Ggra4511.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4511.t1
Unique NameGgra4511.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:725795..726571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703945.1
Preferred namePIS1
PFAMsCDP-OH_P_transf
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00031,RC00078,RC02795
KEGG koko:K00999,ko:K15893
KEGG ReactionR01388,R01802
KEGG Pathwayko00260,ko00562,ko00564,ko00630,ko01100,ko01110,ko01130,ko01200,ko04070,map00260,map00562,map00564,map00630,map01100,map01110,map01130,map01200,map04070
KEGG ModuleM00532
GOsGO:0003674,GO:0003824,GO:0003881,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0090407,GO:1901576
Evalue8e-60
EggNOG OGsCOG0558@1|root,KOG3240@2759|Eukaryota
EC2.7.8.11
DescriptionCDP-diacylglycerol-inositol 3-phosphatidyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4511Ggra4511Gracilaria gracilis GNS1m malegenetig00000898_pilon 725795..726571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4511.t1Ggra4511.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 725795..726571 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4511.t1.start1Ggra4511.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 725795..725797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4511.t1.CDS1Ggra4511.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 725795..726418 +
Ggra4511.t1.CDS2Ggra4511.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 726539..726571 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4511.t1.exon1Ggra4511.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 725795..726418 +
Ggra4511.t1.exon2Ggra4511.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 726539..726571 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4511.t1.intron1Ggra4511.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 726419..726538 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4511.t1.stop1Ggra4511.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 726569..726571 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4511.t1 ID=Ggra4511.t1|Name=Ggra4511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MKSTKEWPVWLYVPNVIGYIRIVLSIIAFANYLKPRVFFAYYFLGFVLDA
ADGLAARKLDQQSEFGAQLDMLTDRCATAALLIVLSKLYPAHAYICYSLI
FLDGYSHWMQMVAAMCAGTASHKQASRGWLLKLYYWRPCLTFVCSLNEMC
FLMFYMQAFTKGPELFSWLSLYGAILWCAVPVCIVKQIISLWQIASAHAT
ITDAMVMKNMRVAMSPRG*
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spliced messenger RNA

>Ggra4511.t1 ID=Ggra4511.t1|Name=Ggra4511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000898_pilon:725795..726571+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCTACGAAGGAATGGCCCGTGTGGCTTTACGTCCCGAATGTCAT
CGGGTACATTCGCATCGTCCTGTCCATAATTGCCTTCGCCAACTACCTCA
AACCGCGCGTGTTCTTCGCATACTACTTTTTAGGATTTGTCCTGGATGCT
GCCGATGGACTTGCCGCTCGCAAACTAGATCAACAGTCCGAGTTTGGAGC
GCAATTGGACATGCTCACGGATCGATGTGCCACGGCAGCACTTCTCATAG
TGTTATCAAAACTCTACCCCGCGCATGCGTACATATGTTATTCTCTTATT
TTTCTTGACGGATACTCACATTGGATGCAGATGGTGGCTGCTATGTGCGC
TGGTACTGCTTCACACAAGCAAGCAAGTCGTGGGTGGCTACTCAAACTGT
ACTACTGGCGGCCGTGTTTGACGTTTGTTTGTTCGTTGAACGAGATGTGT
TTCCTTATGTTTTACATGCAAGCGTTTACAAAGGGACCCGAGTTGTTTTC
ATGGCTCTCATTATACGGTGCTATCCTGTGGTGTGCTGTTCCTGTGTGCA
TAGTGAAGCAGATTATTTCTTTGTGGCAGATTGCCTCAGCACATGCAACA
ATAACCGATGCAATGGTTATGAAAAATATGCGCGTGGCAATGAGCCCAAG
AGGTTGA
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protein sequence of Ggra4511.t1

