Ggra4544.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4544.t1
Unique NameGgra4544.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:960648..961859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703528.1
Preferred nameVRG4
PFAMsEamA,TPT,UAA
Max annot lvl2759|Eukaryota
KEGG koko:K14835,ko:K15356
KEGG TC2.A.7.13
GOsGO:0000139,GO:0000271,GO:0003674,GO:0005215,GO:0005338,GO:0005458,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0007163,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009272,GO:0009987,GO:0010383,GO:0012505,GO:0015780,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016051,GO:0019538,GO:0022857,GO:0030447,GO:0030448,GO:0031090,GO:0031224,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0036080,GO:0036211,GO:0040007,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0051278,GO:0055085,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071852,GO:0071966,GO:0090480,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901264,GO:1901505,GO:1901564,GO:1901566,GO:1901576,GO:1990570
Evalue6.25e-23
EggNOG OGsCOG5070@1|root,KOG1444@2759|Eukaryota
EC2.1.1.310
Descriptionnucleotide-sugar transmembrane transporter activity
COG categoryGOU
BRITEko00000,ko01000,ko02000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4544Ggra4544Gracilaria gracilis GNS1m malegenetig00000898_pilon 960648..961859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4544.t1Ggra4544.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 960648..961859 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4544.t1.stop1Ggra4544.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 960648..960650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4544.t1.CDS1Ggra4544.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 960648..961777 -
Ggra4544.t1.CDS2Ggra4544.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 961823..961859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4544.t1.exon1Ggra4544.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 960648..961777 -
Ggra4544.t1.exon2Ggra4544.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 961823..961859 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4544.t1.intron1Ggra4544.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 961778..961822 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4544.t1.start1Ggra4544.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 961857..961859 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4544.t1 ID=Ggra4544.t1|Name=Ggra4544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MRPSLSSSSGTIAPPTTTASRKPLDAGGGAALRAVTASFPVLAHFHRLGW
DAAGILACLWWATQSVALVLANKAVFSQPLFDYPWLIIAVQCLVVVLAFS
