Ggra4526.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4526.t1
Unique NameGgra4526.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:832940..834292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog101852.XP_008084549.1
PFAMsTrypsin
Max annot lvl4751|Fungi
KEGG koko:K01312
KEGG Pathwayko04080,ko04972,ko04974,ko05164,map04080,map04972,map04974,map05164
Evalue9.37e-30
EggNOG OGsCOG5640@1|root,KOG3627@2759|Eukaryota,38F79@33154|Opisthokonta,3P4UY@4751|Fungi,3RK2B@4890|Ascomycota
EC3.4.21.4
DescriptionBelongs to the peptidase S1 family
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4526Ggra4526Gracilaria gracilis GNS1m malegenetig00000898_pilon 832940..834292 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4526.t1.start1Ggra4526.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 832940..832942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4526.t1.CDS1Ggra4526.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 832940..834292 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4526.t1.exon1Ggra4526.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 832940..834292 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4526.t1.stop1Ggra4526.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 834290..834292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4526.t1Ggra4526.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 832940..834292 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4526.t1 ID=Ggra4526.t1|Name=Ggra4526.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=451bp
MLPPPSARSPAQPRIVGGLFSDAYIKSHLVSFYDEGCAGSLLSARWAVTA
AHCLVKPTSKAYVSGQTSSSGTLVSIDAVYSHPQFFLPKHDIALVKFAAD
VPPGSRFVRLNVNGDVPRINEFSRVAGYGYTDEGFDPAHDARLRQVDVPV
VDTAACKSGYHKVDSFLSSGISARMHICAGYATGGCDSCNADSGGPLVVY
DDRLNLVQIALVSFGYGCARAELPGGYTRLSSYIDWIKSVGAEFESASKR
TAVMMNADPAAAAANASDASTQPPPPPASPPPSAPSPPPPAAPALTPSSS
SPPPPPPPQPVQPQPSMQPEASAAPSEASQGTMPGTAPPATESSTAALPA
ASSGAQQPPSGPQLAPTASVFDDEFDDEFDDEDGLLPSAEAQKAGAPPSG
ELFVEVEEDGANVGGIVGGVVGSLSGVGVVVVIVCLRIRKQRTSSMAAAV
*
back to top

spliced messenger RNA

>Ggra4526.t1 ID=Ggra4526.t1|Name=Ggra4526.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000898_pilon:832940..834292+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgctgccgccgccatccgcgcgctcgccggcgcagccgcGCATCGTGGG
CGGCTTGTTTTCCGACGCCTACATCAAGTCGCACCTCGTGTCCTTCTACG
ACGAGGGCTGCGCCGGCTCGCTGCTCTCCGCGCGCTGGGCCGTCACCGCC
GCGCACTGTCTGGTCAAGCCCACATCCAAGGCGTACGTGTCCGGCCAGAC
GTCCAGCTCCGGCACGCTGGTGTCCATCGACGCCGTGTACTCGCACCCGC
AGTTCTTCCTGCCCAAGCACGACATTGCGCTGGTCAAGTTTGCCGCCGAC
GTGCCGCCCGGATCGCGCTTCGTGCGCCTCAACGTCAACGGCGACGTGCC
GCGCATCAACGAATTCTCGCGCGTCGCCGGCTATGGATACACCGACGAGG
GCTTCGACCCCGCGCATGACGCGCGCCTCCGTCAGGTGGACGTGCCCGTC
GTCGACACCGCCGCCTGCAAGAGCGGCTACCACAAGGTGGACAGCTTCCT
GTCGTCGGGCATCAGCGCGCGCATGCACATCTGCGCGGGCTATGCAACGG
GCGGCTGCGATAGCTGCAACGCAGACTCGGGCGGCCCGCTCGTCGTGTAC
GACGATCGGCTCAACTTGGTGCAGATCGCGCTGGTGTCTTTCGGCTACGG
CTGCGCGCGCGCCGAGCTGCCTGGTGGCTACACGCGCCTCTCGTCGTACA
TTGACTGGATCAAGTCGGTGGGCGCCGAGTTTGAGTCCGCATCCAAGCGC
ACCGCCGTCATGATGAAcgccgatcccgccgcagccgccgccaatgcttc
tgatgcgtctacgcagccgccgccgccgcccgcttcaccgccgccCAGCG
cgccgtctcctccaccgcctgccgcgccggcgctcacgccgtcgtcgtcg
tcgccgccgccgccgccgccgccacagccggtgcagccacagccatcgat
gcagccggaggcgtcggcggcaccgAGCGAGGCGTCGCAGGGCACCATGC
CAGGCACGGCGCCGCCCGCGACGGAAAGCTCGACGGCGGCGCTGCCCGCG
GCGTCATCCGGCGCGCAACAGCCGCCCAGCGGGCCGCAACTGGCGCCCAC
GGCCAGCGTGTTTGACGACGAGTTTGACGATGAGTTTGACGACGAAGACG
GGCTGCTGCCCAGCGCGGAGGCACAGAAGGCGGGTGCTCCGCCGTCCGGC
GAGCTGTTTGTGGAGGTTGAGGAGGATGGGGCGAATGTTGGCGGGATTGT
GGGCGGGGTTGTTGGTTCGCTGTCGGGGGTGGGGGTGGTTGTTGTGATAG
TTTGTTTGAGGATACGGAAACAGAGAACGTCTTCGATGGCGGCGGCCGTT
TAG
back to top

