Ggra4523.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4523.t1
Unique NameGgra4523.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:828436..829527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002681941.1
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0097159,GO:1901363
Evalue1.31e-28
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota
Descriptionubiquitin modification-dependent histone binding
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4523Ggra4523Gracilaria gracilis GNS1m malegenetig00000898_pilon 828436..829527 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4523.t1.start1Ggra4523.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 828436..828438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4523.t1.CDS1Ggra4523.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 828436..829527 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4523.t1.exon1Ggra4523.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 828436..829527 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4523.t1.stop1Ggra4523.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 829525..829527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4523.t1Ggra4523.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 828436..829527 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4523.t1 ID=Ggra4523.t1|Name=Ggra4523.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=364bp
MRCVVVQGKVYNDKGHIICGVLNQHDQPCKRVGKCPFHTERIAICEANAV
NWHLLTARTASSCSEQSVLSAPSDTTFVTTSGETSVCSLLPPPKQHFKRG
WTREEHYLFLEGLHRYGRGNWKQIAGVVSTKTPTQVQSHAQKYFERQAKG
DKHKRSIHDLHLNTDEMQLVRRKMRRRPIGVYEFDVQRREGTATGTATGT
ASVHSMVNGCARMMEEVVIYGGGVTTTAGAAAMAAPALSPALSPALSPAL
SPALSPSPALSPALVASRQYARDGGSDGISYGGNGGGNGVRERTWYTESG
VRRNEAYRAETHLVQQEAKRVRYYAPAHRTDATRLRLGALGEQQQRQQQR
GACDDGMYAREIW*
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spliced messenger RNA

>Ggra4523.t1 ID=Ggra4523.t1|Name=Ggra4523.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000898_pilon:828436..829527+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTGCGTGGTGGTGCAGGGCAAGGTGTACAACGACAAGGGGCACAT
CATCTGCGGCGTGTTGAACCAACACGACCAGCCGTGCAAGCGCGTGGGCA
AGTGCCCGTTTCACACGGAGCGCATCGCCATCTGTGAGGCCAACGCCGTG
AACTGGCACCTGCTGACGGCGCGGACGGCGTCCAGCTGCTCGGAGCAGTC
GGTGCTCTCCGCGCCGTCCGACACCACGTTCGTGACCACGTCGGGTGAAA
CGTCGGTGTGCAGCTTGTTGCCGCCGCCCAAGCAACACTTCAAACGGGGC
TGGACCAGGGAGGAGCATTACCTGTTTCTGGAGGGCTTGCACCGCTACGG
ACGCGGCAACTGGAAGCAGATCGCCGGCGTTGTGAGCACCAAGACGCCTA
CTCAGGTACAGTCGCACGCGCAGAAGTATTTTGAGCGACAGGCAAAAGGC
GATAAGCACAAGCGCTCCATCCACGACCTGCATCTCAACACCGACGAGAT
GCAGCTGGTGCGACGCAAGATGCGGCGTAGACCCATTGGCGTGTACGAGT
TTGATGTGCAAAGGCGTGAgggcacggcgacgggcacggcgacgggcacg
gCGAGCGTGCACTCGATGGTGAACGGATGTGCGCGGATGATGGAGGAGGT
TGTGATCTACGGTGGTGGCGTGACGACGACTGCGGGCGCAGCTGCAATGG
CGGCGCCAGCGCTGTCGCCCGCGCTGTCACCCGCGCTGTCGCCCGCGCTA
TCGCCAGCGCTATCGCCATCTCCAGCGCTATCGCCAGCGCTGGTGGCGTC
GCGGCAGTACGCGCGCGATGGGGGTAGTGACGGTATTAGCTACGGTGGCA
ATGGTGGTGGTAATGGCGTGAGGGAACGGACGTGGTACACAGAGTCGGGT
GTGAGGAGGAATGAGGCGTACCGTGCGGAGACGCACTTGGTGCAGCAGGA
GGCGAAGCGCGTGAGGTACTATGCGCCAGCGCATCGCACGGATGCGACGC
GGCTCCGATTGGGCGCGTTGGGTGAACAACAGCAGCGGCAGCAGCAACGC
GGTGCGTGTGACGATGGCATGTACGCGCGCGAGATTTGGTAG
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protein sequence of Ggra4523.t1

