Ggra4537.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4537.t1
Unique Name	Ggra4537.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	239

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:931465..932181 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002585922.1
Preferred name	COL6A6
PFAMs	Collagen,Kunitz_BPTI,VWA
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K06236,ko:K06238,ko:K19720
KEGG Pathway	ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
GOs	GO:0005575,GO:0005576,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030198,GO:0031012,GO:0032991,GO:0043062,GO:0043933,GO:0044085,GO:0044421,GO:0051259,GO:0051291,GO:0065003,GO:0070206,GO:0070208,GO:0071840
Evalue	1.89e-05
EggNOG OGs	KOG1217@1\|root,KOG3544@1\|root,KOG4297@1\|root,KOG1217@2759\|Eukaryota,KOG3544@2759\|Eukaryota,KOG4297@2759\|Eukaryota,38DGH@33154\|Opisthokonta,3BA28@33208\|Metazoa,3CSUY@33213\|Bilateria,4858V@7711\|Chordata
Description	biological adhesion
COG category	W
BRITE	ko00000,ko00001,ko00536,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4537	Ggra4537	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 931465..932181 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4537.t1.start1	Ggra4537.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 931465..931467 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4537.t1.CDS1	Ggra4537.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 931465..932181 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4537.t1.exon1	Ggra4537.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 931465..932181 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4537.t1.stop1	Ggra4537.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 932179..932181 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4537.t1	Ggra4537.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 931465..932181 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:931465..932181+
coding sequence from alignment at tig00000898_pilon:931465..932181+

mRNA sequence

>Ggra4537.t1 ID=Ggra4537.t1|Name=Ggra4537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=239bp
MQMFGGTLFASALELCQSQLGGASDPRVVVLLTDGVNADPVPATAAADTI
KADGITLITIGVGGGVATPTLEALATSPDLFIPVTDFGTFQTAIEEIVTS
LCPLPACVNFDCAKCGQVLECYVNSGFDELDAAICETVLDESLFCSSRRG
RGTSCLQQCSGRQGVKCIPGLNFGSCPQMIGASPMCMGGAGGNGERPADL
SNFASYQACFADGGAFEVTCLNAKCEDGSSCPCAEPFQ*

spliced messenger RNA

>Ggra4537.t1 ID=Ggra4537.t1|Name=Ggra4537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000898_pilon:931465..932181+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGATGTTTGGTGGTACTCTGTTTGCTTCTGCTCTTGAGCTCTGTCA
GTCTCAACTAGGTGGCGCATCTGATCCGCGTGTAGTCGTTCTTCTTACCG
ATGGAGTTAACGCCGACCCGGTACCGGCTACCGCAGCGGCTGATACCATT
AAAGCAGATGGAATCACACTCATCACGATTGGAGTCGGTGGTGGGGTCGC
TACACCAACTCTTGAAGCTCTCGCCACTAGTCCGGACTTGTTTATCCCTG
TGACCGATTTTGGCACGTTCCAGACGGCCATAGAAGAAATTGTTACCAGC
CTTTGTCCACTTCCAGCATGCGTGAACTTTGATTGTGCCAAATGTGGACA
AGTCCTTGAATGTTATGTCAATTCAGGATTCGACGAACTGGACGCGGCAA
TATGTGAGACAGTGCTCGATGAATCTCTATTCTGCAGTTCTCGCAGAGGA
CGCGGCACATCGTGCCTGCAGCAGTGCAGTGGTCGTCAGGGCGTCAAATG
TATCCCAGGGTTAAATTTCGGATCTTGTCCGCAGATGATTGGAGCTAGTC
CAATGTGTATGGGAGGAGCAGGAGGGAATGGGGAACGTCCAGCCGATCTT
AGCAACTTTGCCTCGTACCAGGCATGCTTCGCCGATGGCGGGGCATTTGA
AGTGACTTGCCTCAATGCAAAGTGTGAAGATGGCTCTTCCTGTCCCTGTG
CTGAACCGTTTCAGTGA