protein sequence of Ggra4526.t1

>Ggra4526.t1 ID=Ggra4526.t1|Name=Ggra4526.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=451bp
MLPPPSARSPAQPRIVGGLFSDAYIKSHLVSFYDEGCAGSLLSARWAVTA
AHCLVKPTSKAYVSGQTSSSGTLVSIDAVYSHPQFFLPKHDIALVKFAAD
VPPGSRFVRLNVNGDVPRINEFSRVAGYGYTDEGFDPAHDARLRQVDVPV
VDTAACKSGYHKVDSFLSSGISARMHICAGYATGGCDSCNADSGGPLVVY
DDRLNLVQIALVSFGYGCARAELPGGYTRLSSYIDWIKSVGAEFESASKR
TAVMMNADPAAAAANASDASTQPPPPPASPPPSAPSPPPPAAPALTPSSS
SPPPPPPPQPVQPQPSMQPEASAAPSEASQGTMPGTAPPATESSTAALPA
ASSGAQQPPSGPQLAPTASVFDDEFDDEFDDEDGLLPSAEAQKAGAPPSG
ELFVEVEEDGANVGGIVGGVVGSLSGVGVVVVIVCLRIRKQRTSSMAAAV
*
back to top

mRNA from alignment at tig00000898_pilon:832940..834292+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4526.t1 ID=Ggra4526.t1|Name=Ggra4526.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000898_pilon:832940..834292+ (Gracilaria gracilis GNS1m male)
atgctgccgccgccatccgcgcgctcgccggcgcagccgcGCATCGTGGG
CGGCTTGTTTTCCGACGCCTACATCAAGTCGCACCTCGTGTCCTTCTACG
ACGAGGGCTGCGCCGGCTCGCTGCTCTCCGCGCGCTGGGCCGTCACCGCC
GCGCACTGTCTGGTCAAGCCCACATCCAAGGCGTACGTGTCCGGCCAGAC
GTCCAGCTCCGGCACGCTGGTGTCCATCGACGCCGTGTACTCGCACCCGC
AGTTCTTCCTGCCCAAGCACGACATTGCGCTGGTCAAGTTTGCCGCCGAC
GTGCCGCCCGGATCGCGCTTCGTGCGCCTCAACGTCAACGGCGACGTGCC
GCGCATCAACGAATTCTCGCGCGTCGCCGGCTATGGATACACCGACGAGG
GCTTCGACCCCGCGCATGACGCGCGCCTCCGTCAGGTGGACGTGCCCGTC
GTCGACACCGCCGCCTGCAAGAGCGGCTACCACAAGGTGGACAGCTTCCT
GTCGTCGGGCATCAGCGCGCGCATGCACATCTGCGCGGGCTATGCAACGG
GCGGCTGCGATAGCTGCAACGCAGACTCGGGCGGCCCGCTCGTCGTGTAC
GACGATCGGCTCAACTTGGTGCAGATCGCGCTGGTGTCTTTCGGCTACGG
CTGCGCGCGCGCCGAGCTGCCTGGTGGCTACACGCGCCTCTCGTCGTACA
TTGACTGGATCAAGTCGGTGGGCGCCGAGTTTGAGTCCGCATCCAAGCGC
ACCGCCGTCATGATGAAcgccgatcccgccgcagccgccgccaatgcttc
tgatgcgtctacgcagccgccgccgccgcccgcttcaccgccgccCAGCG
cgccgtctcctccaccgcctgccgcgccggcgctcacgccgtcgtcgtcg
tcgccgccgccgccgccgccgccacagccggtgcagccacagccatcgat
gcagccggaggcgtcggcggcaccgAGCGAGGCGTCGCAGGGCACCATGC
CAGGCACGGCGCCGCCCGCGACGGAAAGCTCGACGGCGGCGCTGCCCGCG
GCGTCATCCGGCGCGCAACAGCCGCCCAGCGGGCCGCAACTGGCGCCCAC
GGCCAGCGTGTTTGACGACGAGTTTGACGATGAGTTTGACGACGAAGACG
GGCTGCTGCCCAGCGCGGAGGCACAGAAGGCGGGTGCTCCGCCGTCCGGC
GAGCTGTTTGTGGAGGTTGAGGAGGATGGGGCGAATGTTGGCGGGATTGT
GGGCGGGGTTGTTGGTTCGCTGTCGGGGGTGGGGGTGGTTGTTGTGATAG
TTTGTTTGAGGATACGGAAACAGAGAACGTCTTCGATGGCGGCGGCCGTT
TAG
back to top