VVAVVRNEPPTVSTTHVSSMLLPSALFLLYHYSNARSLRFISLPAFTVVK
SLAPLGVTTVERIAFGHSIPSGVYVAMALSMLANVFTFDSASAISQTSLL
GYVWSCFNVSTHMFYVLSLRYCAGSYRATDKAFVANLLSLPVALLFALFN
QELPTFAHEVALLPITAKIPLVFSFALSAGCLVSVLSAFEAASSDVLRYL
AQTNKIAIVLLGAAIFRTKFTPHAWFGVFLALISGFLFVYAKSHSHNVAL
GIPRPIVSSPTLELLLPTADQVDRQIELAAPGSEDEKT*
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spliced messenger RNA

>Ggra4544.t1 ID=Ggra4544.t1|Name=Ggra4544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000898_pilon:960648..961859- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACCGTCGCTTTCGTCTTCGTCCGGTACCATTGCCCCCCCCACCAC
GACGGCCTCCCGCAAGCCTTTGGACGCCGGCGGCGGTGCCGCGCTGCGCG
CCGTCACCGCCTCCTTCCCAGTGCTCGCGCACTTCCATCGCCTTGGTTGG
GATGCTGCCGGCATTCTCGCATGTCTTTGGTGGGCTACCCAATCCGTCGC
ACTTGTGCTCGCTAACAAGGCCGTATTCTCCCAACCACTCTTTGACTACC
CTTGGCTTATCATAGCCGTGCAATGTCTTGTTGTCGTGCTCGCGTTTTCC
GTCGTCGCAGTTGTTCGTAACGAACCCCCCACCGTGTCCACCACGCACGT
TTCCAGCATGCTCCTTCCGTCCGCGCTGTTCCTACTCTACCACTATTCCA
ACGCTCGTTCTCTACGCTTCATCTCGCTGCCCGCTTTCACAGTCGTCAAG
AGTTTGGCCCCTCTTGGTGTCACAACTGTCGAGAGAATTGCATTTGGTCA
TTCAATTCCCAGCGGCGTTTATGTTGCCATGGCGCTTTCCATGCTAGCCA
ATGTGTTCACATTTGACTCCGCCAGCGCTATCTCTCAAACATCCCTTTTG
GGCTACGTGTGGTCGTGCTTCAATGTTTCTACACACATGTTCTACGTGCT
CAGTCTACGCTATTGCGCTGGAAGCTATCGAGCAACTGACAAAGCGTTCG
TTGCAAATCTCCTTTCGCTTCCCGTTGCGCTCTTGTTTGCCTTGTTCAAC
CAAGAGTTACCCACGTTCGCCCACGAAGTTGCGCTCTTGCCCATCACCGC
CAAGATACCCCTAGTTTTTTCGTTTGCGCTCAGCGCCGGCTGTCTTGTGT
CTGTTTTGTCCGCTTTCGAAGCTGCGTCAAGTGACGTCCTGCGTTACCTT
GCGCAGACTAACAAGATCGCTATCGTGCTGCTCGGAGCTGCCATTTTCCG
CACCAAATTCACCCCTCATGCTTGGTTTGGTGTATTCCTCGCATTGATAT
CGGGCTTCCTATTTGTCTACGCCAAGTCGCACTCACATAATGTGGCGCTG
GGGATTCCCAGACCTATTGTTAGCAGCCCCACGTTAGAACTACTGCTCCC
CACAGCAGATCAGGTGGATCGCCAAATTGAACTAGCGGCACCAGGCAGTG
AAGATGAAAAAACCTGA
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protein sequence of Ggra4544.t1

>Ggra4544.t1 ID=Ggra4544.t1|Name=Ggra4544.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MRPSLSSSSGTIAPPTTTASRKPLDAGGGAALRAVTASFPVLAHFHRLGW
DAAGILACLWWATQSVALVLANKAVFSQPLFDYPWLIIAVQCLVVVLAFS
VVAVVRNEPPTVSTTHVSSMLLPSALFLLYHYSNARSLRFISLPAFTVVK
SLAPLGVTTVERIAFGHSIPSGVYVAMALSMLANVFTFDSASAISQTSLL
GYVWSCFNVSTHMFYVLSLRYCAGSYRATDKAFVANLLSLPVALLFALFN
QELPTFAHEVALLPITAKIPLVFSFALSAGCLVSVLSAFEAASSDVLRYL
AQTNKIAIVLLGAAIFRTKFTPHAWFGVFLALISGFLFVYAKSHSHNVAL
GIPRPIVSSPTLELLLPTADQVDRQIELAAPGSEDEKT*
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mRNA from alignment at tig00000898_pilon:960648..961859-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4544.t1 ID=Ggra4544.t1|Name=Ggra4544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000898_pilon:960648..961859- (Gracilaria gracilis GNS1m male)
ATGCGACCGTCGCTTTCGTCTTCGTCCGGTACCATTGGTATGCAGTCCAT
