Ggra4522.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4522.t1
Unique NameGgra4522.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:826000..827448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G0B1
PFAMsCIA30,NAD_binding_10
Max annot lvl2759|Eukaryota
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Evalue1.52e-95
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
EC2.3.1.48
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
COG categoryGM
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4522Ggra4522Gracilaria gracilis GNS1m malegenetig00000898_pilon 826000..827448 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4522.t1.start1Ggra4522.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 826000..826002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4522.t1.CDS1Ggra4522.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 826000..827448 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4522.t1.exon1Ggra4522.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 826000..827448 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4522.t1.stop1Ggra4522.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 827446..827448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4522.t1Ggra4522.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 826000..827448 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4522.t1 ID=Ggra4522.t1|Name=Ggra4522.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp
MASGDAPTPTPPPSPPSRNPFSAARDFLSGLRRATGLVDDRSDELFDLDR
AQLFEQQDEPPEVLVVGATGQTGRIIVRKLVLRGYKVRVLVRNLYSSTLD
LLGTGVSFVKGSLDDYDSLLEATGDVDKVICAVGAREDDDAERVEYEGTC
KLIRAFHDARVQYYGRSEATKRTLFNFGHEEHLSKWKRVVPEQGADGARP
PRVNFQITGANRVAFMGHVYSTYSGLAEIRTVPARMNLRGYSGFILRCIG
DGKTYLLVVRTAQGVKEGVEYVAAVQSHKNKWESVRVALSSFRAVDMNDG
SRRREAAALDRGDIRQMAIQYRKPAVSPEKDDGRFYLGVDYLKIYRTQEQ
PDFVLVSCASVTARDLSALDEGGLRAAAKDDVTAWKYLAEQRLRNSGLTY
CIVRPGSFTEQPGGNKAIMLEQDGDVSGDISRADVAEICVSSLLDPRACN
LTFDAFESMYAPSAMLPREDVSSMLGRLRPNT*
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spliced messenger RNA

>Ggra4522.t1 ID=Ggra4522.t1|Name=Ggra4522.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000898_pilon:826000..827448+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggcgtccggcgacgcgccgacgccgacgccgccgccgtcgccgccgTC
CAGAAATCCGTTCTCCGCGGCGCGCGACTTTCTGTCGGGGCTGCGGCGCG
CGACGGGGCTGGTGGATGACCGCTCCGACGAGCTGTTCGACCTGGACCGC
GCGCAGCTGTTCGAGCAACAGGACGAGCCGCCGGAGGTGCTGGTGGTGGG
CGCCACCGGGCAGACGGGGCGCATCATTGTGAGGAAGCTGGTGCTGCGCG
GGTACAAGGTGCGTGTGTTGGTGCGAAACCTGTACAGCTCCACTCTGGAC
CTGCTGGGCACCGGCGTGTCGTTCGTCAAGGGTAGCCTCGATGACTACGA
CTCGCTGCTGGAGGCGACCGGCGACGTGGACAAGGTGATCTGCGCGGTGG
GCGCGCGCGAAGACGATGACGCGGAGCGCGTGGAGTATGAGGGCACTTGC