>Ggra4523.t1 ID=Ggra4523.t1|Name=Ggra4523.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MRCVVVQGKVYNDKGHIICGVLNQHDQPCKRVGKCPFHTERIAICEANAV
NWHLLTARTASSCSEQSVLSAPSDTTFVTTSGETSVCSLLPPPKQHFKRG
WTREEHYLFLEGLHRYGRGNWKQIAGVVSTKTPTQVQSHAQKYFERQAKG
DKHKRSIHDLHLNTDEMQLVRRKMRRRPIGVYEFDVQRREGTATGTATGT
ASVHSMVNGCARMMEEVVIYGGGVTTTAGAAAMAAPALSPALSPALSPAL
SPALSPSPALSPALVASRQYARDGGSDGISYGGNGGGNGVRERTWYTESG
VRRNEAYRAETHLVQQEAKRVRYYAPAHRTDATRLRLGALGEQQQRQQQR
GACDDGMYAREIW*
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mRNA from alignment at tig00000898_pilon:828436..829527+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4523.t1 ID=Ggra4523.t1|Name=Ggra4523.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000898_pilon:828436..829527+ (Gracilaria gracilis GNS1m male)
ATGCGCTGCGTGGTGGTGCAGGGCAAGGTGTACAACGACAAGGGGCACAT
CATCTGCGGCGTGTTGAACCAACACGACCAGCCGTGCAAGCGCGTGGGCA
AGTGCCCGTTTCACACGGAGCGCATCGCCATCTGTGAGGCCAACGCCGTG
AACTGGCACCTGCTGACGGCGCGGACGGCGTCCAGCTGCTCGGAGCAGTC
GGTGCTCTCCGCGCCGTCCGACACCACGTTCGTGACCACGTCGGGTGAAA
CGTCGGTGTGCAGCTTGTTGCCGCCGCCCAAGCAACACTTCAAACGGGGC
TGGACCAGGGAGGAGCATTACCTGTTTCTGGAGGGCTTGCACCGCTACGG
ACGCGGCAACTGGAAGCAGATCGCCGGCGTTGTGAGCACCAAGACGCCTA
CTCAGGTACAGTCGCACGCGCAGAAGTATTTTGAGCGACAGGCAAAAGGC
GATAAGCACAAGCGCTCCATCCACGACCTGCATCTCAACACCGACGAGAT
GCAGCTGGTGCGACGCAAGATGCGGCGTAGACCCATTGGCGTGTACGAGT
TTGATGTGCAAAGGCGTGAgggcacggcgacgggcacggcgacgggcacg
gCGAGCGTGCACTCGATGGTGAACGGATGTGCGCGGATGATGGAGGAGGT
TGTGATCTACGGTGGTGGCGTGACGACGACTGCGGGCGCAGCTGCAATGG
CGGCGCCAGCGCTGTCGCCCGCGCTGTCACCCGCGCTGTCGCCCGCGCTA
TCGCCAGCGCTATCGCCATCTCCAGCGCTATCGCCAGCGCTGGTGGCGTC
GCGGCAGTACGCGCGCGATGGGGGTAGTGACGGTATTAGCTACGGTGGCA
ATGGTGGTGGTAATGGCGTGAGGGAACGGACGTGGTACACAGAGTCGGGT
GTGAGGAGGAATGAGGCGTACCGTGCGGAGACGCACTTGGTGCAGCAGGA
GGCGAAGCGCGTGAGGTACTATGCGCCAGCGCATCGCACGGATGCGACGC
GGCTCCGATTGGGCGCGTTGGGTGAACAACAGCAGCGGCAGCAGCAACGC
GGTGCGTGTGACGATGGCATGTACGCGCGCGAGATTTGGTAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:828436..829527+

>Ggra4523.t1 ID=Ggra4523.t1|Name=Ggra4523.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000898_pilon:828436..829527+ (Gracilaria gracilis GNS1m male)
ATGCGCTGCGTGGTGGTGCAGGGCAAGGTGTACAACGACAAGGGGCACAT
CATCTGCGGCGTGTTGAACCAACACGACCAGCCGTGCAAGCGCGTGGGCA
AGTGCCCGTTTCACACGGAGCGCATCGCCATCTGTGAGGCCAACGCCGTG
AACTGGCACCTGCTGACGGCGCGGACGGCGTCCAGCTGCTCGGAGCAGTC
GGTGCTCTCCGCGCCGTCCGACACCACGTTCGTGACCACGTCGGGTGAAA
CGTCGGTGTGCAGCTTGTTGCCGCCGCCCAAGCAACACTTCAAACGGGGC
TGGACCAGGGAGGAGCATTACCTGTTTCTGGAGGGCTTGCACCGCTACGG
ACGCGGCAACTGGAAGCAGATCGCCGGCGTTGTGAGCACCAAGACGCCTA
CTCAGGTACAGTCGCACGCGCAGAAGTATTTTGAGCGACAGGCAAAAGGC
GATAAGCACAAGCGCTCCATCCACGACCTGCATCTCAACACCGACGAGAT
GCAGCTGGTGCGACGCAAGATGCGGCGTAGACCCATTGGCGTGTACGAGT
TTGATGTGCAAAGGCGTGAgggcacggcgacgggcacggcgacgggcacg
gCGAGCGTGCACTCGATGGTGAACGGATGTGCGCGGATGATGGAGGAGGT
TGTGATCTACGGTGGTGGCGTGACGACGACTGCGGGCGCAGCTGCAATGG
CGGCGCCAGCGCTGTCGCCCGCGCTGTCACCCGCGCTGTCGCCCGCGCTA
TCGCCAGCGCTATCGCCATCTCCAGCGCTATCGCCAGCGCTGGTGGCGTC
GCGGCAGTACGCGCGCGATGGGGGTAGTGACGGTATTAGCTACGGTGGCA
ATGGTGGTGGTAATGGCGTGAGGGAACGGACGTGGTACACAGAGTCGGGT
GTGAGGAGGAATGAGGCGTACCGTGCGGAGACGCACTTGGTGCAGCAGGA
GGCGAAGCGCGTGAGGTACTATGCGCCAGCGCATCGCACGGATGCGACGC
GGCTCCGATTGGGCGCGTTGGGTGAACAACAGCAGCGGCAGCAGCAACGC
GGTGCGTGTGACGATGGCATGTACGCGCGCGAGATTTGGTAG
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