Ggra4539.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4539.t1
Unique NameGgra4539.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length102
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:941193..941498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4539Ggra4539Gracilaria gracilis GNS1m malegenetig00000898_pilon 941193..941498 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4539.t1.start1Ggra4539.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 941193..941195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4539.t1.CDS1Ggra4539.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 941193..941498 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4539.t1.exon1Ggra4539.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 941193..941498 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4539.t1.stop1Ggra4539.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 941496..941498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4539.t1Ggra4539.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 941193..941498 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4539.t1 ID=Ggra4539.t1|Name=Ggra4539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=102bp
MNDLEDREVMTSEWVRGHADRVVARERNGNNMNRSNDPSGPLFPASDFAD
VDVGQRGKHRRAISDGAVLVEDRYQRLDEQEEAVGYAAHVSSDEDDVERG
P*
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spliced messenger RNA

>Ggra4539.t1 ID=Ggra4539.t1|Name=Ggra4539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp|location=Sequence derived from alignment at tig00000898_pilon:941193..941498+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atGAACGATCTCGAGGACCGAGAAGTTATGACAAGTGAATGGGTAAGAGG
GCATGCTGACCGGGTAGTGGCACGCGAACGGAATGGTAATAATATGAACA
GGAGCAACGACCCGAGCGGACCGCTCTTCCCAGCCTCTGATTTTGCTGAT
GTTGATGTTGGACAACGAGGCAAGCATCGTCGCGCTATTAGTGATGGGGC
TGTACTCGTTGAGGATCGCTATCAGCGGCTGGACGAACAGGAGGAAGCGG
TTGGATATGCTGCACATGTTTCTAGCGATGAAGATGATGTTGAGCGGGGT
CCTTGA
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protein sequence of Ggra4539.t1

>Ggra4539.t1 ID=Ggra4539.t1|Name=Ggra4539.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=102bp
MNDLEDREVMTSEWVRGHADRVVARERNGNNMNRSNDPSGPLFPASDFAD
VDVGQRGKHRRAISDGAVLVEDRYQRLDEQEEAVGYAAHVSSDEDDVERG
P*
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mRNA from alignment at tig00000898_pilon:941193..941498+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4539.t1 ID=Ggra4539.t1|Name=Ggra4539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp|location=Sequence derived from alignment at tig00000898_pilon:941193..941498+ (Gracilaria gracilis GNS1m male)
atGAACGATCTCGAGGACCGAGAAGTTATGACAAGTGAATGGGTAAGAGG
GCATGCTGACCGGGTAGTGGCACGCGAACGGAATGGTAATAATATGAACA
GGAGCAACGACCCGAGCGGACCGCTCTTCCCAGCCTCTGATTTTGCTGAT
GTTGATGTTGGACAACGAGGCAAGCATCGTCGCGCTATTAGTGATGGGGC
TGTACTCGTTGAGGATCGCTATCAGCGGCTGGACGAACAGGAGGAAGCGG
TTGGATATGCTGCACATGTTTCTAGCGATGAAGATGATGTTGAGCGGGGT
CCTTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:941193..941498+

>Ggra4539.t1 ID=Ggra4539.t1|Name=Ggra4539.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=306bp|location=Sequence derived from alignment at tig00000898_pilon:941193..941498+ (Gracilaria gracilis GNS1m male)
atGAACGATCTCGAGGACCGAGAAGTTATGACAAGTGAATGGGTAAGAGG
GCATGCTGACCGGGTAGTGGCACGCGAACGGAATGGTAATAATATGAACA
GGAGCAACGACCCGAGCGGACCGCTCTTCCCAGCCTCTGATTTTGCTGAT
GTTGATGTTGGACAACGAGGCAAGCATCGTCGCGCTATTAGTGATGGGGC
TGTACTCGTTGAGGATCGCTATCAGCGGCTGGACGAACAGGAGGAAGCGG
TTGGATATGCTGCACATGTTTCTAGCGATGAAGATGATGTTGAGCGGGGT
CCTTGA
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