Ggra4530.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4530.t1
Unique NameGgra4530.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:843915..844790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO357CT
Preferred nameDGK1
PFAMsCTP_transf_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K16368
KEGG ReactionR09944
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046473,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901576
Evalue1.89e-24
EggNOG OGsCOG0170@1|root,KOG4453@2759|Eukaryota
EC2.7.1.174
Descriptionphytol kinase activity
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4530Ggra4530Gracilaria gracilis GNS1m malegenetig00000898_pilon 843915..844790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4530.t1Ggra4530.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 843915..844790 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4530.t1.stop1Ggra4530.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 843915..843917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4530.t1.CDS1Ggra4530.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 843915..844607 -
Ggra4530.t1.CDS2Ggra4530.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 844695..844790 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4530.t1.exon1Ggra4530.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 843915..844607 -
Ggra4530.t1.exon2Ggra4530.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 844695..844790 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4530.t1.intron1Ggra4530.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 844608..844694 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4530.t1.start1Ggra4530.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 844788..844790 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4530.t1 ID=Ggra4530.t1|Name=Ggra4530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=263bp
MTRPLAPSALPPRADVISSALPTRKAFHFSRKLFHLLSGFGYAFLTRNLA
SATWRPFMFVLVLLVFVVELSRIRRPNGFVNRVVLSSFKSFMRRHEAKQF
SGMLYYTLGVAITASYFSNTAACVGMLSLCIADPVAALVGFSFETVLPEA
RLPNGKSAAGFVFGAFAAILTVLAAFCCATQSTMDLREALIMSVPIGIGA
AFTEVIIPSPQLLLPFRFVPLGLDDNLFIPVVTAAVCEYLLEKRLHHVDL
SPFLLCKSSATF*
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spliced messenger RNA

>Ggra4530.t1 ID=Ggra4530.t1|Name=Ggra4530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000898_pilon:843915..844790- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGACCGTTGGCGCCGTCCGCCTTGCCTCCGCGCGCTGACGTCAT
TTCCAGCGCTTTGCCTACGCGCAAGGCGTTCCATTTCTCCAGAAAGCTCT
TCCACTTGCTCAGCGGTTTTGGCTACGCCTTTCTCACGCGCAATCTGGCA
TCTGCCACATGGCGCCCGTTCATGTTCGTGCTGGTGTTGCTGGTGTTCGT
GGTCGAGCTGTCTCGCATCCGTCGTCCAAATGGGTTTGTGAATCGCGTGG
TGCTCTCCTCGTTCAAGTCGTTCATGCGACGACACGAGGCAAAGCAGTTT
TCGGGCATGCTTTACTACACGCTGGGCGTCGCTATCACCGCCTCGTACTT
CTCCAACACAGCCGCCTGCGTGGGCATGCTGTCACTGTGTATAGCCGATC
CGGTGGCGGCGTTGGTCGGCTTTTCGTTTGAAACAGTGCTTCCAGAAGCG
CGCCTTCCCAACGGCAAGTCCGCCGCCGGCTTTGTATTCGGCGCGTTCGC
CGCCATCCTCACCGTACTGGCTGCGTTTTGTTGCGCCACGCAAAGCACCA
TGGACCTCAGGGAGGCGTTGATCATGTCGGTTCCGATTGGAATCGGCGCC
GCGTTCACAGAGGTGATCATTCCGTCGCCGCAGCTGTTGTTGCCATTTCG
TTTTGTGCCGCTTGGGTTGGATGACAACCTGTTCATCCCCGTTGTGACGG
CGGCCGTTTGCGAGTACCTTTTGGAGAAACGGCTGCATCATGTTGATCTG
TCGCCGTTTTTGTTGTGCAAATCGTCGGCGACGTTTTGA
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protein sequence of Ggra4530.t1