Coding sequence (CDS) from alignment at tig00000898_pilon:832940..834292+

>Ggra4526.t1 ID=Ggra4526.t1|Name=Ggra4526.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1353bp|location=Sequence derived from alignment at tig00000898_pilon:832940..834292+ (Gracilaria gracilis GNS1m male)
atgctgccgccgccatccgcgcgctcgccggcgcagccgcGCATCGTGGG
CGGCTTGTTTTCCGACGCCTACATCAAGTCGCACCTCGTGTCCTTCTACG
ACGAGGGCTGCGCCGGCTCGCTGCTCTCCGCGCGCTGGGCCGTCACCGCC
GCGCACTGTCTGGTCAAGCCCACATCCAAGGCGTACGTGTCCGGCCAGAC
GTCCAGCTCCGGCACGCTGGTGTCCATCGACGCCGTGTACTCGCACCCGC
AGTTCTTCCTGCCCAAGCACGACATTGCGCTGGTCAAGTTTGCCGCCGAC
GTGCCGCCCGGATCGCGCTTCGTGCGCCTCAACGTCAACGGCGACGTGCC
GCGCATCAACGAATTCTCGCGCGTCGCCGGCTATGGATACACCGACGAGG
GCTTCGACCCCGCGCATGACGCGCGCCTCCGTCAGGTGGACGTGCCCGTC
GTCGACACCGCCGCCTGCAAGAGCGGCTACCACAAGGTGGACAGCTTCCT
GTCGTCGGGCATCAGCGCGCGCATGCACATCTGCGCGGGCTATGCAACGG
GCGGCTGCGATAGCTGCAACGCAGACTCGGGCGGCCCGCTCGTCGTGTAC
GACGATCGGCTCAACTTGGTGCAGATCGCGCTGGTGTCTTTCGGCTACGG
CTGCGCGCGCGCCGAGCTGCCTGGTGGCTACACGCGCCTCTCGTCGTACA
TTGACTGGATCAAGTCGGTGGGCGCCGAGTTTGAGTCCGCATCCAAGCGC
ACCGCCGTCATGATGAAcgccgatcccgccgcagccgccgccaatgcttc
tgatgcgtctacgcagccgccgccgccgcccgcttcaccgccgccCAGCG
cgccgtctcctccaccgcctgccgcgccggcgctcacgccgtcgtcgtcg
tcgccgccgccgccgccgccgccacagccggtgcagccacagccatcgat
gcagccggaggcgtcggcggcaccgAGCGAGGCGTCGCAGGGCACCATGC
CAGGCACGGCGCCGCCCGCGACGGAAAGCTCGACGGCGGCGCTGCCCGCG
GCGTCATCCGGCGCGCAACAGCCGCCCAGCGGGCCGCAACTGGCGCCCAC
GGCCAGCGTGTTTGACGACGAGTTTGACGATGAGTTTGACGACGAAGACG
GGCTGCTGCCCAGCGCGGAGGCACAGAAGGCGGGTGCTCCGCCGTCCGGC
GAGCTGTTTGTGGAGGTTGAGGAGGATGGGGCGAATGTTGGCGGGATTGT
GGGCGGGGTTGTTGGTTCGCTGTCGGGGGTGGGGGTGGTTGTTGTGATAG
TTTGTTTGAGGATACGGAAACAGAGAACGTCTTCGATGGCGGCGGCCGTT
TAG
back to top