protein sequence of Ggra4537.t1

>Ggra4537.t1 ID=Ggra4537.t1|Name=Ggra4537.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=239bp
MQMFGGTLFASALELCQSQLGGASDPRVVVLLTDGVNADPVPATAAADTI
KADGITLITIGVGGGVATPTLEALATSPDLFIPVTDFGTFQTAIEEIVTS
LCPLPACVNFDCAKCGQVLECYVNSGFDELDAAICETVLDESLFCSSRRG
RGTSCLQQCSGRQGVKCIPGLNFGSCPQMIGASPMCMGGAGGNGERPADL
SNFASYQACFADGGAFEVTCLNAKCEDGSSCPCAEPFQ*

mRNA from alignment at tig00000898_pilon:931465..932181+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4537.t1 ID=Ggra4537.t1|Name=Ggra4537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000898_pilon:931465..932181+ (Gracilaria gracilis GNS1m male)
ATGCAGATGTTTGGTGGTACTCTGTTTGCTTCTGCTCTTGAGCTCTGTCA
GTCTCAACTAGGTGGCGCATCTGATCCGCGTGTAGTCGTTCTTCTTACCG
ATGGAGTTAACGCCGACCCGGTACCGGCTACCGCAGCGGCTGATACCATT
AAAGCAGATGGAATCACACTCATCACGATTGGAGTCGGTGGTGGGGTCGC
TACACCAACTCTTGAAGCTCTCGCCACTAGTCCGGACTTGTTTATCCCTG
TGACCGATTTTGGCACGTTCCAGACGGCCATAGAAGAAATTGTTACCAGC
CTTTGTCCACTTCCAGCATGCGTGAACTTTGATTGTGCCAAATGTGGACA
AGTCCTTGAATGTTATGTCAATTCAGGATTCGACGAACTGGACGCGGCAA
TATGTGAGACAGTGCTCGATGAATCTCTATTCTGCAGTTCTCGCAGAGGA
CGCGGCACATCGTGCCTGCAGCAGTGCAGTGGTCGTCAGGGCGTCAAATG
TATCCCAGGGTTAAATTTCGGATCTTGTCCGCAGATGATTGGAGCTAGTC
CAATGTGTATGGGAGGAGCAGGAGGGAATGGGGAACGTCCAGCCGATCTT
AGCAACTTTGCCTCGTACCAGGCATGCTTCGCCGATGGCGGGGCATTTGA
AGTGACTTGCCTCAATGCAAAGTGTGAAGATGGCTCTTCCTGTCCCTGTG
CTGAACCGTTTCAGTGA

Coding sequence (CDS) from alignment at tig00000898_pilon:931465..932181+

>Ggra4537.t1 ID=Ggra4537.t1|Name=Ggra4537.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=717bp|location=Sequence derived from alignment at tig00000898_pilon:931465..932181+ (Gracilaria gracilis GNS1m male)
ATGCAGATGTTTGGTGGTACTCTGTTTGCTTCTGCTCTTGAGCTCTGTCA
GTCTCAACTAGGTGGCGCATCTGATCCGCGTGTAGTCGTTCTTCTTACCG
ATGGAGTTAACGCCGACCCGGTACCGGCTACCGCAGCGGCTGATACCATT
AAAGCAGATGGAATCACACTCATCACGATTGGAGTCGGTGGTGGGGTCGC
TACACCAACTCTTGAAGCTCTCGCCACTAGTCCGGACTTGTTTATCCCTG
TGACCGATTTTGGCACGTTCCAGACGGCCATAGAAGAAATTGTTACCAGC
CTTTGTCCACTTCCAGCATGCGTGAACTTTGATTGTGCCAAATGTGGACA
AGTCCTTGAATGTTATGTCAATTCAGGATTCGACGAACTGGACGCGGCAA
TATGTGAGACAGTGCTCGATGAATCTCTATTCTGCAGTTCTCGCAGAGGA
CGCGGCACATCGTGCCTGCAGCAGTGCAGTGGTCGTCAGGGCGTCAAATG
TATCCCAGGGTTAAATTTCGGATCTTGTCCGCAGATGATTGGAGCTAGTC
CAATGTGTATGGGAGGAGCAGGAGGGAATGGGGAACGTCCAGCCGATCTT
AGCAACTTTGCCTCGTACCAGGCATGCTTCGCCGATGGCGGGGCATTTGA
AGTGACTTGCCTCAATGCAAAGTGTGAAGATGGCTCTTCCTGTCCCTGTG
CTGAACCGTTTCAGTGA