>Ggra4511.t1 ID=Ggra4511.t1|Name=Ggra4511.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MKSTKEWPVWLYVPNVIGYIRIVLSIIAFANYLKPRVFFAYYFLGFVLDA
ADGLAARKLDQQSEFGAQLDMLTDRCATAALLIVLSKLYPAHAYICYSLI
FLDGYSHWMQMVAAMCAGTASHKQASRGWLLKLYYWRPCLTFVCSLNEMC
FLMFYMQAFTKGPELFSWLSLYGAILWCAVPVCIVKQIISLWQIASAHAT
ITDAMVMKNMRVAMSPRG*
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mRNA from alignment at tig00000898_pilon:725795..726571+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4511.t1 ID=Ggra4511.t1|Name=Ggra4511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000898_pilon:725795..726571+ (Gracilaria gracilis GNS1m male)
ATGAAGTCTACGAAGGAATGGCCCGTGTGGCTTTACGTCCCGAATGTCAT
CGGGTACATTCGCATCGTCCTGTCCATAATTGCCTTCGCCAACTACCTCA
AACCGCGCGTGTTCTTCGCATACTACTTTTTAGGATTTGTCCTGGATGCT
GCCGATGGACTTGCCGCTCGCAAACTAGATCAACAGTCCGAGTTTGGAGC
GCAATTGGACATGCTCACGGATCGATGTGCCACGGCAGCACTTCTCATAG
TGTTATCAAAACTCTACCCCGCGCATGCGTACATATGTTATTCTCTTATT
TTTCTTGACGGATACTCACATTGGATGCAGATGGTGGCTGCTATGTGCGC
TGGTACTGCTTCACACAAGCAAGCAAGTCGTGGGTGGCTACTCAAACTGT
ACTACTGGCGGCCGTGTTTGACGTTTGTTTGTTCGTTGAACGAGATGTGT
TTCCTTATGTTTTACATGCAAGCGTTTACAAAGGGACCCGAGTTGTTTTC
ATGGCTCTCATTATACGGTGCTATCCTGTGGTGTGCTGTTCCTGTGTGCA
TAGTGAAGCAGATTATTTCTTTGTGGCAGATTGCCTCAGCACATGCAACA
ATAACCGATGCAATGGTTATGAAAGTCTGTAATGAATCTTTTGAATGAAG
CTGTAGCGTCGTTTACTGTCCAacatactacatacatcatgacatactca
tacTAACTGAAGATCCATCTAGTACAATACTTTTTCCCATATAGAATATG
CGCGTGGCAATGAGCCCAAGAGGTTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:725795..726571+

>Ggra4511.t1 ID=Ggra4511.t1|Name=Ggra4511.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000898_pilon:725795..726571+ (Gracilaria gracilis GNS1m male)
ATGAAGTCTACGAAGGAATGGCCCGTGTGGCTTTACGTCCCGAATGTCAT
CGGGTACATTCGCATCGTCCTGTCCATAATTGCCTTCGCCAACTACCTCA
AACCGCGCGTGTTCTTCGCATACTACTTTTTAGGATTTGTCCTGGATGCT
GCCGATGGACTTGCCGCTCGCAAACTAGATCAACAGTCCGAGTTTGGAGC
GCAATTGGACATGCTCACGGATCGATGTGCCACGGCAGCACTTCTCATAG
TGTTATCAAAACTCTACCCCGCGCATGCGTACATATGTTATTCTCTTATT
TTTCTTGACGGATACTCACATTGGATGCAGATGGTGGCTGCTATGTGCGC
TGGTACTGCTTCACACAAGCAAGCAAGTCGTGGGTGGCTACTCAAACTGT
ACTACTGGCGGCCGTGTTTGACGTTTGTTTGTTCGTTGAACGAGATGTGT
TTCCTTATGTTTTACATGCAAGCGTTTACAAAGGGACCCGAGTTGTTTTC
ATGGCTCTCATTATACGGTGCTATCCTGTGGTGTGCTGTTCCTGTGTGCA
TAGTGAAGCAGATTATTTCTTTGTGGCAGATTGCCTCAGCACATGCAACA
ATAACCGATGCAATGGTTATGAAAAATATGCGCGTGGCAATGAGCCCAAG
AGGTTGA
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