AAGTTGATTCGCGCGTTCCATGACGCGCGCGTGCAGTACTATGGGCGGTC
GGAGGCGACCAAACGCACGCTGTTCAACTTTGGACACGAGGAGCATCTGA
GCAAGTGGAAGCGCGTGGTGCCGGAACAGGGCGCGGACGGCGCCAGGCCG
CCGCGCGTGAACTTTCAGATCACGGGCGCTAACCGCGTGGCGTTCATGGG
GCACGTATATAGCACGTACTCTGGGCTGGCGGAGATCCGCACGGTGCCGG
CGCGCATGAATCTGCGCGGCTATTCCGGGTTCATTCTGCGCTGCATTGGG
GACGGCAAGACGTACCTGCTGGTGGTGCGCACGGCGCAGGGCGTGAAGGA
GGGCGTGGAGTACGTGGCGGCGGTGCAGTCGCACAAGAACAAGTGGGAGT
CGGTGCGGGTGGCGCTGTCGAGCTTCCGCGCGGTGGACATGAACGACGGC
TCTCGACGACGGGAGGCGGCGGCGTTGGACCGCGGGGACATCCGACAGAT
GGCGATCCAGTACCGCAAGCCGGCGGTGTCGCCCGAGAAGGACGACGGGC
GGTTCTACCTGGGGGTGGATTACCTCAAGATCTACCGCACGCAGGAGCAG
CCGGACTTTGTGCTGGTGTCGTGCGCGTCGGTGACGGCGCGCGACCTGTC
GGCGCTGGACGAGGGCGGGCTGCGCGCGGCGGCCAAGGACGACGTGACGG
CGTGGAAGTACCTGGCGGAGCAGCGGCTGCGCAACTCGGGGCTGACGTAC
TGCATCGTGAGGCCGGGCAGCTTCACGGAGCAGCCCGGCGGCAACAAGGC
CATCATGCTGGAGCAGGACGGCGACGTGAGCGGCGACATCAGCCGCGCGG
ACGTGGCCGAAATCTGCGTGAGCTCGTTGCTGGACCCGCGCGCGTGCAAT
CTCACCTTCGACGCCTTTGAGTCCATGTACGCGCCGTCCGCCATGCTGCC
CCGCGAGGACGTCAGCTCCATGCTGGGCCGCCTGCGCCCCAACACCTGA
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protein sequence of Ggra4522.t1

>Ggra4522.t1 ID=Ggra4522.t1|Name=Ggra4522.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=483bp
MASGDAPTPTPPPSPPSRNPFSAARDFLSGLRRATGLVDDRSDELFDLDR
AQLFEQQDEPPEVLVVGATGQTGRIIVRKLVLRGYKVRVLVRNLYSSTLD
LLGTGVSFVKGSLDDYDSLLEATGDVDKVICAVGAREDDDAERVEYEGTC
KLIRAFHDARVQYYGRSEATKRTLFNFGHEEHLSKWKRVVPEQGADGARP
PRVNFQITGANRVAFMGHVYSTYSGLAEIRTVPARMNLRGYSGFILRCIG
DGKTYLLVVRTAQGVKEGVEYVAAVQSHKNKWESVRVALSSFRAVDMNDG
SRRREAAALDRGDIRQMAIQYRKPAVSPEKDDGRFYLGVDYLKIYRTQEQ
PDFVLVSCASVTARDLSALDEGGLRAAAKDDVTAWKYLAEQRLRNSGLTY
CIVRPGSFTEQPGGNKAIMLEQDGDVSGDISRADVAEICVSSLLDPRACN
LTFDAFESMYAPSAMLPREDVSSMLGRLRPNT*
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mRNA from alignment at tig00000898_pilon:826000..827448+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4522.t1 ID=Ggra4522.t1|Name=Ggra4522.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000898_pilon:826000..827448+ (Gracilaria gracilis GNS1m male)
atggcgtccggcgacgcgccgacgccgacgccgccgccgtcgccgccgTC
CAGAAATCCGTTCTCCGCGGCGCGCGACTTTCTGTCGGGGCTGCGGCGCG
CGACGGGGCTGGTGGATGACCGCTCCGACGAGCTGTTCGACCTGGACCGC
GCGCAGCTGTTCGAGCAACAGGACGAGCCGCCGGAGGTGCTGGTGGTGGG
CGCCACCGGGCAGACGGGGCGCATCATTGTGAGGAAGCTGGTGCTGCGCG
GGTACAAGGTGCGTGTGTTGGTGCGAAACCTGTACAGCTCCACTCTGGAC
CTGCTGGGCACCGGCGTGTCGTTCGTCAAGGGTAGCCTCGATGACTACGA
CTCGCTGCTGGAGGCGACCGGCGACGTGGACAAGGTGATCTGCGCGGTGG
GCGCGCGCGAAGACGATGACGCGGAGCGCGTGGAGTATGAGGGCACTTGC
AAGTTGATTCGCGCGTTCCATGACGCGCGCGTGCAGTACTATGGGCGGTC
GGAGGCGACCAAACGCACGCTGTTCAACTTTGGACACGAGGAGCATCTGA
GCAAGTGGAAGCGCGTGGTGCCGGAACAGGGCGCGGACGGCGCCAGGCCG
