Ggra4535.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4535.t1
Unique NameGgra4535.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:875005..875802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4535Ggra4535Gracilaria gracilis GNS1m malegenetig00000898_pilon 875005..875802 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4535.t1.start1Ggra4535.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 875005..875007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4535.t1.CDS1Ggra4535.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 875005..875802 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4535.t1.exon1Ggra4535.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 875005..875802 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4535.t1.stop1Ggra4535.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 875800..875802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4535.t1Ggra4535.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 875005..875802 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4535.t1 ID=Ggra4535.t1|Name=Ggra4535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=266bp
MVLEGSGLLKFFHSLPWDDFLHAHLNSIPPQELNTPATNIKAALNDEDAE
NLQFDDNDDKEGFVPILKEFYLEFGFAKRSVDEICDDLRRTWSAQSSEDQ
VFIAVGTALDWEFLLEKKFGLTRIIARTLDDIGLTCVQVSDSSGNPTRFY
ASRIRKPEAIEQMLAFWESCVPVPTVRGFVGRFYAEDREKREDHFQNVWR
NEELRSLEATELKLLHVSRTMTCRFHLLVRELVVFYQGFCLRGLAIVRML
QKPTPFLLRPKAWAQ*
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spliced messenger RNA

>Ggra4535.t1 ID=Ggra4535.t1|Name=Ggra4535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000898_pilon:875005..875802+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggtccttgaaggaagtggcctcctgaaatttttccattcgttaccatg
ggacgatttccttcacgcccaccttaattcaatcccacctcaagagctaa
atactccagcgacaaacattaaggcggcactcaacgacgaagatgcagag
aacctccaattcgatgacaatgatgacaaagaaggttttgtccctattct
gaaagaattttaccttgagtttggctttgctaagagaagcgtcgatgaaa
tttgcgatgatctccgccgaacttggtctgcccaaagttcggaagatcaa
gtgtttatcgcagttggtacggctctggattgggagtttctccttgagaa
aaagttcggtctcactagaattattgctcgaactcttgacgacattggtt
tgacctgcgtccaggtaagcgatagctctggaaacccgacgcgtttctat
gcatctcgaattcggaagcctgaggctattgagcaaatgttggctttctg
ggaatcttgcgtcccagtacccactgtgagggggttcgtagggcggttct
atgccgaagacagagaaaagcgtgaggatcattttcaaaacgtgtggaga
aatgaagagcttcgttctctcgaggcaaccgagttaaaacttttgcatgt
ttcgagaacaatgacttgccggtttcaccttctggtgagggagctcgtcg
ttttttatcaaggcttttgcttgcgcggtttggcgattgtacgaatgttg
caaaaaccaactccgtttctactccggccgaaagcatgggcgcaatga
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protein sequence of Ggra4535.t1

>Ggra4535.t1 ID=Ggra4535.t1|Name=Ggra4535.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MVLEGSGLLKFFHSLPWDDFLHAHLNSIPPQELNTPATNIKAALNDEDAE
NLQFDDNDDKEGFVPILKEFYLEFGFAKRSVDEICDDLRRTWSAQSSEDQ
VFIAVGTALDWEFLLEKKFGLTRIIARTLDDIGLTCVQVSDSSGNPTRFY
ASRIRKPEAIEQMLAFWESCVPVPTVRGFVGRFYAEDREKREDHFQNVWR
NEELRSLEATELKLLHVSRTMTCRFHLLVRELVVFYQGFCLRGLAIVRML
QKPTPFLLRPKAWAQ*
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mRNA from alignment at tig00000898_pilon:875005..875802+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4535.t1 ID=Ggra4535.t1|Name=Ggra4535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000898_pilon:875005..875802+ (Gracilaria gracilis GNS1m male)
atggtccttgaaggaagtggcctcctgaaatttttccattcgttaccatg
ggacgatttccttcacgcccaccttaattcaatcccacctcaagagctaa
atactccagcgacaaacattaaggcggcactcaacgacgaagatgcagag
aacctccaattcgatgacaatgatgacaaagaaggttttgtccctattct
gaaagaattttaccttgagtttggctttgctaagagaagcgtcgatgaaa
tttgcgatgatctccgccgaacttggtctgcccaaagttcggaagatcaa
gtgtttatcgcagttggtacggctctggattgggagtttctccttgagaa
aaagttcggtctcactagaattattgctcgaactcttgacgacattggtt
tgacctgcgtccaggtaagcgatagctctggaaacccgacgcgtttctat
gcatctcgaattcggaagcctgaggctattgagcaaatgttggctttctg
ggaatcttgcgtcccagtacccactgtgagggggttcgtagggcggttct
atgccgaagacagagaaaagcgtgaggatcattttcaaaacgtgtggaga
aatgaagagcttcgttctctcgaggcaaccgagttaaaacttttgcatgt
ttcgagaacaatgacttgccggtttcaccttctggtgagggagctcgtcg
ttttttatcaaggcttttgcttgcgcggtttggcgattgtacgaatgttg
caaaaaccaactccgtttctactccggccgaaagcatgggcgcaatga
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Coding sequence (CDS) from alignment at tig00000898_pilon:875005..875802+

>Ggra4535.t1 ID=Ggra4535.t1|Name=Ggra4535.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000898_pilon:875005..875802+ (Gracilaria gracilis GNS1m male)
atggtccttgaaggaagtggcctcctgaaatttttccattcgttaccatg
ggacgatttccttcacgcccaccttaattcaatcccacctcaagagctaa
atactccagcgacaaacattaaggcggcactcaacgacgaagatgcagag
aacctccaattcgatgacaatgatgacaaagaaggttttgtccctattct
gaaagaattttaccttgagtttggctttgctaagagaagcgtcgatgaaa
tttgcgatgatctccgccgaacttggtctgcccaaagttcggaagatcaa
gtgtttatcgcagttggtacggctctggattgggagtttctccttgagaa
aaagttcggtctcactagaattattgctcgaactcttgacgacattggtt
tgacctgcgtccaggtaagcgatagctctggaaacccgacgcgtttctat
gcatctcgaattcggaagcctgaggctattgagcaaatgttggctttctg
ggaatcttgcgtcccagtacccactgtgagggggttcgtagggcggttct
atgccgaagacagagaaaagcgtgaggatcattttcaaaacgtgtggaga
aatgaagagcttcgttctctcgaggcaaccgagttaaaacttttgcatgt
ttcgagaacaatgacttgccggtttcaccttctggtgagggagctcgtcg
ttttttatcaaggcttttgcttgcgcggtttggcgattgtacgaatgttg
caaaaaccaactccgtttctactccggccgaaagcatgggcgcaatga
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