGAGGAGATGA
ATAGGAGTGCACCCCACTCCACTCGGTGA
back to top

protein sequence of Ggra4556.t1

>Ggra4556.t1 ID=Ggra4556.t1|Name=Ggra4556.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=243bp
MTTRTSAHVPALGLPPKGSTAKSASMRRDSAPSTAGSPRTQHAQTSSQRQ
AVVNRIQFRLAVGHACALVAVAVLIHGALIHSSNLAPNAVALLMCAIPLR
TILSLTDHSITQPTKQSGLNLALKAAVLFSSNALHILATRVSPLRFTRLI
GYSAMDVSATWLEMTVNAKMPSIHPFAIPLSFVYSAADIYLAAIIAGTQP
IVDIFYPFLTLRFVINLRLMLVCSYKIVRQEEMNRSAPHSTR*
back to top

mRNA from alignment at tig00000898_pilon:989128..990034-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4556.t1 ID=Ggra4556.t1|Name=Ggra4556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=907bp|location=Sequence derived from alignment at tig00000898_pilon:989128..990034- (Gracilaria gracilis GNS1m male)
ATGACCACCCGCACGTCAGCACACGTCCCAGCGCTCGGTCTCCCGCCGAA
GGGGAGCACTGCCAAATCAGCTTCGATGCGTCGCGATTCCGCTCCGTCCA
CCGCCGGTTCGCCGCGCACGCAGCACGCACAAACTTCCTCGCAGAGGCAA
GCCGTCGTCAACAGAATTCAGTTTCGTTTGGCAGTTGGTAAGCCTCTCAT
CCTTCCACGCCGGCTTCCCCCTCTTCATCCTCAAACCTATATCTAACCAT
CGCTTTGTTTCCTTACTTCGAACAAAGGCCATGCTTGTGCTCTGGTTGCC
GTTGCCGTGCTCATTCATGGCGCACTCATTCATTCCTCCAACTTGGCTCC
CAATGCTGTCGCCTTGCTAATGTGTGCCATTCCGTTACGCACCATTCTAT
CGCTCACAGACCACAGCATTACCCAACCTACCAAACAATCTGGTAAGTTC
ACTCTTTCGCTAAAGTGCTTTTCCCGTTCTTGTCGCCACTGTCTGCCGCC
CATCTAACTAACCCGAACTTTCGAATACAGGTCTCAACCTAGCGCTCAAG
GCAGCCGTGCTATTTTCGTCGAATGCACTTCACATACTTGCAACCCGCGT
ATCTCCCCTTCGTTTTACTCGATTAATAGGCTATTCAGCCATGGATGTCA
GCGCTACTTGGTTGGAAATGACGGTCAACGCCAAGATGCCCTCAATCCAC
CCTTTTGCCATTCCACTCTCGTTCGTGTATAGCGCCGCTGATATCTATCT
GGCGGCTATCATTGCCGGGACACAGCCGATTGTGGACATTTTCTATCCCT
TTCTAACTCTAAGATTTGTAATCAATCTCAGACTAATGCTCGTATGCTCC
TACAAGATTGTTCGACAAGAGGAGATGAATAGGAGTGCACCCCACTCCAC
TCGGTGA
back to top

Coding sequence (CDS) from alignment at tig00000898_pilon:989128..990034-

>Ggra4556.t1 ID=Ggra4556.t1|Name=Ggra4556.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=729bp|location=Sequence derived from alignment at tig00000898_pilon:989128..990034- (Gracilaria gracilis GNS1m male)
ATGACCACCCGCACGTCAGCACACGTCCCAGCGCTCGGTCTCCCGCCGAA
GGGGAGCACTGCCAAATCAGCTTCGATGCGTCGCGATTCCGCTCCGTCCA
CCGCCGGTTCGCCGCGCACGCAGCACGCACAAACTTCCTCGCAGAGGCAA
GCCGTCGTCAACAGAATTCAGTTTCGTTTGGCAGTTGGCCATGCTTGTGC
TCTGGTTGCCGTTGCCGTGCTCATTCATGGCGCACTCATTCATTCCTCCA
ACTTGGCTCCCAATGCTGTCGCCTTGCTAATGTGTGCCATTCCGTTACGC
ACCATTCTATCGCTCACAGACCACAGCATTACCCAACCTACCAAACAATC
TGGTCTCAACCTAGCGCTCAAGGCAGCCGTGCTATTTTCGTCGAATGCAC
TTCACATACTTGCAACCCGCGTATCTCCCCTTCGTTTTACTCGATTAATA
GGCTATTCAGCCATGGATGTCAGCGCTACTTGGTTGGAAATGACGGTCAA
CGCCAAGATGCCCTCAATCCACCCTTTTGCCATTCCACTCTCGTTCGTGT
ATAGCGCCGCTGATATCTATCTGGCGGCTATCATTGCCGGGACACAGCCG
ATTGTGGACATTTTCTATCCCTTTCTAACTCTAAGATTTGTAATCAATCT
CAGACTAATGCTCGTATGCTCCTACAAGATTGTTCGACAAGAGGAGATGA
ATAGGAGTGCACCCCACTCCACTCGGTGA
back to top