CGCCGCCCTACGTCTCCTCCGGTAGTGCTCAGCCCCCCCCACCACGACGG
CCTCCCGCAAGCCTTTGGACGCCGGCGGCGGTGCCGCGCTGCGCGCCGTC
ACCGCCTCCTTCCCAGTGCTCGCGCACTTCCATCGCCTTGGTTGGGATGC
TGCCGGCATTCTCGCATGTCTTTGGTGGGCTACCCAATCCGTCGCACTTG
TGCTCGCTAACAAGGCCGTATTCTCCCAACCACTCTTTGACTACCCTTGG
CTTATCATAGCCGTGCAATGTCTTGTTGTCGTGCTCGCGTTTTCCGTCGT
CGCAGTTGTTCGTAACGAACCCCCCACCGTGTCCACCACGCACGTTTCCA
GCATGCTCCTTCCGTCCGCGCTGTTCCTACTCTACCACTATTCCAACGCT
CGTTCTCTACGCTTCATCTCGCTGCCCGCTTTCACAGTCGTCAAGAGTTT
GGCCCCTCTTGGTGTCACAACTGTCGAGAGAATTGCATTTGGTCATTCAA
TTCCCAGCGGCGTTTATGTTGCCATGGCGCTTTCCATGCTAGCCAATGTG
TTCACATTTGACTCCGCCAGCGCTATCTCTCAAACATCCCTTTTGGGCTA
CGTGTGGTCGTGCTTCAATGTTTCTACACACATGTTCTACGTGCTCAGTC
TACGCTATTGCGCTGGAAGCTATCGAGCAACTGACAAAGCGTTCGTTGCA
AATCTCCTTTCGCTTCCCGTTGCGCTCTTGTTTGCCTTGTTCAACCAAGA
GTTACCCACGTTCGCCCACGAAGTTGCGCTCTTGCCCATCACCGCCAAGA
TACCCCTAGTTTTTTCGTTTGCGCTCAGCGCCGGCTGTCTTGTGTCTGTT
TTGTCCGCTTTCGAAGCTGCGTCAAGTGACGTCCTGCGTTACCTTGCGCA
GACTAACAAGATCGCTATCGTGCTGCTCGGAGCTGCCATTTTCCGCACCA
AATTCACCCCTCATGCTTGGTTTGGTGTATTCCTCGCATTGATATCGGGC
TTCCTATTTGTCTACGCCAAGTCGCACTCACATAATGTGGCGCTGGGGAT
TCCCAGACCTATTGTTAGCAGCCCCACGTTAGAACTACTGCTCCCCACAG
CAGATCAGGTGGATCGCCAAATTGAACTAGCGGCACCAGGCAGTGAAGAT
GAAAAAACCTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:960648..961859-

>Ggra4544.t1 ID=Ggra4544.t1|Name=Ggra4544.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000898_pilon:960648..961859- (Gracilaria gracilis GNS1m male)
ATGCGACCGTCGCTTTCGTCTTCGTCCGGTACCATTGCCCCCCCCACCAC
GACGGCCTCCCGCAAGCCTTTGGACGCCGGCGGCGGTGCCGCGCTGCGCG
CCGTCACCGCCTCCTTCCCAGTGCTCGCGCACTTCCATCGCCTTGGTTGG
GATGCTGCCGGCATTCTCGCATGTCTTTGGTGGGCTACCCAATCCGTCGC
ACTTGTGCTCGCTAACAAGGCCGTATTCTCCCAACCACTCTTTGACTACC
CTTGGCTTATCATAGCCGTGCAATGTCTTGTTGTCGTGCTCGCGTTTTCC
GTCGTCGCAGTTGTTCGTAACGAACCCCCCACCGTGTCCACCACGCACGT
TTCCAGCATGCTCCTTCCGTCCGCGCTGTTCCTACTCTACCACTATTCCA
ACGCTCGTTCTCTACGCTTCATCTCGCTGCCCGCTTTCACAGTCGTCAAG
AGTTTGGCCCCTCTTGGTGTCACAACTGTCGAGAGAATTGCATTTGGTCA
TTCAATTCCCAGCGGCGTTTATGTTGCCATGGCGCTTTCCATGCTAGCCA
ATGTGTTCACATTTGACTCCGCCAGCGCTATCTCTCAAACATCCCTTTTG
GGCTACGTGTGGTCGTGCTTCAATGTTTCTACACACATGTTCTACGTGCT
CAGTCTACGCTATTGCGCTGGAAGCTATCGAGCAACTGACAAAGCGTTCG
TTGCAAATCTCCTTTCGCTTCCCGTTGCGCTCTTGTTTGCCTTGTTCAAC
CAAGAGTTACCCACGTTCGCCCACGAAGTTGCGCTCTTGCCCATCACCGC
CAAGATACCCCTAGTTTTTTCGTTTGCGCTCAGCGCCGGCTGTCTTGTGT
CTGTTTTGTCCGCTTTCGAAGCTGCGTCAAGTGACGTCCTGCGTTACCTT
GCGCAGACTAACAAGATCGCTATCGTGCTGCTCGGAGCTGCCATTTTCCG
CACCAAATTCACCCCTCATGCTTGGTTTGGTGTATTCCTCGCATTGATAT
CGGGCTTCCTATTTGTCTACGCCAAGTCGCACTCACATAATGTGGCGCTG
GGGATTCCCAGACCTATTGTTAGCAGCCCCACGTTAGAACTACTGCTCCC
CACAGCAGATCAGGTGGATCGCCAAATTGAACTAGCGGCACCAGGCAGTG
AAGATGAAAAAACCTGA
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