Ggra4533.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4533.t1
Unique Name	Ggra4533.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	594

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:846956..848737 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4533.OB04G31390.1
PFAMs	Glyco_hydro_47
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K01230
KEGG Reaction	R05982,R06722
KEGG Pathway	ko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG Module	M00073,M00074
GOs	GO:0000139,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005794,GO:0005802,GO:0006491,GO:0006807,GO:0008150,GO:0008152,GO:0009100,GO:0009987,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016787,GO:0016798,GO:0019538,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901564
Evalue	7.12e-102
EggNOG OGs	KOG2204@1\|root,KOG2204@2759\|Eukaryota,37I6P@33090\|Viridiplantae,3GG84@35493\|Streptophyta,3KWUQ@4447\|Liliopsida,3I72N@38820\|Poales
EC	3.2.1.113
Description	Belongs to the glycosyl hydrolase 47 family
COG category	G
CAZy	GH47
BRITE	ko00000,ko00001,ko00002,ko01000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4533	Ggra4533	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 846956..848737 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4533.t1.stop1	Ggra4533.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 846956..846958 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4533.t1.CDS1	Ggra4533.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 846956..848737 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4533.t1.exon1	Ggra4533.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 846956..848737 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4533.t1.start1	Ggra4533.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 848735..848737 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4533.t1	Ggra4533.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 846956..848737 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:846956..848737-
coding sequence from alignment at tig00000898_pilon:846956..848737-

mRNA sequence

>Ggra4533.t1 ID=Ggra4533.t1|Name=Ggra4533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp
MNKRLPHPSGHRKFKSIVTAASPCALPVAMSSSPLSLILILFSVLLTAAV
SFTNKRPQNSSLTLRALQYLNRAPAPEFQHCEGATLLPIGSFVPVDVGGE
NGVKREKIKDAVRHAWDAYERSAWGYDELSPLSKTGKDTFAPHLATTIID
SLSTLYIMGGLEDRYQRARDWVATNLHFSNVGRVIVFETVIRILGGLLSM
YHLSGDVMYLEKAENLGVRLASSFDTDFGLPWPRCHLNRPGFCENHEQLG
DSLYLAEVGSVQLEYRALSHHSTSELSQQLRNVSERVIEVLQRAGAMSGL
SRLKPPHDSLLPFSMSRTTGRYSTNLVTMGAPADSYFEYLVKVWVQGGRK
EKHFWTLFERVVDSMVEVAAYQSRHGDVIVRDVVVSKDGSLQFQNKMDHF
SCYIPGMIVLGMDGLDENDVKRREKWMWLATELTETCYKMYEKSPSGLAG
ENIRLGASGEWRMNGGYNLRPEAVEAFFYMYRYTKNEKYRQYAWNVFESI
ERHCKVEDGGYAAIRTAKSRHPQRVDVMHSFLIAETFKYIYLTFGDGEEI
DLGQWVFNTEAHPLLISPGLSSGERCDKDSARKSSSPMAHDEL*

