Ggra4549.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4549.t1
Unique NameGgra4549.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:974384..975067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog215803.DB30_1320
Preferred namegph
PFAMsHAD_2
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00017
KEGG koko:K01091
KEGG ReactionR01334
KEGG Pathwayko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130
Evalue3.11e-45
EggNOG OGsCOG0546@1|root,COG0546@2|Bacteria,1RDDY@1224|Proteobacteria,42T69@68525|delta/epsilon subdivisions,2WNN3@28221|Deltaproteobacteria,2YZCU@29|Myxococcales
EC3.1.3.18
DescriptionHAD-hyrolase-like
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4549Ggra4549Gracilaria gracilis GNS1m malegenetig00000898_pilon 974384..975067 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4549.t1.start1Ggra4549.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 974384..974386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4549.t1.CDS1Ggra4549.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 974384..975067 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4549.t1.exon1Ggra4549.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 974384..975067 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4549.t1.stop1Ggra4549.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 975065..975067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4549.t1Ggra4549.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 974384..975067 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4549.t1 ID=Ggra4549.t1|Name=Ggra4549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp
MAFRGVLFDLDGTLVDSLHDIAAACNHALRELGHAPQPLRRYAQIAGGGT
QRLMSALLAERLGAAPDAATLGAAVDLKLRFEEHSEHSGSVPFDGVHQML
RQLAASNVPMAVLSNKLQRTVRRVVDGVFPDVPFVYVAGATEHAPLKPHP
HMALHIVHNYFDGVAPQQCLFVGDTEVDMGTAASAGMTGVGVPWGFRSAE
QLRQSGASRVIGAAADICAMVREQPRQ*
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spliced messenger RNA

>Ggra4549.t1 ID=Ggra4549.t1|Name=Ggra4549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000898_pilon:974384..975067+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCCGCGGGGTGCTGTTCGACCTGGACGGCACGTTGGTGGACTC
GCTGCACGACATTGCGGCCGCGTGCAACCACGCGCTACGCGAGCTGGGCC
ATGCGCCGCAGCCGCTGCGCCGCTACGCGCAGATTGCGGGCGGCGGCACG
CAGCGGCTGATGAGCGCGCTGCTGGCCGAGCGGCTTGGcgccgcgcccga
cgccgccacgctcggcgccgccgtcgACCTCAAGCTGCGCTTCGAGGAGC
ACAGCGAGCACAGCGGCAGCGTGCCGTTCGACGGCGTGCACCAGATGCTG
CGCCAACTGGCCGCCAGCAACGTGCCCATGGCGGTGCTGTCCAACAAGCT
GCAGCGCACCGTGCGGCGCGTGGTGGACGGCGTGTTCCCCGACGTGCCGT
TTGTGTACGTGGCCGGCGCCACCGAGCACGCGCCGTTGAAGCCGCACCCG
CACATGGCGCTGCACATTGTGCACAACTACTTTGACGGCGTGGCGCCGCA
GCAGTGCCTGTTCGTGGGCGACACCGAGGTGGACATGGGCACTGCGGCGT
CGGCCGGCATGACGGGCGTGGGCGTGCCGTGGGGCTTCCGCAGCGCCGAG
CAGCTGCGCCAGAGCGGCGCCAGCCGCGTCATCGGCGCCGCCGCCGACAT
CTGCGCCATGGTGCGCGAGCAGCCGCGCCAATAA
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protein sequence of Ggra4549.t1

>Ggra4549.t1 ID=Ggra4549.t1|Name=Ggra4549.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MAFRGVLFDLDGTLVDSLHDIAAACNHALRELGHAPQPLRRYAQIAGGGT
QRLMSALLAERLGAAPDAATLGAAVDLKLRFEEHSEHSGSVPFDGVHQML
RQLAASNVPMAVLSNKLQRTVRRVVDGVFPDVPFVYVAGATEHAPLKPHP
HMALHIVHNYFDGVAPQQCLFVGDTEVDMGTAASAGMTGVGVPWGFRSAE
QLRQSGASRVIGAAADICAMVREQPRQ*
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mRNA from alignment at tig00000898_pilon:974384..975067+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4549.t1 ID=Ggra4549.t1|Name=Ggra4549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000898_pilon:974384..975067+ (Gracilaria gracilis GNS1m male)
ATGGCGTTCCGCGGGGTGCTGTTCGACCTGGACGGCACGTTGGTGGACTC
GCTGCACGACATTGCGGCCGCGTGCAACCACGCGCTACGCGAGCTGGGCC
ATGCGCCGCAGCCGCTGCGCCGCTACGCGCAGATTGCGGGCGGCGGCACG
CAGCGGCTGATGAGCGCGCTGCTGGCCGAGCGGCTTGGcgccgcgcccga
cgccgccacgctcggcgccgccgtcgACCTCAAGCTGCGCTTCGAGGAGC
ACAGCGAGCACAGCGGCAGCGTGCCGTTCGACGGCGTGCACCAGATGCTG
CGCCAACTGGCCGCCAGCAACGTGCCCATGGCGGTGCTGTCCAACAAGCT
GCAGCGCACCGTGCGGCGCGTGGTGGACGGCGTGTTCCCCGACGTGCCGT
TTGTGTACGTGGCCGGCGCCACCGAGCACGCGCCGTTGAAGCCGCACCCG
CACATGGCGCTGCACATTGTGCACAACTACTTTGACGGCGTGGCGCCGCA
GCAGTGCCTGTTCGTGGGCGACACCGAGGTGGACATGGGCACTGCGGCGT
CGGCCGGCATGACGGGCGTGGGCGTGCCGTGGGGCTTCCGCAGCGCCGAG
CAGCTGCGCCAGAGCGGCGCCAGCCGCGTCATCGGCGCCGCCGCCGACAT
CTGCGCCATGGTGCGCGAGCAGCCGCGCCAATAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:974384..975067+

>Ggra4549.t1 ID=Ggra4549.t1|Name=Ggra4549.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00000898_pilon:974384..975067+ (Gracilaria gracilis GNS1m male)
ATGGCGTTCCGCGGGGTGCTGTTCGACCTGGACGGCACGTTGGTGGACTC
GCTGCACGACATTGCGGCCGCGTGCAACCACGCGCTACGCGAGCTGGGCC
ATGCGCCGCAGCCGCTGCGCCGCTACGCGCAGATTGCGGGCGGCGGCACG
CAGCGGCTGATGAGCGCGCTGCTGGCCGAGCGGCTTGGcgccgcgcccga
cgccgccacgctcggcgccgccgtcgACCTCAAGCTGCGCTTCGAGGAGC
ACAGCGAGCACAGCGGCAGCGTGCCGTTCGACGGCGTGCACCAGATGCTG
CGCCAACTGGCCGCCAGCAACGTGCCCATGGCGGTGCTGTCCAACAAGCT
GCAGCGCACCGTGCGGCGCGTGGTGGACGGCGTGTTCCCCGACGTGCCGT
TTGTGTACGTGGCCGGCGCCACCGAGCACGCGCCGTTGAAGCCGCACCCG
CACATGGCGCTGCACATTGTGCACAACTACTTTGACGGCGTGGCGCCGCA
GCAGTGCCTGTTCGTGGGCGACACCGAGGTGGACATGGGCACTGCGGCGT
CGGCCGGCATGACGGGCGTGGGCGTGCCGTGGGGCTTCCGCAGCGCCGAG
CAGCTGCGCCAGAGCGGCGCCAGCCGCGTCATCGGCGCCGCCGCCGACAT
CTGCGCCATGGTGCGCGAGCAGCCGCGCCAATAA
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