>Ggra4530.t1 ID=Ggra4530.t1|Name=Ggra4530.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=263bp
MTRPLAPSALPPRADVISSALPTRKAFHFSRKLFHLLSGFGYAFLTRNLA
SATWRPFMFVLVLLVFVVELSRIRRPNGFVNRVVLSSFKSFMRRHEAKQF
SGMLYYTLGVAITASYFSNTAACVGMLSLCIADPVAALVGFSFETVLPEA
RLPNGKSAAGFVFGAFAAILTVLAAFCCATQSTMDLREALIMSVPIGIGA
AFTEVIIPSPQLLLPFRFVPLGLDDNLFIPVVTAAVCEYLLEKRLHHVDL
SPFLLCKSSATF*
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mRNA from alignment at tig00000898_pilon:843915..844790-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4530.t1 ID=Ggra4530.t1|Name=Ggra4530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000898_pilon:843915..844790- (Gracilaria gracilis GNS1m male)
ATGACTCGACCGTTGGCGCCGTCCGCCTTGCCTCCGCGCGCTGACGTCAT
TTCCAGCGCTTTGCCTACGCGCAAGGCGTTCCATTTCTCCAGAAAGGTGC
GTGGCCGTGGCCGAATCGCTGCTACGTCTTTTCCTCTGCTGTGCTAACCT
TACATTTATATATACAATATATATACCTTGCAGCTCTTCCACTTGCTCAG
CGGTTTTGGCTACGCCTTTCTCACGCGCAATCTGGCATCTGCCACATGGC
GCCCGTTCATGTTCGTGCTGGTGTTGCTGGTGTTCGTGGTCGAGCTGTCT
CGCATCCGTCGTCCAAATGGGTTTGTGAATCGCGTGGTGCTCTCCTCGTT
CAAGTCGTTCATGCGACGACACGAGGCAAAGCAGTTTTCGGGCATGCTTT
ACTACACGCTGGGCGTCGCTATCACCGCCTCGTACTTCTCCAACACAGCC
GCCTGCGTGGGCATGCTGTCACTGTGTATAGCCGATCCGGTGGCGGCGTT
GGTCGGCTTTTCGTTTGAAACAGTGCTTCCAGAAGCGCGCCTTCCCAACG
GCAAGTCCGCCGCCGGCTTTGTATTCGGCGCGTTCGCCGCCATCCTCACC
GTACTGGCTGCGTTTTGTTGCGCCACGCAAAGCACCATGGACCTCAGGGA
GGCGTTGATCATGTCGGTTCCGATTGGAATCGGCGCCGCGTTCACAGAGG
TGATCATTCCGTCGCCGCAGCTGTTGTTGCCATTTCGTTTTGTGCCGCTT
GGGTTGGATGACAACCTGTTCATCCCCGTTGTGACGGCGGCCGTTTGCGA
GTACCTTTTGGAGAAACGGCTGCATCATGTTGATCTGTCGCCGTTTTTGT
TGTGCAAATCGTCGGCGACGTTTTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:843915..844790-

>Ggra4530.t1 ID=Ggra4530.t1|Name=Ggra4530.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00000898_pilon:843915..844790- (Gracilaria gracilis GNS1m male)
ATGACTCGACCGTTGGCGCCGTCCGCCTTGCCTCCGCGCGCTGACGTCAT
TTCCAGCGCTTTGCCTACGCGCAAGGCGTTCCATTTCTCCAGAAAGCTCT
TCCACTTGCTCAGCGGTTTTGGCTACGCCTTTCTCACGCGCAATCTGGCA
TCTGCCACATGGCGCCCGTTCATGTTCGTGCTGGTGTTGCTGGTGTTCGT
GGTCGAGCTGTCTCGCATCCGTCGTCCAAATGGGTTTGTGAATCGCGTGG
TGCTCTCCTCGTTCAAGTCGTTCATGCGACGACACGAGGCAAAGCAGTTT
TCGGGCATGCTTTACTACACGCTGGGCGTCGCTATCACCGCCTCGTACTT
CTCCAACACAGCCGCCTGCGTGGGCATGCTGTCACTGTGTATAGCCGATC
CGGTGGCGGCGTTGGTCGGCTTTTCGTTTGAAACAGTGCTTCCAGAAGCG
CGCCTTCCCAACGGCAAGTCCGCCGCCGGCTTTGTATTCGGCGCGTTCGC
CGCCATCCTCACCGTACTGGCTGCGTTTTGTTGCGCCACGCAAAGCACCA
TGGACCTCAGGGAGGCGTTGATCATGTCGGTTCCGATTGGAATCGGCGCC
GCGTTCACAGAGGTGATCATTCCGTCGCCGCAGCTGTTGTTGCCATTTCG
TTTTGTGCCGCTTGGGTTGGATGACAACCTGTTCATCCCCGTTGTGACGG
CGGCCGTTTGCGAGTACCTTTTGGAGAAACGGCTGCATCATGTTGATCTG
TCGCCGTTTTTGTTGTGCAAATCGTCGGCGACGTTTTGA
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