spliced messenger RNA

>Ggra4533.t1 ID=Ggra4533.t1|Name=Ggra4533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1782bp|location=Sequence derived from alignment at tig00000898_pilon:846956..848737- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGCGTCTGCCCCATCCATCAGGTCATCGAAAGTTCAAGTCCAT
TGTCACAGCCGCGTCACCATGCGCCCTCCCCGTCGCAATGAGCTCCTCTC
CCCTCTCCCTCATTCTTATTCTGTTTTCCGTCCTGCTCACTGCTGCCGTC
TCATTCACAAACAAACGCCCTCAAAATTCTAGTCTCACTCTTCGTGCGTT
ACAGTACTTGAATCGGGCACCTGCTCCCGAGTTTCAACATTGTGAGGGCG
CCACACTACTTCCCATCGGAAGCTTTGTTCCCGTCGATGTGGGCGGCGAG
AACGGGGTGAAAAGGGAGAAGATTAAGGACGCTGTAAGACACGCATGGGA
TGCGTATGAACGAAGTGCATGGGGTTACGATGAATTGTCCCCGCTTTCTA
AAACCGGAAAGGACACCTTTGCACCGCATCTGGCAACCACTATTATCGAC
TCGCTTAGCACATTGTACATAATGGGCGGCTTGGAAGACCGCTATCAGCG
TGCAAGGGATTGGGTGGCTACCAATTTGCACTTTTCAAACGTAGGGCGAG
TTATCGTGTTTGAGACAGTCATTCGAATCTTGGGCGGGCTTCTTTCTATG
TACCATCTTTCCGGAGACGTCATGTACTTGGAGAAGGCCGAGAACCTCGG
AGTGCGACTCGCGTCCAGTTTTGATACCGATTTTGGTCTTCCATGGCCGA
GATGCCATCTCAATCGACCCGGCTTTTGCGAGAATCATGAGCAGTTGGGC
GATAGCCTGTATCTTGCAGAGGTCGGTTCCGTTCAATTGGAATATCGTGC
ACTATCGCACCATTCCACGTCTGAGCTTTCGCAGCAGTTGCGAAATGTGT
CAGAGAGAGTTATAGAGGTTTTGCAACGGGCGGGCGCGATGTCTGGCTTA
TCTAGACTCAAGCCGCCACATGATTCTTTGCTACCGTTTTCAATGTCCAG
GACGACTGGAAGGTATTCTACCAATCTGGTGACGATGGGCGCCCCTGCTG
ACAGTTATTTTGAGTATTTGGTGAAGGTTTGGGTGCAGGGCGGGCGGAAA
GAGAAGCATTTCTGGACTCTATTTGAACGCGTGGTGGACAGCATGGTGGA
GGTTGCGGCTTATCAATCACGCCATGGCGATGTGATTGTGCGGGATGTGG
TGGTTTCAAAGGATGGCTCGCTGCAATTTCAGAACAAGATGGACCATTTC
TCGTGCTATATCCCGGGAATGATTGTACTCGGAATGGATGGCTTGGACGA
GAATGATGTGAAACGGCGCGAAAAATGGATGTGGTTGGCGACTGAGTTGA
CGGAGACTTGCTACAAGATGTACGAAAAGTCACCGAGTGGACTTGCAGGC
GAAAATATACGGCTGGGTGCAAGCGGTGAGTGGCGCATGAATGGAGGATA
CAATCTGCGGCCTGAGGCGGTTGAGGCGTTTTTCTACATGTACAGATACA
CTAAGAATGAAAAGTATCGGCAGTATGCGTGGAATGTATTTGAGAGTATT
GAGCGGCATTGTAAGGTAGAGGACGGGGGCTATGCGGCAATTCGCACGGC
GAAGAGTCGACATCCGCAGAGAGTGGACGTGATGCATTCATTCTTGATCG
CTGAGACGTTCAAGTACATTTACTTGACGTTCGGCGACGGGGAGGAGATT
GATTTGGGGCAATGGGTGTTCAATACCGAGGCACATCCGCTGCTGATTTC
GCCGGGGCTGAGCAGCGGGGAACGATGCGACAAGGACAGCGCGCGAAAAA
GCTCTTCACCAATGGCACACGACGAATTATAA

protein sequence of Ggra4533.t1

>Ggra4533.t1 ID=Ggra4533.t1|Name=Ggra4533.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=594bp
MNKRLPHPSGHRKFKSIVTAASPCALPVAMSSSPLSLILILFSVLLTAAV
SFTNKRPQNSSLTLRALQYLNRAPAPEFQHCEGATLLPIGSFVPVDVGGE
NGVKREKIKDAVRHAWDAYERSAWGYDELSPLSKTGKDTFAPHLATTIID
SLSTLYIMGGLEDRYQRARDWVATNLHFSNVGRVIVFETVIRILGGLLSM
YHLSGDVMYLEKAENLGVRLASSFDTDFGLPWPRCHLNRPGFCENHEQLG
DSLYLAEVGSVQLEYRALSHHSTSELSQQLRNVSERVIEVLQRAGAMSGL
SRLKPPHDSLLPFSMSRTTGRYSTNLVTMGAPADSYFEYLVKVWVQGGRK
EKHFWTLFERVVDSMVEVAAYQSRHGDVIVRDVVVSKDGSLQFQNKMDHF
SCYIPGMIVLGMDGLDENDVKRREKWMWLATELTETCYKMYEKSPSGLAG
ENIRLGASGEWRMNGGYNLRPEAVEAFFYMYRYTKNEKYRQYAWNVFESI
ERHCKVEDGGYAAIRTAKSRHPQRVDVMHSFLIAETFKYIYLTFGDGEEI
DLGQWVFNTEAHPLLISPGLSSGERCDKDSARKSSSPMAHDEL*