CCGCGCGTGAACTTTCAGATCACGGGCGCTAACCGCGTGGCGTTCATGGG
GCACGTATATAGCACGTACTCTGGGCTGGCGGAGATCCGCACGGTGCCGG
CGCGCATGAATCTGCGCGGCTATTCCGGGTTCATTCTGCGCTGCATTGGG
GACGGCAAGACGTACCTGCTGGTGGTGCGCACGGCGCAGGGCGTGAAGGA
GGGCGTGGAGTACGTGGCGGCGGTGCAGTCGCACAAGAACAAGTGGGAGT
CGGTGCGGGTGGCGCTGTCGAGCTTCCGCGCGGTGGACATGAACGACGGC
TCTCGACGACGGGAGGCGGCGGCGTTGGACCGCGGGGACATCCGACAGAT
GGCGATCCAGTACCGCAAGCCGGCGGTGTCGCCCGAGAAGGACGACGGGC
GGTTCTACCTGGGGGTGGATTACCTCAAGATCTACCGCACGCAGGAGCAG
CCGGACTTTGTGCTGGTGTCGTGCGCGTCGGTGACGGCGCGCGACCTGTC
GGCGCTGGACGAGGGCGGGCTGCGCGCGGCGGCCAAGGACGACGTGACGG
CGTGGAAGTACCTGGCGGAGCAGCGGCTGCGCAACTCGGGGCTGACGTAC
TGCATCGTGAGGCCGGGCAGCTTCACGGAGCAGCCCGGCGGCAACAAGGC
CATCATGCTGGAGCAGGACGGCGACGTGAGCGGCGACATCAGCCGCGCGG
ACGTGGCCGAAATCTGCGTGAGCTCGTTGCTGGACCCGCGCGCGTGCAAT
CTCACCTTCGACGCCTTTGAGTCCATGTACGCGCCGTCCGCCATGCTGCC
CCGCGAGGACGTCAGCTCCATGCTGGGCCGCCTGCGCCCCAACACCTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:826000..827448+

>Ggra4522.t1 ID=Ggra4522.t1|Name=Ggra4522.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00000898_pilon:826000..827448+ (Gracilaria gracilis GNS1m male)
atggcgtccggcgacgcgccgacgccgacgccgccgccgtcgccgccgTC
CAGAAATCCGTTCTCCGCGGCGCGCGACTTTCTGTCGGGGCTGCGGCGCG
CGACGGGGCTGGTGGATGACCGCTCCGACGAGCTGTTCGACCTGGACCGC
GCGCAGCTGTTCGAGCAACAGGACGAGCCGCCGGAGGTGCTGGTGGTGGG
CGCCACCGGGCAGACGGGGCGCATCATTGTGAGGAAGCTGGTGCTGCGCG
GGTACAAGGTGCGTGTGTTGGTGCGAAACCTGTACAGCTCCACTCTGGAC
CTGCTGGGCACCGGCGTGTCGTTCGTCAAGGGTAGCCTCGATGACTACGA
CTCGCTGCTGGAGGCGACCGGCGACGTGGACAAGGTGATCTGCGCGGTGG
GCGCGCGCGAAGACGATGACGCGGAGCGCGTGGAGTATGAGGGCACTTGC
AAGTTGATTCGCGCGTTCCATGACGCGCGCGTGCAGTACTATGGGCGGTC
GGAGGCGACCAAACGCACGCTGTTCAACTTTGGACACGAGGAGCATCTGA
GCAAGTGGAAGCGCGTGGTGCCGGAACAGGGCGCGGACGGCGCCAGGCCG
CCGCGCGTGAACTTTCAGATCACGGGCGCTAACCGCGTGGCGTTCATGGG
GCACGTATATAGCACGTACTCTGGGCTGGCGGAGATCCGCACGGTGCCGG
CGCGCATGAATCTGCGCGGCTATTCCGGGTTCATTCTGCGCTGCATTGGG
GACGGCAAGACGTACCTGCTGGTGGTGCGCACGGCGCAGGGCGTGAAGGA
GGGCGTGGAGTACGTGGCGGCGGTGCAGTCGCACAAGAACAAGTGGGAGT
CGGTGCGGGTGGCGCTGTCGAGCTTCCGCGCGGTGGACATGAACGACGGC
TCTCGACGACGGGAGGCGGCGGCGTTGGACCGCGGGGACATCCGACAGAT
GGCGATCCAGTACCGCAAGCCGGCGGTGTCGCCCGAGAAGGACGACGGGC
GGTTCTACCTGGGGGTGGATTACCTCAAGATCTACCGCACGCAGGAGCAG
CCGGACTTTGTGCTGGTGTCGTGCGCGTCGGTGACGGCGCGCGACCTGTC
GGCGCTGGACGAGGGCGGGCTGCGCGCGGCGGCCAAGGACGACGTGACGG
CGTGGAAGTACCTGGCGGAGCAGCGGCTGCGCAACTCGGGGCTGACGTAC
TGCATCGTGAGGCCGGGCAGCTTCACGGAGCAGCCCGGCGGCAACAAGGC
CATCATGCTGGAGCAGGACGGCGACGTGAGCGGCGACATCAGCCGCGCGG
ACGTGGCCGAAATCTGCGTGAGCTCGTTGCTGGACCCGCGCGCGTGCAAT
CTCACCTTCGACGCCTTTGAGTCCATGTACGCGCCGTCCGCCATGCTGCC
CCGCGAGGACGTCAGCTCCATGCTGGGCCGCCTGCGCCCCAACACCTGA
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