mRNA from alignment at tig00000898_pilon:846956..848737-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4533.t1 ID=Ggra4533.t1|Name=Ggra4533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1782bp|location=Sequence derived from alignment at tig00000898_pilon:846956..848737- (Gracilaria gracilis GNS1m male)
ATGAACAAGCGTCTGCCCCATCCATCAGGTCATCGAAAGTTCAAGTCCAT
TGTCACAGCCGCGTCACCATGCGCCCTCCCCGTCGCAATGAGCTCCTCTC
CCCTCTCCCTCATTCTTATTCTGTTTTCCGTCCTGCTCACTGCTGCCGTC
TCATTCACAAACAAACGCCCTCAAAATTCTAGTCTCACTCTTCGTGCGTT
ACAGTACTTGAATCGGGCACCTGCTCCCGAGTTTCAACATTGTGAGGGCG
CCACACTACTTCCCATCGGAAGCTTTGTTCCCGTCGATGTGGGCGGCGAG
AACGGGGTGAAAAGGGAGAAGATTAAGGACGCTGTAAGACACGCATGGGA
TGCGTATGAACGAAGTGCATGGGGTTACGATGAATTGTCCCCGCTTTCTA
AAACCGGAAAGGACACCTTTGCACCGCATCTGGCAACCACTATTATCGAC
TCGCTTAGCACATTGTACATAATGGGCGGCTTGGAAGACCGCTATCAGCG
TGCAAGGGATTGGGTGGCTACCAATTTGCACTTTTCAAACGTAGGGCGAG
TTATCGTGTTTGAGACAGTCATTCGAATCTTGGGCGGGCTTCTTTCTATG
TACCATCTTTCCGGAGACGTCATGTACTTGGAGAAGGCCGAGAACCTCGG
AGTGCGACTCGCGTCCAGTTTTGATACCGATTTTGGTCTTCCATGGCCGA
GATGCCATCTCAATCGACCCGGCTTTTGCGAGAATCATGAGCAGTTGGGC
GATAGCCTGTATCTTGCAGAGGTCGGTTCCGTTCAATTGGAATATCGTGC
ACTATCGCACCATTCCACGTCTGAGCTTTCGCAGCAGTTGCGAAATGTGT
CAGAGAGAGTTATAGAGGTTTTGCAACGGGCGGGCGCGATGTCTGGCTTA
TCTAGACTCAAGCCGCCACATGATTCTTTGCTACCGTTTTCAATGTCCAG
GACGACTGGAAGGTATTCTACCAATCTGGTGACGATGGGCGCCCCTGCTG
ACAGTTATTTTGAGTATTTGGTGAAGGTTTGGGTGCAGGGCGGGCGGAAA
GAGAAGCATTTCTGGACTCTATTTGAACGCGTGGTGGACAGCATGGTGGA
GGTTGCGGCTTATCAATCACGCCATGGCGATGTGATTGTGCGGGATGTGG
TGGTTTCAAAGGATGGCTCGCTGCAATTTCAGAACAAGATGGACCATTTC
TCGTGCTATATCCCGGGAATGATTGTACTCGGAATGGATGGCTTGGACGA
GAATGATGTGAAACGGCGCGAAAAATGGATGTGGTTGGCGACTGAGTTGA
CGGAGACTTGCTACAAGATGTACGAAAAGTCACCGAGTGGACTTGCAGGC
GAAAATATACGGCTGGGTGCAAGCGGTGAGTGGCGCATGAATGGAGGATA
CAATCTGCGGCCTGAGGCGGTTGAGGCGTTTTTCTACATGTACAGATACA
CTAAGAATGAAAAGTATCGGCAGTATGCGTGGAATGTATTTGAGAGTATT
GAGCGGCATTGTAAGGTAGAGGACGGGGGCTATGCGGCAATTCGCACGGC
GAAGAGTCGACATCCGCAGAGAGTGGACGTGATGCATTCATTCTTGATCG
CTGAGACGTTCAAGTACATTTACTTGACGTTCGGCGACGGGGAGGAGATT
GATTTGGGGCAATGGGTGTTCAATACCGAGGCACATCCGCTGCTGATTTC
GCCGGGGCTGAGCAGCGGGGAACGATGCGACAAGGACAGCGCGCGAAAAA
GCTCTTCACCAATGGCACACGACGAATTATAA

Coding sequence (CDS) from alignment at tig00000898_pilon:846956..848737-

>Ggra4533.t1 ID=Ggra4533.t1|Name=Ggra4533.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1782bp|location=Sequence derived from alignment at tig00000898_pilon:846956..848737- (Gracilaria gracilis GNS1m male)
ATGAACAAGCGTCTGCCCCATCCATCAGGTCATCGAAAGTTCAAGTCCAT
TGTCACAGCCGCGTCACCATGCGCCCTCCCCGTCGCAATGAGCTCCTCTC
CCCTCTCCCTCATTCTTATTCTGTTTTCCGTCCTGCTCACTGCTGCCGTC
TCATTCACAAACAAACGCCCTCAAAATTCTAGTCTCACTCTTCGTGCGTT
ACAGTACTTGAATCGGGCACCTGCTCCCGAGTTTCAACATTGTGAGGGCG
CCACACTACTTCCCATCGGAAGCTTTGTTCCCGTCGATGTGGGCGGCGAG
AACGGGGTGAAAAGGGAGAAGATTAAGGACGCTGTAAGACACGCATGGGA
TGCGTATGAACGAAGTGCATGGGGTTACGATGAATTGTCCCCGCTTTCTA
AAACCGGAAAGGACACCTTTGCACCGCATCTGGCAACCACTATTATCGAC
TCGCTTAGCACATTGTACATAATGGGCGGCTTGGAAGACCGCTATCAGCG
TGCAAGGGATTGGGTGGCTACCAATTTGCACTTTTCAAACGTAGGGCGAG
TTATCGTGTTTGAGACAGTCATTCGAATCTTGGGCGGGCTTCTTTCTATG
TACCATCTTTCCGGAGACGTCATGTACTTGGAGAAGGCCGAGAACCTCGG
AGTGCGACTCGCGTCCAGTTTTGATACCGATTTTGGTCTTCCATGGCCGA
GATGCCATCTCAATCGACCCGGCTTTTGCGAGAATCATGAGCAGTTGGGC
GATAGCCTGTATCTTGCAGAGGTCGGTTCCGTTCAATTGGAATATCGTGC
ACTATCGCACCATTCCACGTCTGAGCTTTCGCAGCAGTTGCGAAATGTGT
CAGAGAGAGTTATAGAGGTTTTGCAACGGGCGGGCGCGATGTCTGGCTTA
TCTAGACTCAAGCCGCCACATGATTCTTTGCTACCGTTTTCAATGTCCAG
GACGACTGGAAGGTATTCTACCAATCTGGTGACGATGGGCGCCCCTGCTG
ACAGTTATTTTGAGTATTTGGTGAAGGTTTGGGTGCAGGGCGGGCGGAAA
GAGAAGCATTTCTGGACTCTATTTGAACGCGTGGTGGACAGCATGGTGGA
GGTTGCGGCTTATCAATCACGCCATGGCGATGTGATTGTGCGGGATGTGG
TGGTTTCAAAGGATGGCTCGCTGCAATTTCAGAACAAGATGGACCATTTC
TCGTGCTATATCCCGGGAATGATTGTACTCGGAATGGATGGCTTGGACGA
GAATGATGTGAAACGGCGCGAAAAATGGATGTGGTTGGCGACTGAGTTGA
CGGAGACTTGCTACAAGATGTACGAAAAGTCACCGAGTGGACTTGCAGGC
GAAAATATACGGCTGGGTGCAAGCGGTGAGTGGCGCATGAATGGAGGATA
CAATCTGCGGCCTGAGGCGGTTGAGGCGTTTTTCTACATGTACAGATACA
CTAAGAATGAAAAGTATCGGCAGTATGCGTGGAATGTATTTGAGAGTATT
GAGCGGCATTGTAAGGTAGAGGACGGGGGCTATGCGGCAATTCGCACGGC
GAAGAGTCGACATCCGCAGAGAGTGGACGTGATGCATTCATTCTTGATCG
CTGAGACGTTCAAGTACATTTACTTGACGTTCGGCGACGGGGAGGAGATT
GATTTGGGGCAATGGGTGTTCAATACCGAGGCACATCCGCTGCTGATTTC
GCCGGGGCTGAGCAGCGGGGAACGATGCGACAAGGACAGCGCGCGAAAAA
GCTCTTCACCAATGGCACACGACGAATTATAA